One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m10/peak-motifs_local_words_6nt_m10_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m10_shift3 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m10_shift3 (local_words_6nt_m10local_words_6nt_m10)
; local_words_6nt_m10 (local_words_6nt_m10local_words_6nt_m10); m=0 (reference); ncol1=12; shift=3; ncol=18; ---crGCACCTGCys--- ; Alignment reference a 0 0 0 50 80 15 2 286 2 2 1 0 2 10 56 0 0 0 c 0 0 0 139 72 10 300 3 298 293 9 1 280 119 87 0 0 0 g 0 0 0 68 76 271 0 14 2 8 9 302 3 44 111 0 0 0 t 0 0 0 46 75 7 1 0 1 0 284 0 18 130 49 0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; local_words_6nt_m10 versus MA1631.1 (ASCL1(var.2)); m=1/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.899425; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_shift3 (TCF4)
; local_words_6nt_m10 versus MA0830.2 (TCF4); m=2/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.898318; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_6nt_m10 versus MA1648.1 (TCF12(var.2)); m=3/32; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.867078; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; local_words_6nt_m10 versus MA0522.3 (TCF3); m=4/32; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.863305; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0103.3_shift4 (ZEB1)
; local_words_6nt_m10 versus MA0103.3 (ZEB1); m=5/32; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.825355; ----ssCACCTGsss--- ; cor=; Ncor= a 0 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 c 0 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 g 0 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 t 0 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0

MA0745.2_shift3 (SNAI2)
; local_words_6nt_m10 versus MA0745.2 (SNAI2); m=6/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.785283; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0

MA1620.1_shift3 (Ptf1a(var.3))
; local_words_6nt_m10 versus MA1620.1 (Ptf1a(var.3)); m=7/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.78345; ---rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0

MA1558.1_rc_shift4 (SNAI1_rc)
; local_words_6nt_m10 versus MA1558.1_rc (SNAI1_rc); m=8/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.778501; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_6nt_m10 versus MA0499.2 (MYOD1); m=9/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.770782; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1559.1_rc_shift4 (SNAI3_rc)
; local_words_6nt_m10 versus MA1559.1_rc (SNAI3_rc); m=10/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.74868; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0

MA0500.2_shift3 (MYOG)
; local_words_6nt_m10 versus MA0500.2 (MYOG); m=11/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.74675; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0822.1_shift3 (HES7)
; local_words_6nt_m10 versus MA0822.1 (HES7); m=12/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.740352; ---yGGCACGTGCCr--- ; cor=; Ncor= a 0 0 0 168.0 24.0 160.0 1.0 1864.0 0.0 4.0 3.0 2.0 8.0 0.0 946.0 0 0 0 c 0 0 0 790.0 19.0 29.0 1864.0 3.0 1864.0 1.0 3.0 1.0 1864.0 1864.0 47.0 0 0 0 g 0 0 0 43.0 1864.0 1864.0 0.0 7.0 0.0 1864.0 1.0 1864.0 5.0 9.0 734.0 0 0 0 t 0 0 0 863.0 3.0 2.0 3.0 0.0 0.0 1.0 1864.0 0.0 93.0 9.0 137.0 0 0 0

MA0821.1_shift3 (HES5)
; local_words_6nt_m10 versus MA0821.1 (HES5); m=13/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.725519; ---yGrCACGTGCCr--- ; cor=; Ncor= a 0 0 0 216.0 47.0 764.0 0.0 1559.0 1.0 1.0 0.0 0.0 0.0 0.0 651.0 0 0 0 c 0 0 0 779.0 6.0 63.0 1559.0 0.0 1559.0 0.0 7.0 0.0 1559.0 1559.0 153.0 0 0 0 g 0 0 0 30.0 1559.0 1559.0 0.0 1.0 0.0 1559.0 0.0 1559.0 14.0 1.0 475.0 0 0 0 t 0 0 0 535.0 1.0 0.0 0.0 0.0 1.0 0.0 1559.0 0.0 267.0 14.0 279.0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_6nt_m10 versus MA1100.2_rc (ASCL1_rc); m=14/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.70187; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_6nt_m10 versus MA0521.1_rc (Tcf12_rc); m=15/32; ncol2=11; w=11; offset=0; strand=R; shift=3; score=0.694143; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1621.1_shift2 (Rbpjl)
; local_words_6nt_m10 versus MA1621.1 (Rbpjl); m=16/32; ncol2=14; w=12; offset=-1; strand=D; shift=2; score=0.688191; --svmaCACCTGtsyc-- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_6nt_m10 versus MA0048.2 (NHLH1); m=17/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.675602; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_6nt_m10 versus MA0820.1 (FIGLA); m=18/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.651592; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_6nt_m10 versus MA0816.1 (Ascl2); m=19/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.651371; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1560.1_shift4 (SOHLH2)
; local_words_6nt_m10 versus MA1560.1 (SOHLH2); m=20/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.642853; ----ygCACGTGcr---- ; cor=; Ncor= a 0 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 381.0 0 0 0 0 c 0 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 239.0 0 0 0 0 g 0 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 369.0 0 0 0 0 t 0 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 224.0 0 0 0 0

