One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m9/peak-motifs_dyads_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m9/peak-motifs_dyads_m9_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m9_shift0 ; 14 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m9_shift0 (dyads_m9dyads_m9)
; dyads_m9 (dyads_m9dyads_m9); m=0 (reference); ncol1=18; shift=0; ncol=20; vstGACAGCAGCTGaGsc-- ; Alignment reference a 22 15 16 7 66 1 76 1 0 64 1 0 0 1 49 6 15 13 0 0 c 21 27 10 3 2 71 2 0 78 0 0 76 1 3 15 10 26 32 0 0 g 24 31 11 64 9 6 0 76 0 0 77 2 0 73 9 58 27 18 0 0 t 11 5 41 4 1 0 0 1 0 14 0 0 77 1 5 4 10 15 0 0

MA1529.1_shift2 (NHLH2)
; dyads_m9 versus MA1529.1 (NHLH2); m=1/13; ncol2=18; w=16; offset=2; strand=D; shift=2; score=0.564472; --ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 0 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 0 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 0 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 0 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0500.2_rc_shift5 (MYOG_rc)
; dyads_m9 versus MA0500.2_rc (MYOG_rc); m=2/13; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.532949; -----sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0521.1_shift6 (Tcf12)
; dyads_m9 versus MA0521.1 (Tcf12); m=3/13; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.492707; ------rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1619.1_shift5 (Ptf1a(var.2))
; dyads_m9 versus MA1619.1 (Ptf1a(var.2)); m=4/13; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.482147; -----rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0048.2_rc_shift6 (NHLH1_rc)
; dyads_m9 versus MA0048.2_rc (NHLH1_rc); m=5/13; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.479663; ------mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1641.1_rc_shift5 (MYF5_rc)
; dyads_m9 versus MA1641.1_rc (MYF5_rc); m=6/13; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.469748; -----gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1646.1_shift2 (OSR2)
; dyads_m9 versus MA1646.1 (OSR2); m=7/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.467713; --amaCAGAAGChr------ ; cor=; Ncor= a 0 0 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 0 0 0 0 0 c 0 0 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 0 0 0 0 0 g 0 0 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 0 0 0 0 0 t 0 0 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0 0 0 0 0 0

MA0816.1_shift6 (Ascl2)
; dyads_m9 versus MA0816.1 (Ascl2); m=8/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.459324; ------arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1635.1_shift6 (BHLHE22(var.2))
; dyads_m9 versus MA1635.1 (BHLHE22(var.2)); m=9/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.454872; ------csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1100.2_shift6 (ASCL1)
; dyads_m9 versus MA1100.2 (ASCL1); m=10/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.445902; ------rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1472.1_shift6 (BHLHA15(var.2))
; dyads_m9 versus MA1472.1 (BHLHA15(var.2)); m=11/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.434458; ------avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0691.1_shift6 (TFAP4)
; dyads_m9 versus MA0691.1 (TFAP4); m=12/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.434096; ------AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; dyads_m9 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/13; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.423034; ---RACAGCTGTT------- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m9_shift0 (dyads_m9dyads_m9)				; dyads_m9 (dyads_m9dyads_m9); m=0 (reference); ncol1=18; shift=0; ncol=20; vstGACAGCAGCTGaGsc-- ; Alignment reference a 22 15 16 7 66 1 76 1 0 64 1 0 0 1 49 6 15 13 0 0 c 21 27 10 3 2 71 2 0 78 0 0 76 1 3 15 10 26 32 0 0 g 24 31 11 64 9 6 0 76 0 0 77 2 0 73 9 58 27 18 0 0 t 11 5 41 4 1 0 0 1 0 14 0 0 77 1 5 4 10 15 0 0
MA1529.1_shift2 (NHLH2)				; dyads_m9 versus MA1529.1 (NHLH2); m=1/13; ncol2=18; w=16; offset=2; strand=D; shift=2; score=0.564472; --ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 0 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 0 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 0 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 0 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0
MA0500.2_rc_shift5 (MYOG_rc)				; dyads_m9 versus MA0500.2_rc (MYOG_rc); m=2/13; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.532949; -----sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0
MA0521.1_shift6 (Tcf12)				; dyads_m9 versus MA0521.1 (Tcf12); m=3/13; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.492707; ------rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0
MA1619.1_shift5 (Ptf1a(var.2))				; dyads_m9 versus MA1619.1 (Ptf1a(var.2)); m=4/13; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.482147; -----rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0
MA0048.2_rc_shift6 (NHLH1_rc)				; dyads_m9 versus MA0048.2_rc (NHLH1_rc); m=5/13; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.479663; ------mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0
MA1641.1_rc_shift5 (MYF5_rc)				; dyads_m9 versus MA1641.1_rc (MYF5_rc); m=6/13; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.469748; -----gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0
MA1646.1_shift2 (OSR2)				; dyads_m9 versus MA1646.1 (OSR2); m=7/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.467713; --amaCAGAAGChr------ ; cor=; Ncor= a 0 0 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 0 0 0 0 0 c 0 0 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 0 0 0 0 0 g 0 0 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 0 0 0 0 0 t 0 0 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0 0 0 0 0 0
MA0816.1_shift6 (Ascl2)				; dyads_m9 versus MA0816.1 (Ascl2); m=8/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.459324; ------arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0
MA1635.1_shift6 (BHLHE22(var.2))				; dyads_m9 versus MA1635.1 (BHLHE22(var.2)); m=9/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.454872; ------csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0
MA1100.2_shift6 (ASCL1)				; dyads_m9 versus MA1100.2 (ASCL1); m=10/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.445902; ------rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0
MA1472.1_shift6 (BHLHA15(var.2))				; dyads_m9 versus MA1472.1 (BHLHA15(var.2)); m=11/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.434458; ------avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0
MA0691.1_shift6 (TFAP4)				; dyads_m9 versus MA0691.1 (TFAP4); m=12/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.434096; ------AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; dyads_m9 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/13; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.423034; ---RACAGCTGTT------- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0 0 0