One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m16/peak-motifs_local_words_7nt_m16.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m16/peak-motifs_local_words_7nt_m16_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_7nt_m16_shift3 ; 36 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m16_shift3 (local_words_7nt_m16local_words_7nt_m16)
; local_words_7nt_m16 (local_words_7nt_m16local_words_7nt_m16); m=0 (reference); ncol1=13; shift=3; ncol=18; ---rsAGCAGGTGchg-- ; Alignment reference a 0 0 0 132 81 374 23 0 435 1 6 0 0 30 112 100 0 0 c 0 0 0 69 129 6 2 439 2 4 29 5 2 276 112 101 0 0 g 0 0 0 182 154 58 416 3 5 437 402 1 440 69 105 166 0 0 t 0 0 0 59 78 4 1 0 0 0 5 436 0 67 113 75 0 0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; local_words_7nt_m16 versus MA1631.1_rc (ASCL1(var.2)_rc); m=1/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.948896; ---gsrGCAGGTGchg-- ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0

MA0830.2_rc_shift3 (TCF4_rc)
; local_words_7nt_m16 versus MA0830.2_rc (TCF4_rc); m=2/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.934645; ---ssggCAGGTGccg-- ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; local_words_7nt_m16 versus MA0745.2_rc (SNAI2_rc); m=3/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.818658; ---rykACAGGTGcrt-- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0

MA0499.2_rc_shift3 (MYOD1_rc)
; local_words_7nt_m16 versus MA0499.2_rc (MYOD1_rc); m=4/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.803792; ---rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; local_words_7nt_m16 versus MA1648.1_rc (TCF12(var.2)_rc); m=5/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.796656; ----srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0522.3_rc_shift4 (TCF3_rc)
; local_words_7nt_m16 versus MA0522.3_rc (TCF3_rc); m=6/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.791994; ----ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0

MA0103.3_rc_shift4 (ZEB1_rc)
; local_words_7nt_m16 versus MA0103.3_rc (ZEB1_rc); m=7/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.750327; ----sssCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0 0

MA1621.1_rc_shift3 (Rbpjl_rc)
; local_words_7nt_m16 versus MA1621.1_rc (Rbpjl_rc); m=8/35; ncol2=14; w=13; offset=0; strand=R; shift=3; score=0.749849; ---grsaCAGGTGtkbs- ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; local_words_7nt_m16 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=9/35; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.737774; ----rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA0500.2_rc_shift4 (MYOG_rc)
; local_words_7nt_m16 versus MA0500.2_rc (MYOG_rc); m=10/35; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.712281; ----sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1558.1_shift5 (SNAI1)
; local_words_7nt_m16 versus MA1558.1 (SNAI1); m=11/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.709389; -----drCAGGTGyr--- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0

MA1559.1_shift5 (SNAI3)
; local_words_7nt_m16 versus MA1559.1 (SNAI3); m=12/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.692212; -----arCAGGTGya--- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0

MA0521.1_shift5 (Tcf12)
; local_words_7nt_m16 versus MA0521.1 (Tcf12); m=13/35; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.662065; -----rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1100.2_shift5 (ASCL1)
; local_words_7nt_m16 versus MA1100.2 (ASCL1); m=14/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.644113; -----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; local_words_7nt_m16 versus MA0820.1_rc (FIGLA_rc); m=15/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.633104; -----wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA0816.1_rc_shift5 (Ascl2_rc)
; local_words_7nt_m16 versus MA0816.1_rc (Ascl2_rc); m=16/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.627509; -----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; local_words_7nt_m16 versus MA0048.2_rc (NHLH1_rc); m=17/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.619245; -----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA0744.2_shift0 (SCRT2)
; local_words_7nt_m16 versus MA0744.2 (SCRT2); m=18/35; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.594099; rrwkCAACAGGTggtw-- ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 0 0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 0 0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 0 0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0 0 0

MA0743.2_shift0 (SCRT1)
; local_words_7nt_m16 versus MA0743.2 (SCRT1); m=19/35; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.588023; wawkCAACAGGTGgtw-- ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 0 0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 0 0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 0 0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0 0 0