MA0616.2_rc_shift4 (HES2_rc)
; local_words_6nt_m10 versus MA0616.2_rc (HES2_rc); m=21/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.610439; ----grCACGTGcC---- ; cor=; Ncor= a 0 0 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 0 0 0 c 0 0 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 0 0 0 g 0 0 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 0 0 0 t 0 0 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0 0 0 0

MA0825.1_rc_shift4 (MNT_rc)
; local_words_6nt_m10 versus MA0825.1_rc (MNT_rc); m=22/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.600114; ----rgCACGTGbt---- ; cor=; Ncor= a 0 0 0 0 219.0 120.0 25.0 681.0 0.0 16.0 21.0 5.0 63.0 129.0 0 0 0 0 c 0 0 0 0 75.0 131.0 681.0 15.0 681.0 7.0 0.0 0.0 203.0 145.0 0 0 0 0 g 0 0 0 0 229.0 281.0 0.0 0.0 0.0 681.0 0.0 681.0 228.0 128.0 0 0 0 0 t 0 0 0 0 159.0 150.0 0.0 0.0 15.0 0.0 681.0 27.0 187.0 279.0 0 0 0 0

MA0823.1_shift4 (HEY1)
; local_words_6nt_m10 versus MA0823.1 (HEY1); m=23/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.599661; ----grCACGTGyc---- ; cor=; Ncor= a 0 0 0 0 437.0 1373.0 1.0 3338.0 0.0 0.0 0.0 32.0 333.0 475.0 0 0 0 0 c 0 0 0 0 761.0 656.0 3338.0 30.0 3338.0 18.0 474.0 19.0 1762.0 2172.0 0 0 0 0 g 0 0 0 0 1788.0 1199.0 3.0 123.0 0.0 3338.0 10.0 3338.0 380.0 373.0 0 0 0 0 t 0 0 0 0 352.0 110.0 15.0 21.0 0.0 0.0 3338.0 22.0 863.0 318.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_6nt_m10 versus MA1635.1 (BHLHE22(var.2)); m=24/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.598826; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0464.2_shift4 (BHLHE40)
; local_words_6nt_m10 versus MA0464.2 (BHLHE40); m=25/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.598036; ----vkCACGTGmc---- ; cor=; Ncor= a 0 0 0 0 3824.0 1391.0 59.0 11222.0 23.0 66.0 167.0 4.0 5927.0 1544.0 0 0 0 0 c 0 0 0 0 3025.0 481.0 11222.0 130.0 11222.0 30.0 248.0 12.0 5295.0 5706.0 0 0 0 0 g 0 0 0 0 2926.0 5000.0 0.0 78.0 2.0 11222.0 87.0 11222.0 129.0 1385.0 0 0 0 0 t 0 0 0 0 1447.0 6222.0 14.0 77.0 32.0 0.0 11222.0 72.0 500.0 2587.0 0 0 0 0

MA0649.1_shift4 (HEY2)
; local_words_6nt_m10 versus MA0649.1 (HEY2); m=26/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.585196; ----GrCACGTGyc---- ; cor=; Ncor= a 0 0 0 0 107.0 651.0 84.0 1800.0 7.0 27.0 36.0 0.0 50.0 285.0 0 0 0 0 c 0 0 0 0 99.0 305.0 1800.0 0.0 1800.0 72.0 120.0 34.0 1047.0 869.0 0 0 0 0 g 0 0 0 0 1800.0 620.0 83.0 128.0 0.0 1800.0 0.0 1800.0 128.0 382.0 0 0 0 0 t 0 0 0 0 101.0 224.0 58.0 0.0 0.0 0.0 1800.0 30.0 753.0 264.0 0 0 0 0

