One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m22/peak-motifs_local_words_7nt_m22.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_7nt_m22/peak-motifs_local_words_7nt_m22_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_7nt_m22_shift4 ; 45 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
local_words_7nt_m22_shift4 (local_words_7nt_m22local_words_7nt_m22)     
; local_words_7nt_m22 (local_words_7nt_m22local_words_7nt_m22); m=0 (reference); ncol1=12; shift=4; ncol=16; ----srACAGGTGCmg
; Alignment reference
a	0	0	0	0	61	119	273	1	358	2	5	0	0	5	102	86
c	0	0	0	0	111	62	21	358	2	10	13	2	3	336	92	90
g	0	0	0	0	112	164	57	3	2	350	343	0	356	6	78	141
t	0	0	0	0	78	17	11	0	0	0	1	360	3	15	90	45
MA0499.2_rc_shift3 (MYOD1_rc) 
; local_words_7nt_m22 versus MA0499.2_rc (MYOD1_rc); m=1/44; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.900567; ---rkrACAGGTGcwg
; cor=; Ncor=
a	0	0	0	9358.0	8151.0	9000.0	29644.0	238.0	33130.0	330.0	1226.0	587.0	269.0	2245.0	9291.0	7728.0
c	0	0	0	7495.0	6202.0	4440.0	1699.0	33468.0	366.0	932.0	7336.0	849.0	354.0	21884.0	8444.0	8118.0
g	0	0	0	11760.0	10485.0	19052.0	2555.0	386.0	563.0	32504.0	25275.0	583.0	33328.0	5622.0	7103.0	11279.0
t	0	0	0	5687.0	9462.0	1808.0	402.0	208.0	241.0	534.0	463.0	32281.0	349.0	4549.0	9462.0	7175.0
MA0745.2_rc_shift3 (SNAI2_rc) 
; local_words_7nt_m22 versus MA0745.2_rc (SNAI2_rc); m=2/44; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.892939; ---rykACAGGTGcrt
; cor=; Ncor=
a	0	0	0	17906.0	8917.0	8747.0	37272.0	126.0	45229.0	344.0	234.0	227.0	622.0	2359.0	16344.0	9958.0
c	0	0	0	8219.0	12297.0	6281.0	1263.0	45257.0	196.0	487.0	326.0	424.0	323.0	26742.0	9490.0	11169.0
g	0	0	0	13476.0	11016.0	18771.0	6467.0	254.0	313.0	44739.0	45144.0	202.0	44463.0	6393.0	12314.0	10031.0
t	0	0	0	6215.0	13586.0	12017.0	814.0	179.0	78.0	246.0	112.0	44963.0	408.0	10322.0	7668.0	14658.0
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc) 
; local_words_7nt_m22 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=3/44; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.874493; ----rmaCAGGTGtky
; cor=; Ncor=
a	0	0	0	0	2811.0	2745.0	6633.0	142.0	10014.0	129.0	426.0	114.0	107.0	826.0	1599.0	2324.0
c	0	0	0	0	2183.0	3341.0	1516.0	9972.0	98.0	294.0	1182.0	84.0	113.0	1410.0	2379.0	2664.0
g	0	0	0	0	3004.0	2527.0	1615.0	109.0	94.0	9612.0	8567.0	60.0	9887.0	1188.0	3700.0	2469.0
t	0	0	0	0	2293.0	1678.0	527.0	68.0	85.0	256.0	116.0	10033.0	184.0	6867.0	2613.0	2834.0
MA0830.2_rc_shift3 (TCF4_rc) 
; local_words_7nt_m22 versus MA0830.2_rc (TCF4_rc); m=4/44; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.847174; ---ssggCAGGTGccg
; cor=; Ncor=
a	0	0	0	6827.0	6430.0	6126.0	3555.0	242.0	27398.0	188.0	751.0	512.0	215.0	1737.0	7059.0	6225.0
c	0	0	0	7662.0	7964.0	4933.0	5281.0	28432.0	679.0	1197.0	1733.0	1295.0	321.0	18498.0	8618.0	7140.0
g	0	0	0	9843.0	8658.0	12872.0	18935.0	540.0	1016.0	27724.0	26765.0	635.0	28686.0	5062.0	6754.0	10052.0
