One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m13/peak-motifs_local_words_6nt_m13.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m13/peak-motifs_local_words_6nt_m13_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m13_shift4 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m13_shift4 (local_words_6nt_m13local_words_6nt_m13)
; local_words_6nt_m13 (local_words_6nt_m13local_words_6nt_m13); m=0 (reference); ncol1=12; shift=4; ncol=18; ----srGCAGGTGCwg-- ; Alignment reference a 0 0 0 0 49 130 18 0 286 0 1 0 1 7 77 46 0 0 c 0 0 0 0 112 45 3 304 9 8 2 15 0 272 76 68 0 0 g 0 0 0 0 88 120 282 1 9 295 300 3 302 11 72 140 0 0 t 0 0 0 0 56 10 2 0 1 2 2 287 2 15 80 51 0 0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; local_words_6nt_m13 versus MA1631.1_rc (ASCL1(var.2)_rc); m=1/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.899616; ---gsrGCAGGTGchg-- ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0

MA0830.2_rc_shift3 (TCF4_rc)
; local_words_6nt_m13 versus MA0830.2_rc (TCF4_rc); m=2/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.898464; ---ssggCAGGTGccg-- ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; local_words_6nt_m13 versus MA1648.1_rc (TCF12(var.2)_rc); m=3/32; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.867459; ----srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0522.3_rc_shift4 (TCF3_rc)
; local_words_6nt_m13 versus MA0522.3_rc (TCF3_rc); m=4/32; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.863662; ----ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0

MA0103.3_rc_shift4 (ZEB1_rc)
; local_words_6nt_m13 versus MA0103.3_rc (ZEB1_rc); m=5/32; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.825667; ----sssCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; local_words_6nt_m13 versus MA0745.2_rc (SNAI2_rc); m=6/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.78539; ---rykACAGGTGcrt-- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; local_words_6nt_m13 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=7/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.783419; ----rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA1558.1_shift5 (SNAI1)
; local_words_6nt_m13 versus MA1558.1 (SNAI1); m=8/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.778717; -----drCAGGTGyr--- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0

MA0499.2_rc_shift3 (MYOD1_rc)
; local_words_6nt_m13 versus MA0499.2_rc (MYOD1_rc); m=9/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.770704; ---rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA1559.1_shift5 (SNAI3)
; local_words_6nt_m13 versus MA1559.1 (SNAI3); m=10/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.748999; -----arCAGGTGya--- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0

MA0500.2_rc_shift4 (MYOG_rc)
; local_words_6nt_m13 versus MA0500.2_rc (MYOG_rc); m=11/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.746517; ----sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA0822.1_rc_shift4 (HES7_rc)
; local_words_6nt_m13 versus MA0822.1_rc (HES7_rc); m=12/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.739973; ----yGGCACGTGCCr-- ; cor=; Ncor= a 0 0 0 0 137.0 9.0 93.0 0.0 1864.0 1.0 0.0 0.0 3.0 2.0 3.0 863.0 0 0 c 0 0 0 0 734.0 9.0 5.0 1864.0 1.0 1864.0 0.0 7.0 0.0 1864.0 1864.0 43.0 0 0 g 0 0 0 0 47.0 1864.0 1864.0 1.0 3.0 1.0 1864.0 3.0 1864.0 29.0 19.0 790.0 0 0 t 0 0 0 0 946.0 0.0 8.0 2.0 3.0 4.0 0.0 1864.0 1.0 160.0 24.0 168.0 0 0

MA0821.1_rc_shift4 (HES5_rc)
; local_words_6nt_m13 versus MA0821.1_rc (HES5_rc); m=13/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.725214; ----yGGCACGTGyCr-- ; cor=; Ncor= a 0 0 0 0 279.0 14.0 267.0 0.0 1559.0 0.0 1.0 0.0 0.0 0.0 1.0 535.0 0 0 c 0 0 0 0 475.0 1.0 14.0 1559.0 0.0 1559.0 0.0 1.0 0.0 1559.0 1559.0 30.0 0 0 g 0 0 0 0 153.0 1559.0 1559.0 0.0 7.0 0.0 1559.0 0.0 1559.0 63.0 6.0 779.0 0 0 t 0 0 0 0 651.0 0.0 0.0 0.0 0.0 1.0 1.0 1559.0 0.0 764.0 47.0 216.0 0 0

