Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m13/peak-motifs_local_words_7nt_m13_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m13/peak-motifs_local_words_7nt_m13.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m13/peak-motifs_local_words_7nt_m13_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m13/peak-motifs_local_words_7nt_m13.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m13/peak-motifs_local_words_7nt_m13_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m13/peak-motifs_local_words_7nt_m13_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m13/peak-motifs_local_words_7nt_m13_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m13/peak-motifs_local_words_7nt_m13_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m13/peak-motifs_local_words_7nt_m13_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m13/peak-motifs_local_words_7nt_m13_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m13/peak-motifs_local_words_7nt_m13.tf
		file1	1	13	436
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
local_words_7nt_m13 MA1631.1 local_words_7nt_m13local_words_7nt_m13 ASCL1(var.2) 0.949 0.949 13 13 13 13 1.0000 1.0000 1.0000 D 0
local_words_7nt_m13 MA0830.2 local_words_7nt_m13local_words_7nt_m13 TCF4 0.935 0.935 13 13 13 13 1.0000 1.0000 1.0000 D 0
local_words_7nt_m13 MA0745.2 local_words_7nt_m13local_words_7nt_m13 SNAI2 0.820 0.820 13 13 13 13 1.0000 1.0000 1.0000 D 0
local_words_7nt_m13 MA0499.2 local_words_7nt_m13local_words_7nt_m13 MYOD1 0.806 0.806 13 13 13 13 1.0000 1.0000 1.0000 D 0
local_words_7nt_m13 MA1648.1 local_words_7nt_m13local_words_7nt_m13 TCF12(var.2) 0.941 0.796 13 11 11 13 0.8462 0.8462 1.0000 D 1
local_words_7nt_m13 MA0522.3 local_words_7nt_m13local_words_7nt_m13 TCF3 0.936 0.792 13 11 11 13 0.8462 0.8462 1.0000 D 1
local_words_7nt_m13 MA0103.3 local_words_7nt_m13local_words_7nt_m13 ZEB1 0.887 0.750 13 11 11 13 0.8462 0.8462 1.0000 D 1
local_words_7nt_m13 MA1621.1 local_words_7nt_m13local_words_7nt_m13 Rbpjl 0.808 0.750 13 14 13 14 0.9286 1.0000 0.9286 D -1
local_words_7nt_m13 MA1620.1 local_words_7nt_m13local_words_7nt_m13 Ptf1a(var.3) 0.800 0.738 13 12 12 13 0.9231 0.9231 1.0000 D 0
local_words_7nt_m13 MA0500.2 local_words_7nt_m13local_words_7nt_m13 MYOG 0.772 0.713 13 12 12 13 0.9231 0.9231 1.0000 D 0
local_words_7nt_m13 MA1558.1 local_words_7nt_m13local_words_7nt_m13 SNAI1 0.923 0.710 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m13 MA1559.1 local_words_7nt_m13local_words_7nt_m13 SNAI3 0.901 0.693 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m13 MA0521.1 local_words_7nt_m13local_words_7nt_m13 Tcf12 0.783 0.663 13 11 11 13 0.8462 0.8462 1.0000 R 0
local_words_7nt_m13 MA1100.2 local_words_7nt_m13local_words_7nt_m13 ASCL1 0.838 0.645 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m13 MA0820.1 local_words_7nt_m13local_words_7nt_m13 FIGLA 0.823 0.633 13 10 10 13 0.7692 0.7692 1.0000 D 1
local_words_7nt_m13 MA0816.1 local_words_7nt_m13local_words_7nt_m13 Ascl2 0.816 0.627 13 10 10 13 0.7692 0.7692 1.0000 D 1
local_words_7nt_m13 MA0048.2 local_words_7nt_m13local_words_7nt_m13 NHLH1 0.805 0.619 13 10 10 13 0.7692 0.7692 1.0000 D 1
local_words_7nt_m13 MA0744.2 local_words_7nt_m13local_words_7nt_m13 SCRT2 0.730 0.593 13 16 13 16 0.8125 1.0000 0.8125 R 0
local_words_7nt_m13 MA0743.2 local_words_7nt_m13local_words_7nt_m13 SCRT1 0.723 0.587 13 16 13 16 0.8125 1.0000 0.8125 R 0
local_words_7nt_m13 MA1472.1 local_words_7nt_m13local_words_7nt_m13 BHLHA15(var.2) 0.743 0.571 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m13 MA1628.1 local_words_7nt_m13local_words_7nt_m13 Zic1::Zic2 0.795 0.568 13 11 10 14 0.7143 0.7692 0.9091 R 3
local_words_7nt_m13 MA1635.1 local_words_7nt_m13local_words_7nt_m13 BHLHE22(var.2) 0.733 0.564 13 10 10 13 0.7692 0.7692 1.0000 D 1
local_words_7nt_m13 MA1560.1 local_words_7nt_m13local_words_7nt_m13 SOHLH2 0.732 0.563 13 10 10 13 0.7692 0.7692 1.0000 D 1
local_words_7nt_m13 MA0825.1 local_words_7nt_m13local_words_7nt_m13 MNT 0.718 0.552 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m13 MA0058.3 local_words_7nt_m13local_words_7nt_m13 MAX 0.709 0.545 13 10 10 13 0.7692 0.7692 1.0000 D 1
local_words_7nt_m13 MA1629.1 local_words_7nt_m13local_words_7nt_m13 Zic2 0.761 0.523 13 14 11 16 0.6875 0.8462 0.7857 R 2
local_words_7nt_m13 MA1529.1 local_words_7nt_m13local_words_7nt_m13 NHLH2 0.710 0.513 13 18 13 18 0.7222 1.0000 0.7222 R -3
local_words_7nt_m13 MA0807.1 local_words_7nt_m13local_words_7nt_m13 TBX5 0.810 0.498 13 8 8 13 0.6154 0.6154 1.0000 R 0
local_words_7nt_m13 MA0806.1 local_words_7nt_m13local_words_7nt_m13 TBX4 0.797 0.491 13 8 8 13 0.6154 0.6154 1.0000 R 0
local_words_7nt_m13 MA0803.1 local_words_7nt_m13local_words_7nt_m13 TBX15 0.755 0.465 13 8 8 13 0.6154 0.6154 1.0000 R 0
local_words_7nt_m13 MA1567.1 local_words_7nt_m13local_words_7nt_m13 TBX6 0.705 0.453 13 10 9 14 0.6429 0.6923 0.9000 R -1
local_words_7nt_m13 MA0805.1 local_words_7nt_m13local_words_7nt_m13 TBX1 0.733 0.451 13 8 8 13 0.6154 0.6154 1.0000 R 0
local_words_7nt_m13 MA0801.1 local_words_7nt_m13local_words_7nt_m13 MGA 0.722 0.444 13 8 8 13 0.6154 0.6154 1.0000 R 0
local_words_7nt_m13 MA0622.1 local_words_7nt_m13local_words_7nt_m13 Mlxip 0.708 0.436 13 8 8 13 0.6154 0.6154 1.0000 R 2
local_words_7nt_m13 MA0802.1 local_words_7nt_m13local_words_7nt_m13 TBR1 0.752 0.401 13 10 8 15 0.5333 0.6154 0.8000 R -2 
 Host name	pedagogix
 Job started	2020-04-13.232014
 Job done	2020-04-13.232101
 Seconds	6.95
	user	6.95
	system	0.61
	cuser	36.29
;	csystem	1.89