One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m20/peak-motifs_local_words_7nt_m20_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_7nt_m20_shift1 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m20_shift1 (local_words_7nt_m20local_words_7nt_m20)
; local_words_7nt_m20 (local_words_7nt_m20local_words_7nt_m20); m=0 (reference); ncol1=17; shift=1; ncol=18; -ssccGCAGCTGCTGCyg ; Alignment reference a 0 109 100 45 111 31 0 459 1 1 12 0 1 13 20 28 76 80 c 0 154 122 276 221 27 486 16 5 482 11 1 466 29 59 356 161 112 g 0 146 192 100 67 416 0 4 481 3 2 485 5 21 394 41 102 183 t 0 78 73 66 88 13 1 8 0 1 462 1 15 424 14 62 148 112

MA1529.1_rc_shift0 (NHLH2_rc)
; local_words_7nt_m20 versus MA1529.1_rc (NHLH2_rc); m=1/20; ncol2=18; w=17; offset=-1; strand=R; shift=0; score=0.763546; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA0500.2_shift3 (MYOG)
; local_words_7nt_m20 versus MA0500.2 (MYOG); m=2/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.622719; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_7nt_m20 versus MA1485.1_rc (FERD3L_rc); m=3/20; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.598432; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; local_words_7nt_m20 versus MA1631.1 (ASCL1(var.2)); m=4/20; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.572776; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; local_words_7nt_m20 versus MA0830.2_rc (TCF4_rc); m=5/20; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.563836; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_7nt_m20 versus MA0521.1_rc (Tcf12_rc); m=6/20; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.558763; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_7nt_m20 versus MA0048.2 (NHLH1); m=7/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.552395; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_7nt_m20 versus MA0816.1_rc (Ascl2_rc); m=8/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.548101; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_7nt_m20 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/20; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.535845; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_7nt_m20 versus MA1100.2_rc (ASCL1_rc); m=10/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.532067; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_7nt_m20 versus MA1641.1 (MYF5); m=11/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.524636; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_7nt_m20 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=12/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.516868; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_7nt_m20 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=13/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.49446; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_7nt_m20 versus MA1648.1 (TCF12(var.2)); m=14/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.474165; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; local_words_7nt_m20 versus MA0522.3 (TCF3); m=15/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.466379; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_7nt_m20 versus MA0691.1_rc (TFAP4_rc); m=16/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.450569; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_7nt_m20 versus MA1467.1_rc (ATOH1(var.2)_rc); m=17/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.448207; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_7nt_m20 versus MA0665.1 (MSC); m=18/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.431209; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1558.1_rc_shift4 (SNAI1_rc)
; local_words_7nt_m20 versus MA1558.1_rc (SNAI1_rc); m=19/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.417171; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA1559.1_rc_shift4 (SNAI3_rc)
; local_words_7nt_m20 versus MA1559.1_rc (SNAI3_rc); m=20/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.413416; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_7nt_m20_shift1 (local_words_7nt_m20local_words_7nt_m20)				; local_words_7nt_m20 (local_words_7nt_m20local_words_7nt_m20); m=0 (reference); ncol1=17; shift=1; ncol=18; -ssccGCAGCTGCTGCyg ; Alignment reference a 0 109 100 45 111 31 0 459 1 1 12 0 1 13 20 28 76 80 c 0 154 122 276 221 27 486 16 5 482 11 1 466 29 59 356 161 112 g 0 146 192 100 67 416 0 4 481 3 2 485 5 21 394 41 102 183 t 0 78 73 66 88 13 1 8 0 1 462 1 15 424 14 62 148 112
MA1529.1_rc_shift0 (NHLH2_rc)				; local_words_7nt_m20 versus MA1529.1_rc (NHLH2_rc); m=1/20; ncol2=18; w=17; offset=-1; strand=R; shift=0; score=0.763546; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0
MA0500.2_shift3 (MYOG)				; local_words_7nt_m20 versus MA0500.2 (MYOG); m=2/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.622719; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0
MA1485.1_rc_shift2 (FERD3L_rc)				; local_words_7nt_m20 versus MA1485.1_rc (FERD3L_rc); m=3/20; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.598432; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0
MA1631.1_shift3 (ASCL1(var.2))				; local_words_7nt_m20 versus MA1631.1 (ASCL1(var.2)); m=4/20; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.572776; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0
MA0830.2_rc_shift2 (TCF4_rc)				; local_words_7nt_m20 versus MA0830.2_rc (TCF4_rc); m=5/20; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.563836; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0
MA0521.1_rc_shift3 (Tcf12_rc)				; local_words_7nt_m20 versus MA0521.1_rc (Tcf12_rc); m=6/20; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.558763; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0
MA0048.2_shift4 (NHLH1)				; local_words_7nt_m20 versus MA0048.2 (NHLH1); m=7/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.552395; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0
MA0816.1_rc_shift4 (Ascl2_rc)				; local_words_7nt_m20 versus MA0816.1_rc (Ascl2_rc); m=8/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.548101; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0
MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)				; local_words_7nt_m20 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/20; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.535845; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0
MA1100.2_rc_shift4 (ASCL1_rc)				; local_words_7nt_m20 versus MA1100.2_rc (ASCL1_rc); m=10/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.532067; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0
MA1641.1_shift3 (MYF5)				; local_words_7nt_m20 versus MA1641.1 (MYF5); m=11/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.524636; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0
MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)				; local_words_7nt_m20 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=12/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.516868; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0
MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)				; local_words_7nt_m20 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=13/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.49446; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0
MA1648.1_shift4 (TCF12(var.2))				; local_words_7nt_m20 versus MA1648.1 (TCF12(var.2)); m=14/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.474165; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0
MA0522.3_shift4 (TCF3)				; local_words_7nt_m20 versus MA0522.3 (TCF3); m=15/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.466379; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0
MA0691.1_rc_shift4 (TFAP4_rc)				; local_words_7nt_m20 versus MA0691.1_rc (TFAP4_rc); m=16/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.450569; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0
MA1467.1_rc_shift4 (ATOH1(var.2)_rc)				; local_words_7nt_m20 versus MA1467.1_rc (ATOH1(var.2)_rc); m=17/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.448207; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0
MA0665.1_shift4 (MSC)				; local_words_7nt_m20 versus MA0665.1 (MSC); m=18/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.431209; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0
MA1558.1_rc_shift4 (SNAI1_rc)				; local_words_7nt_m20 versus MA1558.1_rc (SNAI1_rc); m=19/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.417171; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0
MA1559.1_rc_shift4 (SNAI3_rc)				; local_words_7nt_m20 versus MA1559.1_rc (SNAI3_rc); m=20/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.413416; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0