MA1100.2_shift5 (ASCL1)
; local_words_6nt_m13 versus MA1100.2 (ASCL1); m=14/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.701734; -----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0521.1_shift5 (Tcf12)
; local_words_6nt_m13 versus MA0521.1 (Tcf12); m=15/32; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.694116; -----rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1621.1_rc_shift3 (Rbpjl_rc)
; local_words_6nt_m13 versus MA1621.1_rc (Rbpjl_rc); m=16/32; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.688176; ---grsaCAGGTGtkbs- ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; local_words_6nt_m13 versus MA0048.2_rc (NHLH1_rc); m=17/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.67536; -----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; local_words_6nt_m13 versus MA0820.1_rc (FIGLA_rc); m=18/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.651698; -----wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA0816.1_rc_shift5 (Ascl2_rc)
; local_words_6nt_m13 versus MA0816.1_rc (Ascl2_rc); m=19/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.650977; -----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1560.1_rc_shift5 (SOHLH2_rc)
; local_words_6nt_m13 versus MA1560.1_rc (SOHLH2_rc); m=20/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.642847; -----ygCACGTGcr--- ; cor=; Ncor= a 0 0 0 0 0 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 0 0 c 0 0 0 0 0 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 0 0 g 0 0 0 0 0 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 0 0 t 0 0 0 0 0 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0 0 0

MA0616.2_shift5 (HES2)
; local_words_6nt_m13 versus MA0616.2 (HES2); m=21/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.61043; -----GgCACGTGyc--- ; cor=; Ncor= a 0 0 0 0 0 775.0 1501.0 118.0 6455.0 0.0 0.0 0.0 53.0 512.0 966.0 0 0 0 c 0 0 0 0 0 1193.0 1107.0 8483.0 0.0 8483.0 0.0 1098.0 15.0 4634.0 4464.0 0 0 0 g 0 0 0 0 0 8483.0 8483.0 85.0 2028.0 0.0 8483.0 0.0 8483.0 1289.0 1735.0 0 0 0 t 0 0 0 0 0 798.0 1581.0 73.0 0.0 129.0 0.0 8483.0 0.0 3849.0 1319.0 0 0 0

MA0825.1_shift5 (MNT)
; local_words_6nt_m13 versus MA0825.1 (MNT); m=22/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.599937; -----avCACGTGcy--- ; cor=; Ncor= a 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 0 0 c 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 0 0 g 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 0 0 t 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0 0 0

MA0823.1_rc_shift5 (HEY1_rc)
; local_words_6nt_m13 versus MA0823.1_rc (HEY1_rc); m=23/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.599606; -----grCACGTGyc--- ; cor=; Ncor= a 0 0 0 0 0 318.0 863.0 22.0 3338.0 0.0 0.0 21.0 15.0 110.0 352.0 0 0 0 c 0 0 0 0 0 373.0 380.0 3338.0 10.0 3338.0 0.0 123.0 3.0 1199.0 1788.0 0 0 0 g 0 0 0 0 0 2172.0 1762.0 19.0 474.0 18.0 3338.0 30.0 3338.0 656.0 761.0 0 0 0 t 0 0 0 0 0 475.0 333.0 32.0 0.0 0.0 0.0 3338.0 1.0 1373.0 437.0 0 0 0

MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)
; local_words_6nt_m13 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=24/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.598919; -----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0464.2_rc_shift5 (BHLHE40_rc)
; local_words_6nt_m13 versus MA0464.2_rc (BHLHE40_rc); m=25/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.597838; -----gkCACGTGmb--- ; cor=; Ncor= a 0 0 0 0 0 2587.0 500.0 72.0 11222.0 0.0 32.0 77.0 14.0 6222.0 1447.0 0 0 0 c 0 0 0 0 0 1385.0 129.0 11222.0 87.0 11222.0 2.0 78.0 0.0 5000.0 2926.0 0 0 0 g 0 0 0 0 0 5706.0 5295.0 12.0 248.0 30.0 11222.0 130.0 11222.0 481.0 3025.0 0 0 0 t 0 0 0 0 0 1544.0 5927.0 4.0 167.0 66.0 23.0 11222.0 59.0 1391.0 3824.0 0 0 0

MA0649.1_rc_shift5 (HEY2_rc)
; local_words_6nt_m13 versus MA0649.1_rc (HEY2_rc); m=26/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.585074; -----grCACGTGyC--- ; cor=; Ncor= a 0 0 0 0 0 264.0 753.0 30.0 1800.0 0.0 0.0 0.0 58.0 224.0 101.0 0 0 0 c 0 0 0 0 0 382.0 128.0 1800.0 0.0 1800.0 0.0 128.0 83.0 620.0 1800.0 0 0 0 g 0 0 0 0 0 869.0 1047.0 34.0 120.0 72.0 1800.0 0.0 1800.0 305.0 99.0 0 0 0 t 0 0 0 0 0 285.0 50.0 0.0 36.0 27.0 7.0 1800.0 84.0 651.0 107.0 0 0 0