MA1472.1_shift5 (BHLHA15(var.2))
; local_words_7nt_m16 versus MA1472.1 (BHLHA15(var.2)); m=20/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.57142; -----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1628.1_shift2 (Zic1::Zic2)
; local_words_7nt_m16 versus MA1628.1 (Zic1::Zic2); m=21/35; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.570163; --cvCAGCAGGsr----- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0 0 0

MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)
; local_words_7nt_m16 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=22/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.56339; -----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA1560.1_rc_shift5 (SOHLH2_rc)
; local_words_7nt_m16 versus MA1560.1_rc (SOHLH2_rc); m=23/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.562778; -----ygCACGTGcr--- ; cor=; Ncor= a 0 0 0 0 0 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 0 0 c 0 0 0 0 0 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 0 0 g 0 0 0 0 0 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 0 0 t 0 0 0 0 0 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0 0 0

MA0825.1_shift5 (MNT)
; local_words_7nt_m16 versus MA0825.1 (MNT); m=24/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.552045; -----avCACGTGcy--- ; cor=; Ncor= a 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 0 0 c 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 0 0 g 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 0 0 t 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0 0 0

MA0058.3_rc_shift5 (MAX_rc)
; local_words_7nt_m16 versus MA0058.3_rc (MAX_rc); m=25/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.545085; -----rgCACGTGkt--- ; cor=; Ncor= a 0 0 0 0 0 2543.0 1446.0 36.0 6876.0 19.0 229.0 38.0 0.0 637.0 719.0 0 0 0 c 0 0 0 0 0 986.0 1638.0 6876.0 20.0 6876.0 7.0 87.0 0.0 1514.0 1295.0 0 0 0 g 0 0 0 0 0 2225.0 2450.0 27.0 159.0 39.0 6876.0 0.0 6876.0 2809.0 1556.0 0 0 0 t 0 0 0 0 0 1122.0 1341.0 0.0 69.0 329.0 0.0 6876.0 39.0 1915.0 3307.0 0 0 0

MA1629.1_shift0 (Zic2)
; local_words_7nt_m16 versus MA1629.1 (Zic2); m=26/35; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.525132; mkCaCAGCAGGrrg---- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0 0 0

MA1529.1_shift1 (NHLH2)
; local_words_7nt_m16 versus MA1529.1 (NHLH2); m=27/35; ncol2=18; w=13; offset=-2; strand=D; shift=1; score=0.512495; -ggGyMGCAGCTGCGyCm ; cor=; Ncor= a 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 c 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 g 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 t 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0

MA0807.1_shift8 (TBX5)
; local_words_7nt_m16 versus MA0807.1 (TBX5); m=28/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.499258; --------AGGTGTkA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 0 0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 0 0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 0 0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0 0 0

MA0806.1_shift8 (TBX4)
; local_words_7nt_m16 versus MA0806.1 (TBX4); m=29/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.491578; --------AGGTGTgA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 0 0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 0 0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 0 0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0 0 0

MA0803.1_shift8 (TBX15)
; local_words_7nt_m16 versus MA0803.1 (TBX15); m=30/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.465853; --------AGGTGTGA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 0 0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 0 0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 0 0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0 0 0

MA1567.1_shift7 (TBX6)
; local_words_7nt_m16 versus MA1567.1 (TBX6); m=31/35; ncol2=10; w=9; offset=4; strand=D; shift=7; score=0.454093; -------ragGTGTkAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 2998.0 11087.0 1882.0 58.0 44.0 14.0 552.0 1430.0 11087.0 4550.0 0 c 0 0 0 0 0 0 0 1630.0 1173.0 2913.0 63.0 1002.0 0.0 3053.0 4876.0 652.0 2066.0 0 g 0 0 0 0 0 0 0 4003.0 3347.0 11087.0 11087.0 0.0 11087.0 320.0 11087.0 2251.0 2141.0 0 t 0 0 0 0 0 0 0 2456.0 2157.0 1058.0 0.0 11087.0 12.0 11087.0 5964.0 713.0 2330.0 0

