Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10.tf
		file1	1	12	303
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
local_words_6nt_m10 MA1631.1 local_words_6nt_m10local_words_6nt_m10 ASCL1(var.2) 0.974 0.899 12 13 12 13 0.9231 1.0000 0.9231 D 0
local_words_6nt_m10 MA0830.2 local_words_6nt_m10local_words_6nt_m10 TCF4 0.973 0.898 12 13 12 13 0.9231 1.0000 0.9231 D 0
local_words_6nt_m10 MA1648.1 local_words_6nt_m10local_words_6nt_m10 TCF12(var.2) 0.946 0.867 12 11 11 12 0.9167 0.9167 1.0000 D 1
local_words_6nt_m10 MA0522.3 local_words_6nt_m10local_words_6nt_m10 TCF3 0.942 0.863 12 11 11 12 0.9167 0.9167 1.0000 D 1
local_words_6nt_m10 MA0103.3 local_words_6nt_m10local_words_6nt_m10 ZEB1 0.900 0.825 12 11 11 12 0.9167 0.9167 1.0000 D 1
local_words_6nt_m10 MA0745.2 local_words_6nt_m10local_words_6nt_m10 SNAI2 0.851 0.785 12 13 12 13 0.9231 1.0000 0.9231 D 0
local_words_6nt_m10 MA1620.1 local_words_6nt_m10local_words_6nt_m10 Ptf1a(var.3) 0.783 0.783 12 12 12 12 1.0000 1.0000 1.0000 D 0
local_words_6nt_m10 MA1558.1 local_words_6nt_m10local_words_6nt_m10 SNAI1 0.934 0.779 12 10 10 12 0.8333 0.8333 1.0000 R 1
local_words_6nt_m10 MA0499.2 local_words_6nt_m10local_words_6nt_m10 MYOD1 0.835 0.771 12 13 12 13 0.9231 1.0000 0.9231 D 0
local_words_6nt_m10 MA1559.1 local_words_6nt_m10local_words_6nt_m10 SNAI3 0.898 0.749 12 10 10 12 0.8333 0.8333 1.0000 R 1
local_words_6nt_m10 MA0500.2 local_words_6nt_m10local_words_6nt_m10 MYOG 0.747 0.747 12 12 12 12 1.0000 1.0000 1.0000 D 0
local_words_6nt_m10 MA0822.1 local_words_6nt_m10local_words_6nt_m10 HES7 0.740 0.740 12 12 12 12 1.0000 1.0000 1.0000 D 0
local_words_6nt_m10 MA0821.1 local_words_6nt_m10local_words_6nt_m10 HES5 0.726 0.726 12 12 12 12 1.0000 1.0000 1.0000 D 0
local_words_6nt_m10 MA1100.2 local_words_6nt_m10local_words_6nt_m10 ASCL1 0.842 0.702 12 10 10 12 0.8333 0.8333 1.0000 R 1
local_words_6nt_m10 MA0521.1 local_words_6nt_m10local_words_6nt_m10 Tcf12 0.757 0.694 12 11 11 12 0.9167 0.9167 1.0000 R 0
local_words_6nt_m10 MA1621.1 local_words_6nt_m10local_words_6nt_m10 Rbpjl 0.803 0.688 12 14 12 14 0.8571 1.0000 0.8571 D -1
local_words_6nt_m10 MA0048.2 local_words_6nt_m10local_words_6nt_m10 NHLH1 0.811 0.676 12 10 10 12 0.8333 0.8333 1.0000 D 1
local_words_6nt_m10 MA0820.1 local_words_6nt_m10local_words_6nt_m10 FIGLA 0.782 0.652 12 10 10 12 0.8333 0.8333 1.0000 D 1
local_words_6nt_m10 MA0816.1 local_words_6nt_m10local_words_6nt_m10 Ascl2 0.782 0.651 12 10 10 12 0.8333 0.8333 1.0000 D 1
local_words_6nt_m10 MA1560.1 local_words_6nt_m10local_words_6nt_m10 SOHLH2 0.771 0.643 12 10 10 12 0.8333 0.8333 1.0000 D 1
local_words_6nt_m10 MA0616.2 local_words_6nt_m10local_words_6nt_m10 HES2 0.733 0.610 12 10 10 12 0.8333 0.8333 1.0000 R 1
local_words_6nt_m10 MA0825.1 local_words_6nt_m10local_words_6nt_m10 MNT 0.720 0.600 12 10 10 12 0.8333 0.8333 1.0000 R 1
local_words_6nt_m10 MA0823.1 local_words_6nt_m10local_words_6nt_m10 HEY1 0.720 0.600 12 10 10 12 0.8333 0.8333 1.0000 D 1
local_words_6nt_m10 MA1635.1 local_words_6nt_m10local_words_6nt_m10 BHLHE22(var.2) 0.719 0.599 12 10 10 12 0.8333 0.8333 1.0000 D 1
local_words_6nt_m10 MA0464.2 local_words_6nt_m10local_words_6nt_m10 BHLHE40 0.718 0.598 12 10 10 12 0.8333 0.8333 1.0000 D 1
local_words_6nt_m10 MA0649.1 local_words_6nt_m10local_words_6nt_m10 HEY2 0.702 0.585 12 10 10 12 0.8333 0.8333 1.0000 D 1
local_words_6nt_m10 MA0058.3 local_words_6nt_m10local_words_6nt_m10 MAX 0.702 0.585 12 10 10 12 0.8333 0.8333 1.0000 D 1
local_words_6nt_m10 MA0807.1 local_words_6nt_m10local_words_6nt_m10 TBX5 0.747 0.498 12 8 8 12 0.6667 0.6667 1.0000 R 0
local_words_6nt_m10 MA1628.1 local_words_6nt_m10local_words_6nt_m10 Zic1::Zic2 0.773 0.497 12 11 9 14 0.6429 0.7500 0.8182 R 3
local_words_6nt_m10 MA0806.1 local_words_6nt_m10local_words_6nt_m10 TBX4 0.734 0.490 12 8 8 12 0.6667 0.6667 1.0000 R 0
local_words_6nt_m10 MA1529.1 local_words_6nt_m10local_words_6nt_m10 NHLH2 0.728 0.486 12 18 12 18 0.6667 1.0000 0.6667 R -3
local_words_6nt_m10 MA1629.1 local_words_6nt_m10local_words_6nt_m10 Zic2 0.719 0.449 12 14 10 16 0.6250 0.8333 0.7143 R 2 
 Host name	pedagogix
 Job started	2020-04-13.225451
 Job done	2020-04-13.225526
 Seconds	4.89
	user	4.89
	system	0.64
	cuser	26.96
;	csystem	1.76