MA0058.3_rc_shift5 (MAX_rc)
; local_words_6nt_m13 versus MA0058.3_rc (MAX_rc); m=27/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.584958; -----rgCACGTGkt--- ; cor=; Ncor= a 0 0 0 0 0 2543.0 1446.0 36.0 6876.0 19.0 229.0 38.0 0.0 637.0 719.0 0 0 0 c 0 0 0 0 0 986.0 1638.0 6876.0 20.0 6876.0 7.0 87.0 0.0 1514.0 1295.0 0 0 0 g 0 0 0 0 0 2225.0 2450.0 27.0 159.0 39.0 6876.0 0.0 6876.0 2809.0 1556.0 0 0 0 t 0 0 0 0 0 1122.0 1341.0 0.0 69.0 329.0 0.0 6876.0 39.0 1915.0 3307.0 0 0 0

MA0807.1_shift8 (TBX5)
; local_words_6nt_m13 versus MA0807.1 (TBX5); m=28/32; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.497884; --------AGGTGTkA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 0 0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 0 0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 0 0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0 0 0

MA1628.1_shift2 (Zic1::Zic2)
; local_words_6nt_m13 versus MA1628.1 (Zic1::Zic2); m=29/32; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.496836; --cvCAGCAGGsr----- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0 0 0

MA0806.1_shift8 (TBX4)
; local_words_6nt_m13 versus MA0806.1 (TBX4); m=30/32; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.489379; --------AGGTGTgA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 0 0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 0 0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 0 0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0 0 0

MA1529.1_shift1 (NHLH2)
; local_words_6nt_m13 versus MA1529.1 (NHLH2); m=31/32; ncol2=18; w=12; offset=-3; strand=D; shift=1; score=0.485427; -ggGyMGCAGCTGCGyCm ; cor=; Ncor= a 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 c 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 g 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 t 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0