MA0805.1_shift8 (TBX1)
; local_words_7nt_m16 versus MA0805.1 (TBX1); m=32/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score= 0.4518; --------AGGTGTGA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 0 0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 0 0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 0 0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0 0 0

MA0801.1_shift8 (MGA)
; local_words_7nt_m16 versus MA0801.1 (MGA); m=33/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.445354; --------AGGTGTGA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 0 0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 0 0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 0 0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0 0 0

MA0622.1_shift6 (Mlxip)
; local_words_7nt_m16 versus MA0622.1 (Mlxip); m=34/35; ncol2=8; w=8; offset=3; strand=D; shift=6; score=0.436234; ------bCACGTGk---- ; cor=; Ncor= a 0 0 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 0 0 c 0 0 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 0 0 g 0 0 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 0 0 t 0 0 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0 0 0

MA0802.1_shift8 (TBR1)
; local_words_7nt_m16 versus MA0802.1 (TBR1); m=35/35; ncol2=10; w=8; offset=5; strand=D; shift=8; score=0.40189; --------AGGTGTGAAa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34509.0 6880.0 70.0 39.0 0.0 2386.0 1175.0 34509.0 25869.0 18507.0 c 0 0 0 0 0 0 0 0 359.0 3255.0 254.0 1759.0 6.0 4742.0 2551.0 90.0 2575.0 5619.0 g 0 0 0 0 0 0 0 0 3329.0 34509.0 34509.0 88.0 34509.0 157.0 34509.0 584.0 1488.0 4537.0 t 0 0 0 0 0 0 0 0 1433.0 4480.0 213.0 34509.0 4.0 34509.0 7001.0 205.0 4576.0 5846.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_7nt_m16_shift3 (local_words_7nt_m16local_words_7nt_m16)				; local_words_7nt_m16 (local_words_7nt_m16local_words_7nt_m16); m=0 (reference); ncol1=13; shift=3; ncol=18; ---rsAGCAGGTGchg-- ; Alignment reference a 0 0 0 132 81 374 23 0 435 1 6 0 0 30 112 100 0 0 c 0 0 0 69 129 6 2 439 2 4 29 5 2 276 112 101 0 0 g 0 0 0 182 154 58 416 3 5 437 402 1 440 69 105 166 0 0 t 0 0 0 59 78 4 1 0 0 0 5 436 0 67 113 75 0 0
MA1631.1_rc_shift3 (ASCL1(var.2)_rc)				; local_words_7nt_m16 versus MA1631.1_rc (ASCL1(var.2)_rc); m=1/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.948896; ---gsrGCAGGTGchg-- ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0
MA0830.2_rc_shift3 (TCF4_rc)				; local_words_7nt_m16 versus MA0830.2_rc (TCF4_rc); m=2/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.934645; ---ssggCAGGTGccg-- ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0
MA0745.2_rc_shift3 (SNAI2_rc)				; local_words_7nt_m16 versus MA0745.2_rc (SNAI2_rc); m=3/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.818658; ---rykACAGGTGcrt-- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0
MA0499.2_rc_shift3 (MYOD1_rc)				; local_words_7nt_m16 versus MA0499.2_rc (MYOD1_rc); m=4/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.803792; ---rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0
MA1648.1_rc_shift4 (TCF12(var.2)_rc)				; local_words_7nt_m16 versus MA1648.1_rc (TCF12(var.2)_rc); m=5/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.796656; ----srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0
MA0522.3_rc_shift4 (TCF3_rc)				; local_words_7nt_m16 versus MA0522.3_rc (TCF3_rc); m=6/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.791994; ----ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0
MA0103.3_rc_shift4 (ZEB1_rc)				; local_words_7nt_m16 versus MA0103.3_rc (ZEB1_rc); m=7/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.750327; ----sssCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0 0
MA1621.1_rc_shift3 (Rbpjl_rc)				; local_words_7nt_m16 versus MA1621.1_rc (Rbpjl_rc); m=8/35; ncol2=14; w=13; offset=0; strand=R; shift=3; score=0.749849; ---grsaCAGGTGtkbs- ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)				; local_words_7nt_m16 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=9/35; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.737774; ----rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0
