One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m8/peak-motifs_local_words_6nt_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_6nt_m8/peak-motifs_local_words_6nt_m8_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m8_shift0 ; 14 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m8_shift0 (local_words_6nt_m8local_words_6nt_m8)
; local_words_6nt_m8 (local_words_6nt_m8local_words_6nt_m8); m=0 (reference); ncol1=21; shift=0; ncol=21; tscCACAGCTGCyrCAGCTgc ; Alignment reference a 13 7 7 3 70 1 80 0 0 8 0 1 4 23 1 64 0 2 1 13 13 c 12 25 50 62 3 81 2 2 84 2 0 78 25 5 76 3 4 78 7 19 48 g 14 43 11 15 8 2 1 81 0 1 84 0 1 53 1 8 77 1 4 45 9 t 45 9 16 4 3 0 1 1 0 73 0 5 54 3 6 9 3 3 72 7 14

MA1485.1_rc_shift1 (FERD3L_rc)
; local_words_6nt_m8 versus MA1485.1_rc (FERD3L_rc); m=1/13; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.545349; -GTrACAGCTGkyrC------ ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0

MA0832.1_shift1 (Tcf21)
; local_words_6nt_m8 versus MA0832.1 (Tcf21); m=2/13; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.493316; -ryAACAGCTGTTry------ ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 0 0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 0 0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 0 0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0 0 0 0 0

MA0500.2_shift2 (MYOG)
; local_words_6nt_m8 versus MA0500.2 (MYOG); m=3/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.48726; --sarCAGCTGyts------- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; local_words_6nt_m8 versus MA0499.2_rc (MYOD1_rc); m=4/13; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.478241; -rkrACAGGTGcwg------- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; local_words_6nt_m8 versus MA1619.1 (Ptf1a(var.2)); m=5/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.474223; --rmaCAGCTGtky------- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0

MA1641.1_shift2 (MYF5)
; local_words_6nt_m8 versus MA1641.1 (MYF5); m=6/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.470617; --gvaCAGCTGtbc------- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0

MA0521.1_shift3 (Tcf12)
; local_words_6nt_m8 versus MA0521.1 (Tcf12); m=7/13; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.452695; ---rRCAGCTGswg------- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0 0 0

MA1631.1_shift2 (ASCL1(var.2))
; local_words_6nt_m8 versus MA1631.1 (ASCL1(var.2)); m=8/13; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.434757; --cdgCACCTGCysc------ ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; local_words_6nt_m8 versus MA0048.2 (NHLH1); m=9/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.415885; ---cGCAGCTGCk-------- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0 0 0

MA0816.1_shift3 (Ascl2)
; local_words_6nt_m8 versus MA0816.1 (Ascl2); m=10/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.414733; ---arCAGCTGyy-------- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; local_words_6nt_m8 versus MA1635.1 (BHLHE22(var.2)); m=11/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.408892; ---csCAGCTGsg-------- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; local_words_6nt_m8 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/13; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.407501; ---rrCAGCTGbt-------- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; local_words_6nt_m8 versus MA1100.2_rc (ASCL1_rc); m=13/13; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.404976; ---rgCAGCTGyy-------- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m8_shift0 (local_words_6nt_m8local_words_6nt_m8)				; local_words_6nt_m8 (local_words_6nt_m8local_words_6nt_m8); m=0 (reference); ncol1=21; shift=0; ncol=21; tscCACAGCTGCyrCAGCTgc ; Alignment reference a 13 7 7 3 70 1 80 0 0 8 0 1 4 23 1 64 0 2 1 13 13 c 12 25 50 62 3 81 2 2 84 2 0 78 25 5 76 3 4 78 7 19 48 g 14 43 11 15 8 2 1 81 0 1 84 0 1 53 1 8 77 1 4 45 9 t 45 9 16 4 3 0 1 1 0 73 0 5 54 3 6 9 3 3 72 7 14
MA1485.1_rc_shift1 (FERD3L_rc)				; local_words_6nt_m8 versus MA1485.1_rc (FERD3L_rc); m=1/13; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.545349; -GTrACAGCTGkyrC------ ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0
MA0832.1_shift1 (Tcf21)				; local_words_6nt_m8 versus MA0832.1 (Tcf21); m=2/13; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.493316; -ryAACAGCTGTTry------ ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 0 0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 0 0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 0 0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0 0 0 0 0
MA0500.2_shift2 (MYOG)				; local_words_6nt_m8 versus MA0500.2 (MYOG); m=3/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.48726; --sarCAGCTGyts------- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0
MA0499.2_rc_shift1 (MYOD1_rc)				; local_words_6nt_m8 versus MA0499.2_rc (MYOD1_rc); m=4/13; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.478241; -rkrACAGGTGcwg------- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0 0 0
MA1619.1_shift2 (Ptf1a(var.2))				; local_words_6nt_m8 versus MA1619.1 (Ptf1a(var.2)); m=5/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.474223; --rmaCAGCTGtky------- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0
MA1641.1_shift2 (MYF5)				; local_words_6nt_m8 versus MA1641.1 (MYF5); m=6/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.470617; --gvaCAGCTGtbc------- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0
MA0521.1_shift3 (Tcf12)				; local_words_6nt_m8 versus MA0521.1 (Tcf12); m=7/13; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.452695; ---rRCAGCTGswg------- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0 0 0
MA1631.1_shift2 (ASCL1(var.2))				; local_words_6nt_m8 versus MA1631.1 (ASCL1(var.2)); m=8/13; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.434757; --cdgCACCTGCysc------ ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0 0 0
MA0048.2_shift3 (NHLH1)				; local_words_6nt_m8 versus MA0048.2 (NHLH1); m=9/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.415885; ---cGCAGCTGCk-------- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0 0 0
MA0816.1_shift3 (Ascl2)				; local_words_6nt_m8 versus MA0816.1 (Ascl2); m=10/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.414733; ---arCAGCTGyy-------- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0 0 0
MA1635.1_shift3 (BHLHE22(var.2))				; local_words_6nt_m8 versus MA1635.1 (BHLHE22(var.2)); m=11/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.408892; ---csCAGCTGsg-------- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0 0 0 0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)				; local_words_6nt_m8 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/13; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.407501; ---rrCAGCTGbt-------- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0 0 0
MA1100.2_rc_shift3 (ASCL1_rc)				; local_words_6nt_m8 versus MA1100.2_rc (ASCL1_rc); m=13/13; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.404976; ---rgCAGCTGyy-------- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0 0