MA1629.1_shift0 (Zic2)
; local_words_6nt_m13 versus MA1629.1 (Zic2); m=32/32; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.449541; mkCaCAGCAGGrrg---- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m13_shift4 (local_words_6nt_m13local_words_6nt_m13)				; local_words_6nt_m13 (local_words_6nt_m13local_words_6nt_m13); m=0 (reference); ncol1=12; shift=4; ncol=18; ----srGCAGGTGCwg-- ; Alignment reference a 0 0 0 0 49 130 18 0 286 0 1 0 1 7 77 46 0 0 c 0 0 0 0 112 45 3 304 9 8 2 15 0 272 76 68 0 0 g 0 0 0 0 88 120 282 1 9 295 300 3 302 11 72 140 0 0 t 0 0 0 0 56 10 2 0 1 2 2 287 2 15 80 51 0 0
MA1631.1_rc_shift3 (ASCL1(var.2)_rc)				; local_words_6nt_m13 versus MA1631.1_rc (ASCL1(var.2)_rc); m=1/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.899616; ---gsrGCAGGTGchg-- ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0
MA0830.2_rc_shift3 (TCF4_rc)				; local_words_6nt_m13 versus MA0830.2_rc (TCF4_rc); m=2/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.898464; ---ssggCAGGTGccg-- ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0
MA1648.1_rc_shift4 (TCF12(var.2)_rc)				; local_words_6nt_m13 versus MA1648.1_rc (TCF12(var.2)_rc); m=3/32; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.867459; ----srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0
MA0522.3_rc_shift4 (TCF3_rc)				; local_words_6nt_m13 versus MA0522.3_rc (TCF3_rc); m=4/32; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.863662; ----ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0
MA0103.3_rc_shift4 (ZEB1_rc)				; local_words_6nt_m13 versus MA0103.3_rc (ZEB1_rc); m=5/32; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.825667; ----sssCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0 0
MA0745.2_rc_shift3 (SNAI2_rc)				; local_words_6nt_m13 versus MA0745.2_rc (SNAI2_rc); m=6/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.78539; ---rykACAGGTGcrt-- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)				; local_words_6nt_m13 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=7/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.783419; ----rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0
MA1558.1_shift5 (SNAI1)				; local_words_6nt_m13 versus MA1558.1 (SNAI1); m=8/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.778717; -----drCAGGTGyr--- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0
MA0499.2_rc_shift3 (MYOD1_rc)				; local_words_6nt_m13 versus MA0499.2_rc (MYOD1_rc); m=9/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.770704; ---rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0
MA1559.1_shift5 (SNAI3)				; local_words_6nt_m13 versus MA1559.1 (SNAI3); m=10/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.748999; -----arCAGGTGya--- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0
MA0500.2_rc_shift4 (MYOG_rc)				; local_words_6nt_m13 versus MA0500.2_rc (MYOG_rc); m=11/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.746517; ----sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA0822.1_rc_shift4 (HES7_rc)				; local_words_6nt_m13 versus MA0822.1_rc (HES7_rc); m=12/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.739973; ----yGGCACGTGCCr-- ; cor=; Ncor= a 0 0 0 0 137.0 9.0 93.0 0.0 1864.0 1.0 0.0 0.0 3.0 2.0 3.0 863.0 0 0 c 0 0 0 0 734.0 9.0 5.0 1864.0 1.0 1864.0 0.0 7.0 0.0 1864.0 1864.0 43.0 0 0 g 0 0 0 0 47.0 1864.0 1864.0 1.0 3.0 1.0 1864.0 3.0 1864.0 29.0 19.0 790.0 0 0 t 0 0 0 0 946.0 0.0 8.0 2.0 3.0 4.0 0.0 1864.0 1.0 160.0 24.0 168.0 0 0
MA0821.1_rc_shift4 (HES5_rc)				; local_words_6nt_m13 versus MA0821.1_rc (HES5_rc); m=13/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.725214; ----yGGCACGTGyCr-- ; cor=; Ncor= a 0 0 0 0 279.0 14.0 267.0 0.0 1559.0 0.0 1.0 0.0 0.0 0.0 1.0 535.0 0 0 c 0 0 0 0 475.0 1.0 14.0 1559.0 0.0 1559.0 0.0 1.0 0.0 1559.0 1559.0 30.0 0 0 g 0 0 0 0 153.0 1559.0 1559.0 0.0 7.0 0.0 1559.0 0.0 1559.0 63.0 6.0 779.0 0 0 t 0 0 0 0 651.0 0.0 0.0 0.0 0.0 1.0 1.0 1559.0 0.0 764.0 47.0 216.0 0 0
MA1100.2_shift5 (ASCL1)				; local_words_6nt_m13 versus MA1100.2 (ASCL1); m=14/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.701734; -----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA0521.1_shift5 (Tcf12)				; local_words_6nt_m13 versus MA0521.1 (Tcf12); m=15/32; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.694116; -----rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0
MA1621.1_rc_shift3 (Rbpjl_rc)				; local_words_6nt_m13 versus MA1621.1_rc (Rbpjl_rc); m=16/32; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.688176; ---grsaCAGGTGtkbs- ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0
MA0048.2_rc_shift5 (NHLH1_rc)				; local_words_6nt_m13 versus MA0048.2_rc (NHLH1_rc); m=17/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.67536; -----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0
MA0820.1_rc_shift5 (FIGLA_rc)				; local_words_6nt_m13 versus MA0820.1_rc (FIGLA_rc); m=18/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.651698; -----wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0
MA0816.1_rc_shift5 (Ascl2_rc)				; local_words_6nt_m13 versus MA0816.1_rc (Ascl2_rc); m=19/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.650977; -----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0