MA0058.3_shift4 (MAX)
; local_words_6nt_m10 versus MA0058.3 (MAX); m=27/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.585059; ----amCACGTGcy---- ; cor=; Ncor= a 0 0 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 0 0 0 c 0 0 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 0 0 0 g 0 0 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 0 0 0 t 0 0 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0 0 0 0

MA0807.1_rc_shift3 (TBX5_rc)
; local_words_6nt_m10 versus MA0807.1_rc (TBX5_rc); m=28/32; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.498072; ---TmACACCT------- ; cor=; Ncor= a 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 c 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 g 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 t 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0

MA1628.1_rc_shift6 (Zic1::Zic2_rc)
; local_words_6nt_m10 versus MA1628.1_rc (Zic1::Zic2_rc); m=29/32; ncol2=11; w=9; offset=3; strand=R; shift=6; score=0.496725; ------ysCCTGCTGbg- ; cor=; Ncor= a 0 0 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 c 0 0 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 g 0 0 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 t 0 0 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0

MA0806.1_rc_shift3 (TBX4_rc)
; local_words_6nt_m10 versus MA0806.1_rc (TBX4_rc); m=30/32; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.489638; ---TcACACCT------- ; cor=; Ncor= a 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 0 c 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 0 g 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 0 t 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; local_words_6nt_m10 versus MA1529.1_rc (NHLH2_rc); m=31/32; ncol2=18; w=12; offset=-3; strand=R; shift=0; score=0.485552; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA1629.1_rc_shift5 (Zic2_rc)
; local_words_6nt_m10 versus MA1629.1_rc (Zic2_rc); m=32/32; ncol2=14; w=10; offset=2; strand=R; shift=5; score=0.449218; -----cyyCCTGCTGtGm ; cor=; Ncor= a 0 0 0 0 0 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 c 0 0 0 0 0 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 g 0 0 0 0 0 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 t 0 0 0 0 0 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m10_shift3 (local_words_6nt_m10local_words_6nt_m10)				; local_words_6nt_m10 (local_words_6nt_m10local_words_6nt_m10); m=0 (reference); ncol1=12; shift=3; ncol=18; ---crGCACCTGCys--- ; Alignment reference a 0 0 0 50 80 15 2 286 2 2 1 0 2 10 56 0 0 0 c 0 0 0 139 72 10 300 3 298 293 9 1 280 119 87 0 0 0 g 0 0 0 68 76 271 0 14 2 8 9 302 3 44 111 0 0 0 t 0 0 0 46 75 7 1 0 1 0 284 0 18 130 49 0 0 0
MA1631.1_shift3 (ASCL1(var.2))				; local_words_6nt_m10 versus MA1631.1 (ASCL1(var.2)); m=1/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.899425; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0
MA0830.2_shift3 (TCF4)				; local_words_6nt_m10 versus MA0830.2 (TCF4); m=2/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.898318; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0
MA1648.1_shift4 (TCF12(var.2))				; local_words_6nt_m10 versus MA1648.1 (TCF12(var.2)); m=3/32; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.867078; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0
MA0522.3_shift4 (TCF3)				; local_words_6nt_m10 versus MA0522.3 (TCF3); m=4/32; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.863305; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0
MA0103.3_shift4 (ZEB1)				; local_words_6nt_m10 versus MA0103.3 (ZEB1); m=5/32; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.825355; ----ssCACCTGsss--- ; cor=; Ncor= a 0 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 c 0 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 g 0 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 t 0 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0
MA0745.2_shift3 (SNAI2)				; local_words_6nt_m10 versus MA0745.2 (SNAI2); m=6/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.785283; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0
MA1620.1_shift3 (Ptf1a(var.3))				; local_words_6nt_m10 versus MA1620.1 (Ptf1a(var.3)); m=7/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.78345; ---rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0
