One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m7/peak-motifs_local_words_6nt_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m7/peak-motifs_local_words_6nt_m7_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m7_shift1 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m7_shift1 (local_words_6nt_m7local_words_6nt_m7)
; local_words_6nt_m7 (local_words_6nt_m7local_words_6nt_m7); m=0 (reference); ncol1=23; shift=1; ncol=24; -sgccGCAGCTGCtGCaGCaGCyg ; Alignment reference a 0 19 20 4 23 3 0 92 1 2 15 1 1 19 3 2 70 4 2 55 6 4 22 11 c 0 31 24 68 48 3 104 7 1 102 7 2 100 11 6 95 17 5 97 19 3 93 27 22 g 0 33 53 23 18 96 1 2 103 0 6 100 1 9 93 2 7 92 5 12 93 6 23 65 t 0 22 8 10 16 3 0 4 0 1 77 2 3 66 3 6 11 4 1 19 3 2 33 7

MA1529.1_rc_shift0 (NHLH2_rc)
; local_words_6nt_m7 versus MA1529.1_rc (NHLH2_rc); m=1/7; ncol2=18; w=17; offset=-1; strand=R; shift=0; score=0.527402; gkGrCGCAGCTGCKrCcc------ ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 0 0 0 0 0 0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 0 0 0 0 0 0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 0 0 0 0 0 0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0 0 0 0 0 0 0

MA0500.2_shift3 (MYOG)
; local_words_6nt_m7 versus MA0500.2 (MYOG); m=2/7; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.446589; ---sarCAGCTGyts--------- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_6nt_m7 versus MA1485.1_rc (FERD3L_rc); m=3/7; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.437656; --GTrACAGCTGkyrC-------- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; local_words_6nt_m7 versus MA1631.1_rc (ASCL1(var.2)_rc); m=4/7; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.412904; --gsrGCAGGTGchg--------- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 0 0 0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 0 0 0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 0 0 0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0 0 0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_6nt_m7 versus MA0048.2 (NHLH1); m=5/7; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.409196; ----cGCAGCTGCk---------- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0 0 0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; local_words_6nt_m7 versus MA0830.2_rc (TCF4_rc); m=6/7; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.407814; --ssggCAGGTGccg--------- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 0 0 0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 0 0 0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 0 0 0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0 0 0 0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_6nt_m7 versus MA0521.1_rc (Tcf12_rc); m=7/7; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.400086; ---cwsCAGCTGYy---------- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m7_shift1 (local_words_6nt_m7local_words_6nt_m7)				; local_words_6nt_m7 (local_words_6nt_m7local_words_6nt_m7); m=0 (reference); ncol1=23; shift=1; ncol=24; -sgccGCAGCTGCtGCaGCaGCyg ; Alignment reference a 0 19 20 4 23 3 0 92 1 2 15 1 1 19 3 2 70 4 2 55 6 4 22 11 c 0 31 24 68 48 3 104 7 1 102 7 2 100 11 6 95 17 5 97 19 3 93 27 22 g 0 33 53 23 18 96 1 2 103 0 6 100 1 9 93 2 7 92 5 12 93 6 23 65 t 0 22 8 10 16 3 0 4 0 1 77 2 3 66 3 6 11 4 1 19 3 2 33 7
MA1529.1_rc_shift0 (NHLH2_rc)				; local_words_6nt_m7 versus MA1529.1_rc (NHLH2_rc); m=1/7; ncol2=18; w=17; offset=-1; strand=R; shift=0; score=0.527402; gkGrCGCAGCTGCKrCcc------ ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 0 0 0 0 0 0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 0 0 0 0 0 0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 0 0 0 0 0 0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0 0 0 0 0 0 0
MA0500.2_shift3 (MYOG)				; local_words_6nt_m7 versus MA0500.2 (MYOG); m=2/7; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.446589; ---sarCAGCTGyts--------- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0 0 0
MA1485.1_rc_shift2 (FERD3L_rc)				; local_words_6nt_m7 versus MA1485.1_rc (FERD3L_rc); m=3/7; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.437656; --GTrACAGCTGkyrC-------- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0 0 0
MA1631.1_rc_shift2 (ASCL1(var.2)_rc)				; local_words_6nt_m7 versus MA1631.1_rc (ASCL1(var.2)_rc); m=4/7; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.412904; --gsrGCAGGTGchg--------- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 0 0 0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 0 0 0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 0 0 0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0 0 0 0 0 0 0
MA0048.2_shift4 (NHLH1)				; local_words_6nt_m7 versus MA0048.2 (NHLH1); m=5/7; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.409196; ----cGCAGCTGCk---------- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0 0 0 0 0
MA0830.2_rc_shift2 (TCF4_rc)				; local_words_6nt_m7 versus MA0830.2_rc (TCF4_rc); m=6/7; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.407814; --ssggCAGGTGccg--------- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 0 0 0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 0 0 0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 0 0 0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0 0 0 0 0 0 0
MA0521.1_rc_shift3 (Tcf12_rc)				; local_words_6nt_m7 versus MA0521.1_rc (Tcf12_rc); m=7/7; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.400086; ---cwsCAGCTGYy---------- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0 0 0