MA1560.1_rc_shift5 (SOHLH2_rc)				; local_words_6nt_m13 versus MA1560.1_rc (SOHLH2_rc); m=20/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.642847; -----ygCACGTGcr--- ; cor=; Ncor= a 0 0 0 0 0 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 0 0 c 0 0 0 0 0 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 0 0 g 0 0 0 0 0 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 0 0 t 0 0 0 0 0 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0 0 0
MA0616.2_shift5 (HES2)				; local_words_6nt_m13 versus MA0616.2 (HES2); m=21/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.61043; -----GgCACGTGyc--- ; cor=; Ncor= a 0 0 0 0 0 775.0 1501.0 118.0 6455.0 0.0 0.0 0.0 53.0 512.0 966.0 0 0 0 c 0 0 0 0 0 1193.0 1107.0 8483.0 0.0 8483.0 0.0 1098.0 15.0 4634.0 4464.0 0 0 0 g 0 0 0 0 0 8483.0 8483.0 85.0 2028.0 0.0 8483.0 0.0 8483.0 1289.0 1735.0 0 0 0 t 0 0 0 0 0 798.0 1581.0 73.0 0.0 129.0 0.0 8483.0 0.0 3849.0 1319.0 0 0 0
MA0825.1_shift5 (MNT)				; local_words_6nt_m13 versus MA0825.1 (MNT); m=22/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.599937; -----avCACGTGcy--- ; cor=; Ncor= a 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 0 0 c 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 0 0 g 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 0 0 t 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0 0 0
MA0823.1_rc_shift5 (HEY1_rc)				; local_words_6nt_m13 versus MA0823.1_rc (HEY1_rc); m=23/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.599606; -----grCACGTGyc--- ; cor=; Ncor= a 0 0 0 0 0 318.0 863.0 22.0 3338.0 0.0 0.0 21.0 15.0 110.0 352.0 0 0 0 c 0 0 0 0 0 373.0 380.0 3338.0 10.0 3338.0 0.0 123.0 3.0 1199.0 1788.0 0 0 0 g 0 0 0 0 0 2172.0 1762.0 19.0 474.0 18.0 3338.0 30.0 3338.0 656.0 761.0 0 0 0 t 0 0 0 0 0 475.0 333.0 32.0 0.0 0.0 0.0 3338.0 1.0 1373.0 437.0 0 0 0
MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)				; local_words_6nt_m13 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=24/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.598919; -----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0
MA0464.2_rc_shift5 (BHLHE40_rc)				; local_words_6nt_m13 versus MA0464.2_rc (BHLHE40_rc); m=25/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.597838; -----gkCACGTGmb--- ; cor=; Ncor= a 0 0 0 0 0 2587.0 500.0 72.0 11222.0 0.0 32.0 77.0 14.0 6222.0 1447.0 0 0 0 c 0 0 0 0 0 1385.0 129.0 11222.0 87.0 11222.0 2.0 78.0 0.0 5000.0 2926.0 0 0 0 g 0 0 0 0 0 5706.0 5295.0 12.0 248.0 30.0 11222.0 130.0 11222.0 481.0 3025.0 0 0 0 t 0 0 0 0 0 1544.0 5927.0 4.0 167.0 66.0 23.0 11222.0 59.0 1391.0 3824.0 0 0 0
MA0649.1_rc_shift5 (HEY2_rc)				; local_words_6nt_m13 versus MA0649.1_rc (HEY2_rc); m=26/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.585074; -----grCACGTGyC--- ; cor=; Ncor= a 0 0 0 0 0 264.0 753.0 30.0 1800.0 0.0 0.0 0.0 58.0 224.0 101.0 0 0 0 c 0 0 0 0 0 382.0 128.0 1800.0 0.0 1800.0 0.0 128.0 83.0 620.0 1800.0 0 0 0 g 0 0 0 0 0 869.0 1047.0 34.0 120.0 72.0 1800.0 0.0 1800.0 305.0 99.0 0 0 0 t 0 0 0 0 0 285.0 50.0 0.0 36.0 27.0 7.0 1800.0 84.0 651.0 107.0 0 0 0
MA0058.3_rc_shift5 (MAX_rc)				; local_words_6nt_m13 versus MA0058.3_rc (MAX_rc); m=27/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.584958; -----rgCACGTGkt--- ; cor=; Ncor= a 0 0 0 0 0 2543.0 1446.0 36.0 6876.0 19.0 229.0 38.0 0.0 637.0 719.0 0 0 0 c 0 0 0 0 0 986.0 1638.0 6876.0 20.0 6876.0 7.0 87.0 0.0 1514.0 1295.0 0 0 0 g 0 0 0 0 0 2225.0 2450.0 27.0 159.0 39.0 6876.0 0.0 6876.0 2809.0 1556.0 0 0 0 t 0 0 0 0 0 1122.0 1341.0 0.0 69.0 329.0 0.0 6876.0 39.0 1915.0 3307.0 0 0 0
MA0807.1_shift8 (TBX5)				; local_words_6nt_m13 versus MA0807.1 (TBX5); m=28/32; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.497884; --------AGGTGTkA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 0 0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 0 0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 0 0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0 0 0
MA1628.1_shift2 (Zic1::Zic2)				; local_words_6nt_m13 versus MA1628.1 (Zic1::Zic2); m=29/32; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.496836; --cvCAGCAGGsr----- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0 0 0
MA0806.1_shift8 (TBX4)				; local_words_6nt_m13 versus MA0806.1 (TBX4); m=30/32; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.489379; --------AGGTGTgA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 0 0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 0 0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 0 0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0 0 0
MA1529.1_shift1 (NHLH2)				; local_words_6nt_m13 versus MA1529.1 (NHLH2); m=31/32; ncol2=18; w=12; offset=-3; strand=D; shift=1; score=0.485427; -ggGyMGCAGCTGCGyCm ; cor=; Ncor= a 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 c 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 g 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 t 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0
MA1629.1_shift0 (Zic2)				; local_words_6nt_m13 versus MA1629.1 (Zic2); m=32/32; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.449541; mkCaCAGCAGGrrg---- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0 0 0