Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20.tf
		file1	1	17	487
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
local_words_7nt_m20 MA1529.1 local_words_7nt_m20local_words_7nt_m20 NHLH2 0.808 0.764 17 18 17 18 0.9444 1.0000 0.9444 R -1
local_words_7nt_m20 MA0500.2 local_words_7nt_m20local_words_7nt_m20 MYOG 0.882 0.623 17 12 12 17 0.7059 0.7059 1.0000 D 2
local_words_7nt_m20 MA1485.1 local_words_7nt_m20local_words_7nt_m20 FERD3L 0.727 0.598 17 14 14 17 0.8235 0.8235 1.0000 R 1
local_words_7nt_m20 MA1631.1 local_words_7nt_m20local_words_7nt_m20 ASCL1(var.2) 0.749 0.573 17 13 13 17 0.7647 0.7647 1.0000 D 2
local_words_7nt_m20 MA0830.2 local_words_7nt_m20local_words_7nt_m20 TCF4 0.737 0.564 17 13 13 17 0.7647 0.7647 1.0000 R 1
local_words_7nt_m20 MA0521.1 local_words_7nt_m20local_words_7nt_m20 Tcf12 0.864 0.559 17 11 11 17 0.6471 0.6471 1.0000 R 2
local_words_7nt_m20 MA0048.2 local_words_7nt_m20local_words_7nt_m20 NHLH1 0.939 0.552 17 10 10 17 0.5882 0.5882 1.0000 D 3
local_words_7nt_m20 MA0816.1 local_words_7nt_m20local_words_7nt_m20 Ascl2 0.932 0.548 17 10 10 17 0.5882 0.5882 1.0000 R 3
local_words_7nt_m20 MA1619.1 local_words_7nt_m20local_words_7nt_m20 Ptf1a(var.2) 0.759 0.536 17 12 12 17 0.7059 0.7059 1.0000 R 2
local_words_7nt_m20 MA1100.2 local_words_7nt_m20local_words_7nt_m20 ASCL1 0.905 0.532 17 10 10 17 0.5882 0.5882 1.0000 R 3
local_words_7nt_m20 MA1641.1 local_words_7nt_m20local_words_7nt_m20 MYF5 0.743 0.525 17 12 12 17 0.7059 0.7059 1.0000 D 2
local_words_7nt_m20 MA1635.1 local_words_7nt_m20local_words_7nt_m20 BHLHE22(var.2) 0.879 0.517 17 10 10 17 0.5882 0.5882 1.0000 R 3
local_words_7nt_m20 MA1472.1 local_words_7nt_m20local_words_7nt_m20 BHLHA15(var.2) 0.841 0.494 17 10 10 17 0.5882 0.5882 1.0000 R 3
local_words_7nt_m20 MA1648.1 local_words_7nt_m20local_words_7nt_m20 TCF12(var.2) 0.733 0.474 17 11 11 17 0.6471 0.6471 1.0000 D 3
local_words_7nt_m20 MA0522.3 local_words_7nt_m20local_words_7nt_m20 TCF3 0.721 0.466 17 11 11 17 0.6471 0.6471 1.0000 D 3
local_words_7nt_m20 MA0691.1 local_words_7nt_m20local_words_7nt_m20 TFAP4 0.766 0.451 17 10 10 17 0.5882 0.5882 1.0000 R 3
local_words_7nt_m20 MA1467.1 local_words_7nt_m20local_words_7nt_m20 ATOH1(var.2) 0.762 0.448 17 10 10 17 0.5882 0.5882 1.0000 R 3
local_words_7nt_m20 MA0665.1 local_words_7nt_m20local_words_7nt_m20 MSC 0.733 0.431 17 10 10 17 0.5882 0.5882 1.0000 D 3
local_words_7nt_m20 MA1558.1 local_words_7nt_m20local_words_7nt_m20 SNAI1 0.709 0.417 17 10 10 17 0.5882 0.5882 1.0000 R 3
local_words_7nt_m20 MA1559.1 local_words_7nt_m20local_words_7nt_m20 SNAI3 0.703 0.413 17 10 10 17 0.5882 0.5882 1.0000 R 3 
 Host name	pedagogix
 Job started	2020-04-13.232339
 Job done	2020-04-13.232402
 Seconds	3.79
	user	3.79
	system	0.37
	cuser	18.23
;	csystem	1.12