MA1558.1_rc_shift4 (SNAI1_rc)				; local_words_6nt_m10 versus MA1558.1_rc (SNAI1_rc); m=8/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.778501; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0
MA0499.2_shift3 (MYOD1)				; local_words_6nt_m10 versus MA0499.2 (MYOD1); m=9/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.770782; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0
MA1559.1_rc_shift4 (SNAI3_rc)				; local_words_6nt_m10 versus MA1559.1_rc (SNAI3_rc); m=10/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.74868; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0
MA0500.2_shift3 (MYOG)				; local_words_6nt_m10 versus MA0500.2 (MYOG); m=11/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.74675; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0
MA0822.1_shift3 (HES7)				; local_words_6nt_m10 versus MA0822.1 (HES7); m=12/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.740352; ---yGGCACGTGCCr--- ; cor=; Ncor= a 0 0 0 168.0 24.0 160.0 1.0 1864.0 0.0 4.0 3.0 2.0 8.0 0.0 946.0 0 0 0 c 0 0 0 790.0 19.0 29.0 1864.0 3.0 1864.0 1.0 3.0 1.0 1864.0 1864.0 47.0 0 0 0 g 0 0 0 43.0 1864.0 1864.0 0.0 7.0 0.0 1864.0 1.0 1864.0 5.0 9.0 734.0 0 0 0 t 0 0 0 863.0 3.0 2.0 3.0 0.0 0.0 1.0 1864.0 0.0 93.0 9.0 137.0 0 0 0
MA0821.1_shift3 (HES5)				; local_words_6nt_m10 versus MA0821.1 (HES5); m=13/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.725519; ---yGrCACGTGCCr--- ; cor=; Ncor= a 0 0 0 216.0 47.0 764.0 0.0 1559.0 1.0 1.0 0.0 0.0 0.0 0.0 651.0 0 0 0 c 0 0 0 779.0 6.0 63.0 1559.0 0.0 1559.0 0.0 7.0 0.0 1559.0 1559.0 153.0 0 0 0 g 0 0 0 30.0 1559.0 1559.0 0.0 1.0 0.0 1559.0 0.0 1559.0 14.0 1.0 475.0 0 0 0 t 0 0 0 535.0 1.0 0.0 0.0 0.0 1.0 0.0 1559.0 0.0 267.0 14.0 279.0 0 0 0
MA1100.2_rc_shift4 (ASCL1_rc)				; local_words_6nt_m10 versus MA1100.2_rc (ASCL1_rc); m=14/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.70187; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0
MA0521.1_rc_shift3 (Tcf12_rc)				; local_words_6nt_m10 versus MA0521.1_rc (Tcf12_rc); m=15/32; ncol2=11; w=11; offset=0; strand=R; shift=3; score=0.694143; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0
MA1621.1_shift2 (Rbpjl)				; local_words_6nt_m10 versus MA1621.1 (Rbpjl); m=16/32; ncol2=14; w=12; offset=-1; strand=D; shift=2; score=0.688191; --svmaCACCTGtsyc-- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0
MA0048.2_shift4 (NHLH1)				; local_words_6nt_m10 versus MA0048.2 (NHLH1); m=17/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.675602; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0
MA0820.1_shift4 (FIGLA)				; local_words_6nt_m10 versus MA0820.1 (FIGLA); m=18/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.651592; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0
MA0816.1_shift4 (Ascl2)				; local_words_6nt_m10 versus MA0816.1 (Ascl2); m=19/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.651371; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0
MA1560.1_shift4 (SOHLH2)				; local_words_6nt_m10 versus MA1560.1 (SOHLH2); m=20/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.642853; ----ygCACGTGcr---- ; cor=; Ncor= a 0 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 381.0 0 0 0 0 c 0 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 239.0 0 0 0 0 g 0 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 369.0 0 0 0 0 t 0 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 224.0 0 0 0 0
MA0616.2_rc_shift4 (HES2_rc)				; local_words_6nt_m10 versus MA0616.2_rc (HES2_rc); m=21/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.610439; ----grCACGTGcC---- ; cor=; Ncor= a 0 0 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 0 0 0 c 0 0 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 0 0 0 g 0 0 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 0 0 0 t 0 0 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0 0 0 0
MA0825.1_rc_shift4 (MNT_rc)				; local_words_6nt_m10 versus MA0825.1_rc (MNT_rc); m=22/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.600114; ----rgCACGTGbt---- ; cor=; Ncor= a 0 0 0 0 219.0 120.0 25.0 681.0 0.0 16.0 21.0 5.0 63.0 129.0 0 0 0 0 c 0 0 0 0 75.0 131.0 681.0 15.0 681.0 7.0 0.0 0.0 203.0 145.0 0 0 0 0 g 0 0 0 0 229.0 281.0 0.0 0.0 0.0 681.0 0.0 681.0 228.0 128.0 0 0 0 0 t 0 0 0 0 159.0 150.0 0.0 0.0 15.0 0.0 681.0 27.0 187.0 279.0 0 0 0 0