MA0500.2_rc_shift4 (MYOG_rc)				; local_words_7nt_m16 versus MA0500.2_rc (MYOG_rc); m=10/35; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.712281; ----sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA1558.1_shift5 (SNAI1)				; local_words_7nt_m16 versus MA1558.1 (SNAI1); m=11/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.709389; -----drCAGGTGyr--- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0
MA1559.1_shift5 (SNAI3)				; local_words_7nt_m16 versus MA1559.1 (SNAI3); m=12/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.692212; -----arCAGGTGya--- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0
MA0521.1_shift5 (Tcf12)				; local_words_7nt_m16 versus MA0521.1 (Tcf12); m=13/35; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.662065; -----rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0
MA1100.2_shift5 (ASCL1)				; local_words_7nt_m16 versus MA1100.2 (ASCL1); m=14/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.644113; -----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA0820.1_rc_shift5 (FIGLA_rc)				; local_words_7nt_m16 versus MA0820.1_rc (FIGLA_rc); m=15/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.633104; -----wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0
MA0816.1_rc_shift5 (Ascl2_rc)				; local_words_7nt_m16 versus MA0816.1_rc (Ascl2_rc); m=16/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.627509; -----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0
MA0048.2_rc_shift5 (NHLH1_rc)				; local_words_7nt_m16 versus MA0048.2_rc (NHLH1_rc); m=17/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.619245; -----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0
MA0744.2_shift0 (SCRT2)				; local_words_7nt_m16 versus MA0744.2 (SCRT2); m=18/35; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.594099; rrwkCAACAGGTggtw-- ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 0 0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 0 0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 0 0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0 0 0
MA0743.2_shift0 (SCRT1)				; local_words_7nt_m16 versus MA0743.2 (SCRT1); m=19/35; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.588023; wawkCAACAGGTGgtw-- ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 0 0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 0 0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 0 0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0 0 0
MA1472.1_shift5 (BHLHA15(var.2))				; local_words_7nt_m16 versus MA1472.1 (BHLHA15(var.2)); m=20/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.57142; -----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0
MA1628.1_shift2 (Zic1::Zic2)				; local_words_7nt_m16 versus MA1628.1 (Zic1::Zic2); m=21/35; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.570163; --cvCAGCAGGsr----- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0 0 0
MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)				; local_words_7nt_m16 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=22/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.56339; -----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0
MA1560.1_rc_shift5 (SOHLH2_rc)				; local_words_7nt_m16 versus MA1560.1_rc (SOHLH2_rc); m=23/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.562778; -----ygCACGTGcr--- ; cor=; Ncor= a 0 0 0 0 0 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 0 0 c 0 0 0 0 0 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 0 0 g 0 0 0 0 0 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 0 0 t 0 0 0 0 0 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0 0 0
MA0825.1_shift5 (MNT)				; local_words_7nt_m16 versus MA0825.1 (MNT); m=24/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.552045; -----avCACGTGcy--- ; cor=; Ncor= a 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 0 0 c 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 0 0 g 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 0 0 t 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0 0 0
MA0058.3_rc_shift5 (MAX_rc)				; local_words_7nt_m16 versus MA0058.3_rc (MAX_rc); m=25/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.545085; -----rgCACGTGkt--- ; cor=; Ncor= a 0 0 0 0 0 2543.0 1446.0 36.0 6876.0 19.0 229.0 38.0 0.0 637.0 719.0 0 0 0 c 0 0 0 0 0 986.0 1638.0 6876.0 20.0 6876.0 7.0 87.0 0.0 1514.0 1295.0 0 0 0 g 0 0 0 0 0 2225.0 2450.0 27.0 159.0 39.0 6876.0 0.0 6876.0 2809.0 1556.0 0 0 0 t 0 0 0 0 0 1122.0 1341.0 0.0 69.0 329.0 0.0 6876.0 39.0 1915.0 3307.0 0 0 0
