One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m1/peak-motifs_local_words_6nt_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m1/peak-motifs_local_words_6nt_m1_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m1_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m1_shift0 (local_words_6nt_m1local_words_6nt_m1)
; local_words_6nt_m1 (local_words_6nt_m1local_words_6nt_m1); m=0 (reference); ncol1=22; shift=0; ncol=22; rsCtGCAGCAGCTGCTGCagsy ; Alignment reference a 51 21 12 30 10 10 139 8 1 171 2 0 8 0 1 26 4 8 96 30 17 39 c 40 47 130 23 13 138 8 1 179 0 2 178 0 1 167 12 26 153 31 40 93 52 g 49 94 20 24 153 25 11 171 1 1 177 1 1 178 3 10 138 10 22 90 49 41 t 41 19 19 104 5 8 23 1 0 9 0 2 172 2 10 133 13 10 32 21 22 49

MA1529.1_shift2 (NHLH2)
; local_words_6nt_m1 versus MA1529.1 (NHLH2); m=1/10; ncol2=18; w=18; offset=2; strand=D; shift=2; score=0.577433; --ggGyMGCAGCTGCGyCmc-- ; cor=; Ncor= a 0 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 0 0 c 0 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 0 0 g 0 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 0 0 t 0 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0 0 0

MA1485.1_rc_shift4 (FERD3L_rc)
; local_words_6nt_m1 versus MA1485.1_rc (FERD3L_rc); m=2/10; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.485619; ----GTrACAGCTGkyrC---- ; cor=; Ncor= a 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 c 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 g 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 t 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0

MA0500.2_rc_shift5 (MYOG_rc)
; local_words_6nt_m1 versus MA0500.2_rc (MYOG_rc); m=3/10; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.478611; -----sarCAGCTGyts----- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 c 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 g 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 t 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0

MA0832.1_rc_shift4 (Tcf21_rc)
; local_words_6nt_m1 versus MA0832.1_rc (Tcf21_rc); m=4/10; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.449522; ----ryAACAGCTGTTry---- ; cor=; Ncor= a 0 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 c 0 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 g 0 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 t 0 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0

MA0816.1_shift6 (Ascl2)
; local_words_6nt_m1 versus MA0816.1 (Ascl2); m=5/10; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.432828; ------arCAGCTGyy------ ; cor=; Ncor= a 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 c 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 g 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 t 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0

MA1631.1_rc_shift4 (ASCL1(var.2)_rc)
; local_words_6nt_m1 versus MA1631.1_rc (ASCL1(var.2)_rc); m=6/10; ncol2=13; w=13; offset=4; strand=R; shift=4; score=0.430775; ----gsrGCAGGTGchg----- ; cor=; Ncor= a 0 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 0 0 c 0 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 0 0 g 0 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 0 0 t 0 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0 0 0

MA0830.2_shift5 (TCF4)
; local_words_6nt_m1 versus MA0830.2 (TCF4); m=7/10; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.419447; -----cggCACCTGccss---- ; cor=; Ncor= a 0 0 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 0 c 0 0 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 0 g 0 0 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 0 t 0 0 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0 0

MA0521.1_shift6 (Tcf12)
; local_words_6nt_m1 versus MA0521.1 (Tcf12); m=8/10; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.419369; ------rRCAGCTGswg----- ; cor=; Ncor= a 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 c 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 g 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 t 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0

MA0048.2_rc_shift6 (NHLH1_rc)
; local_words_6nt_m1 versus MA0048.2_rc (NHLH1_rc); m=9/10; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.408309; ------mGCAGCTGCg------ ; cor=; Ncor= a 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 0 0 g 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 0 0 t 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0 0 0

MA1100.2_shift6 (ASCL1)
; local_words_6nt_m1 versus MA1100.2 (ASCL1); m=10/10; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.407688; ------rrCAGCTGcy------ ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 0 0 c 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 0 0 g 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 0 0 t 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m1_shift0 (local_words_6nt_m1local_words_6nt_m1)				; local_words_6nt_m1 (local_words_6nt_m1local_words_6nt_m1); m=0 (reference); ncol1=22; shift=0; ncol=22; rsCtGCAGCAGCTGCTGCagsy ; Alignment reference a 51 21 12 30 10 10 139 8 1 171 2 0 8 0 1 26 4 8 96 30 17 39 c 40 47 130 23 13 138 8 1 179 0 2 178 0 1 167 12 26 153 31 40 93 52 g 49 94 20 24 153 25 11 171 1 1 177 1 1 178 3 10 138 10 22 90 49 41 t 41 19 19 104 5 8 23 1 0 9 0 2 172 2 10 133 13 10 32 21 22 49
MA1529.1_shift2 (NHLH2)				; local_words_6nt_m1 versus MA1529.1 (NHLH2); m=1/10; ncol2=18; w=18; offset=2; strand=D; shift=2; score=0.577433; --ggGyMGCAGCTGCGyCmc-- ; cor=; Ncor= a 0 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 0 0 c 0 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 0 0 g 0 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 0 0 t 0 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0 0 0
MA1485.1_rc_shift4 (FERD3L_rc)				; local_words_6nt_m1 versus MA1485.1_rc (FERD3L_rc); m=2/10; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.485619; ----GTrACAGCTGkyrC---- ; cor=; Ncor= a 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 c 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 g 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 t 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0
MA0500.2_rc_shift5 (MYOG_rc)				; local_words_6nt_m1 versus MA0500.2_rc (MYOG_rc); m=3/10; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.478611; -----sarCAGCTGyts----- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 c 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 g 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 t 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0
MA0832.1_rc_shift4 (Tcf21_rc)				; local_words_6nt_m1 versus MA0832.1_rc (Tcf21_rc); m=4/10; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.449522; ----ryAACAGCTGTTry---- ; cor=; Ncor= a 0 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 c 0 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 g 0 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 t 0 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0
MA0816.1_shift6 (Ascl2)				; local_words_6nt_m1 versus MA0816.1 (Ascl2); m=5/10; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.432828; ------arCAGCTGyy------ ; cor=; Ncor= a 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 c 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 g 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 t 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0
MA1631.1_rc_shift4 (ASCL1(var.2)_rc)				; local_words_6nt_m1 versus MA1631.1_rc (ASCL1(var.2)_rc); m=6/10; ncol2=13; w=13; offset=4; strand=R; shift=4; score=0.430775; ----gsrGCAGGTGchg----- ; cor=; Ncor= a 0 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 0 0 c 0 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 0 0 g 0 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 0 0 t 0 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0 0 0
MA0830.2_shift5 (TCF4)				; local_words_6nt_m1 versus MA0830.2 (TCF4); m=7/10; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.419447; -----cggCACCTGccss---- ; cor=; Ncor= a 0 0 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 0 c 0 0 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 0 g 0 0 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 0 t 0 0 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0 0
MA0521.1_shift6 (Tcf12)				; local_words_6nt_m1 versus MA0521.1 (Tcf12); m=8/10; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.419369; ------rRCAGCTGswg----- ; cor=; Ncor= a 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 c 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 g 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 t 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0
MA0048.2_rc_shift6 (NHLH1_rc)				; local_words_6nt_m1 versus MA0048.2_rc (NHLH1_rc); m=9/10; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.408309; ------mGCAGCTGCg------ ; cor=; Ncor= a 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 0 0 g 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 0 0 t 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0 0 0
MA1100.2_shift6 (ASCL1)				; local_words_6nt_m1 versus MA1100.2 (ASCL1); m=10/10; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.407688; ------rrCAGCTGcy------ ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 0 0 c 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 0 0 g 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 0 0 t 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0 0 0