MA0823.1_shift4 (HEY1)				; local_words_6nt_m10 versus MA0823.1 (HEY1); m=23/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.599661; ----grCACGTGyc---- ; cor=; Ncor= a 0 0 0 0 437.0 1373.0 1.0 3338.0 0.0 0.0 0.0 32.0 333.0 475.0 0 0 0 0 c 0 0 0 0 761.0 656.0 3338.0 30.0 3338.0 18.0 474.0 19.0 1762.0 2172.0 0 0 0 0 g 0 0 0 0 1788.0 1199.0 3.0 123.0 0.0 3338.0 10.0 3338.0 380.0 373.0 0 0 0 0 t 0 0 0 0 352.0 110.0 15.0 21.0 0.0 0.0 3338.0 22.0 863.0 318.0 0 0 0 0
MA1635.1_shift4 (BHLHE22(var.2))				; local_words_6nt_m10 versus MA1635.1 (BHLHE22(var.2)); m=24/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.598826; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0
MA0464.2_shift4 (BHLHE40)				; local_words_6nt_m10 versus MA0464.2 (BHLHE40); m=25/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.598036; ----vkCACGTGmc---- ; cor=; Ncor= a 0 0 0 0 3824.0 1391.0 59.0 11222.0 23.0 66.0 167.0 4.0 5927.0 1544.0 0 0 0 0 c 0 0 0 0 3025.0 481.0 11222.0 130.0 11222.0 30.0 248.0 12.0 5295.0 5706.0 0 0 0 0 g 0 0 0 0 2926.0 5000.0 0.0 78.0 2.0 11222.0 87.0 11222.0 129.0 1385.0 0 0 0 0 t 0 0 0 0 1447.0 6222.0 14.0 77.0 32.0 0.0 11222.0 72.0 500.0 2587.0 0 0 0 0
MA0649.1_shift4 (HEY2)				; local_words_6nt_m10 versus MA0649.1 (HEY2); m=26/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.585196; ----GrCACGTGyc---- ; cor=; Ncor= a 0 0 0 0 107.0 651.0 84.0 1800.0 7.0 27.0 36.0 0.0 50.0 285.0 0 0 0 0 c 0 0 0 0 99.0 305.0 1800.0 0.0 1800.0 72.0 120.0 34.0 1047.0 869.0 0 0 0 0 g 0 0 0 0 1800.0 620.0 83.0 128.0 0.0 1800.0 0.0 1800.0 128.0 382.0 0 0 0 0 t 0 0 0 0 101.0 224.0 58.0 0.0 0.0 0.0 1800.0 30.0 753.0 264.0 0 0 0 0
MA0058.3_shift4 (MAX)				; local_words_6nt_m10 versus MA0058.3 (MAX); m=27/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.585059; ----amCACGTGcy---- ; cor=; Ncor= a 0 0 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 0 0 0 c 0 0 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 0 0 0 g 0 0 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 0 0 0 t 0 0 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0 0 0 0
MA0807.1_rc_shift3 (TBX5_rc)				; local_words_6nt_m10 versus MA0807.1_rc (TBX5_rc); m=28/32; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.498072; ---TmACACCT------- ; cor=; Ncor= a 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 c 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 g 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 t 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0
MA1628.1_rc_shift6 (Zic1::Zic2_rc)				; local_words_6nt_m10 versus MA1628.1_rc (Zic1::Zic2_rc); m=29/32; ncol2=11; w=9; offset=3; strand=R; shift=6; score=0.496725; ------ysCCTGCTGbg- ; cor=; Ncor= a 0 0 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 c 0 0 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 g 0 0 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 t 0 0 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0
MA0806.1_rc_shift3 (TBX4_rc)				; local_words_6nt_m10 versus MA0806.1_rc (TBX4_rc); m=30/32; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.489638; ---TcACACCT------- ; cor=; Ncor= a 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 0 c 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 0 g 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 0 t 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0 0
MA1529.1_rc_shift0 (NHLH2_rc)				; local_words_6nt_m10 versus MA1529.1_rc (NHLH2_rc); m=31/32; ncol2=18; w=12; offset=-3; strand=R; shift=0; score=0.485552; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0
MA1629.1_rc_shift5 (Zic2_rc)				; local_words_6nt_m10 versus MA1629.1_rc (Zic2_rc); m=32/32; ncol2=14; w=10; offset=2; strand=R; shift=5; score=0.449218; -----cyyCCTGCTGtGm ; cor=; Ncor= a 0 0 0 0 0 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 c 0 0 0 0 0 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 g 0 0 0 0 0 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 t 0 0 0 0 0 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0