MA1629.1_shift0 (Zic2)				; local_words_7nt_m16 versus MA1629.1 (Zic2); m=26/35; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.525132; mkCaCAGCAGGrrg---- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0 0 0
MA1529.1_shift1 (NHLH2)				; local_words_7nt_m16 versus MA1529.1 (NHLH2); m=27/35; ncol2=18; w=13; offset=-2; strand=D; shift=1; score=0.512495; -ggGyMGCAGCTGCGyCm ; cor=; Ncor= a 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 c 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 g 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 t 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0
MA0807.1_shift8 (TBX5)				; local_words_7nt_m16 versus MA0807.1 (TBX5); m=28/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.499258; --------AGGTGTkA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 0 0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 0 0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 0 0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0 0 0
MA0806.1_shift8 (TBX4)				; local_words_7nt_m16 versus MA0806.1 (TBX4); m=29/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.491578; --------AGGTGTgA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 0 0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 0 0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 0 0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0 0 0
MA0803.1_shift8 (TBX15)				; local_words_7nt_m16 versus MA0803.1 (TBX15); m=30/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.465853; --------AGGTGTGA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 0 0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 0 0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 0 0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0 0 0
MA1567.1_shift7 (TBX6)				; local_words_7nt_m16 versus MA1567.1 (TBX6); m=31/35; ncol2=10; w=9; offset=4; strand=D; shift=7; score=0.454093; -------ragGTGTkAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 2998.0 11087.0 1882.0 58.0 44.0 14.0 552.0 1430.0 11087.0 4550.0 0 c 0 0 0 0 0 0 0 1630.0 1173.0 2913.0 63.0 1002.0 0.0 3053.0 4876.0 652.0 2066.0 0 g 0 0 0 0 0 0 0 4003.0 3347.0 11087.0 11087.0 0.0 11087.0 320.0 11087.0 2251.0 2141.0 0 t 0 0 0 0 0 0 0 2456.0 2157.0 1058.0 0.0 11087.0 12.0 11087.0 5964.0 713.0 2330.0 0
MA0805.1_shift8 (TBX1)				; local_words_7nt_m16 versus MA0805.1 (TBX1); m=32/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score= 0.4518; --------AGGTGTGA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 0 0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 0 0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 0 0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0 0 0
MA0801.1_shift8 (MGA)				; local_words_7nt_m16 versus MA0801.1 (MGA); m=33/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.445354; --------AGGTGTGA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 0 0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 0 0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 0 0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0 0 0
MA0622.1_shift6 (Mlxip)				; local_words_7nt_m16 versus MA0622.1 (Mlxip); m=34/35; ncol2=8; w=8; offset=3; strand=D; shift=6; score=0.436234; ------bCACGTGk---- ; cor=; Ncor= a 0 0 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 0 0 c 0 0 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 0 0 g 0 0 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 0 0 t 0 0 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0 0 0
MA0802.1_shift8 (TBR1)				; local_words_7nt_m16 versus MA0802.1 (TBR1); m=35/35; ncol2=10; w=8; offset=5; strand=D; shift=8; score=0.40189; --------AGGTGTGAAa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34509.0 6880.0 70.0 39.0 0.0 2386.0 1175.0 34509.0 25869.0 18507.0 c 0 0 0 0 0 0 0 0 359.0 3255.0 254.0 1759.0 6.0 4742.0 2551.0 90.0 2575.0 5619.0 g 0 0 0 0 0 0 0 0 3329.0 34509.0 34509.0 88.0 34509.0 157.0 34509.0 584.0 1488.0 4537.0 t 0 0 0 0 0 0 0 0 1433.0 4480.0 213.0 34509.0 4.0 34509.0 7001.0 205.0 4576.0 5846.0