t	0	0	0	5133.0	6413.0	5534.0	1694.0	251.0	372.0	356.0	216.0	27023.0	243.0	4168.0	7034.0	6048.0
MA1631.1_rc_shift3 (ASCL1(var.2)_rc) 
; local_words_7nt_m22 versus MA1631.1_rc (ASCL1(var.2)_rc); m=5/44; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.815105; ---gsrGCAGGTGchg
; cor=; Ncor=
a	0	0	0	8032.0	7779.0	9017.0	2394.0	249.0	32756.0	151.0	815.0	618.0	289.0	3290.0	8805.0	7347.0
c	0	0	0	8356.0	8939.0	2966.0	2719.0	33411.0	492.0	607.0	3209.0	860.0	321.0	18576.0	8601.0	8371.0
g	0	0	0	11996.0	10555.0	17883.0	28844.0	445.0	740.0	33402.0	30169.0	563.0	33562.0	6654.0	7998.0	11805.0
t	0	0	0	5972.0	7083.0	4490.0	399.0	251.0	368.0	196.0	163.0	32315.0	184.0	5836.0	8952.0	6833.0
MA0103.3_rc_shift4 (ZEB1_rc) 
; local_words_7nt_m22 versus MA0103.3_rc (ZEB1_rc); m=6/44; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.801527; ----sssCAGGTGss-
; cor=; Ncor=
a	0	0	0	0	3856.0	3153.0	3408.0	129.0	19269.0	30.0	122.0	1.0	662.0	4715.0	3692.0	0
c	0	0	0	0	5828.0	6601.0	5178.0	19381.0	355.0	649.0	97.0	223.0	158.0	5179.0	5228.0	0
g	0	0	0	0	6955.0	6117.0	9561.0	178.0	501.0	19257.0	19878.0	0.0	19195.0	5550.0	7998.0	0
t	0	0	0	0	3490.0	4258.0	1982.0	441.0	4.0	193.0	32.0	19905.0	114.0	4685.0	3211.0	0
MA1559.1_shift5 (SNAI3) 
; local_words_7nt_m22 versus MA1559.1 (SNAI3); m=7/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.789006; -----arCAGGTGya-
; cor=; Ncor=
a	0	0	0	0	0	2952.0	3917.0	23.0	6248.0	118.0	0.0	0.0	94.0	432.0	4680.0	0
c	0	0	0	0	0	661.0	0.0	6248.0	0.0	29.0	18.0	12.0	0.0	6248.0	688.0	0
g	0	0	0	0	0	1525.0	2331.0	0.0	34.0	6248.0	6248.0	28.0	6248.0	1701.0	1569.0	0
t	0	0	0	0	0	1110.0	183.0	35.0	3.0	43.0	0.0	6248.0	30.0	3161.0	553.0	0
MA0521.1_shift5 (Tcf12) 
; local_words_7nt_m22 versus MA0521.1 (Tcf12); m=8/44; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.762815; -----rRCAGCTGswg
; cor=; Ncor=
a	0	0	0	0	0	6170.0	8820.0	0.0	12895.0	8.0	184.0	0.0	0.0	1875.0	3912.0	2863.0
c	0	0	0	0	0	1585.0	124.0	12895.0	0.0	0.0	10822.0	0.0	0.0	5527.0	2416.0	3005.0
g	0	0	0	0	0	5123.0	3951.0	0.0	0.0	12887.0	1889.0	0.0	12895.0	3811.0	2925.0	4836.0
t	0	0	0	0	0	17.0	0.0	0.0	0.0	0.0	0.0	12895.0	0.0	1682.0	3642.0	2191.0
MA1558.1_shift5 (SNAI1) 
; local_words_7nt_m22 versus MA1558.1 (SNAI1); m=9/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.760919; -----drCAGGTGyr-
; cor=; Ncor=
a	0	0	0	0	0	5274.0	6993.0	446.0	19982.0	1766.0	72.0	38.0	706.0	1639.0	10088.0	0
c	0	0	0	0	0	3187.0	501.0	19982.0	297.0	517.0	5.0	0.0	0.0	10938.0	4592.0	0
g	0	0	0	0	0	6410.0	12989.0	275.0	91.0	19982.0	19982.0	42.0	19982.0	5306.0	9894.0	0
t	0	0	0	0	0	5112.0	3518.0	340.0	568.0	306.0	28.0	19982.0	311.0	9044.0	6356.0	0
MA1621.1_rc_shift3 (Rbpjl_rc) 
; local_words_7nt_m22 versus MA1621.1_rc (Rbpjl_rc); m=10/44; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.759252; ---grsaCAGGTGtkb
; cor=; Ncor=
a	0	0	0	2286.0	2537.0	2179.0	5784.0	124.0	9313.0	96.0	363.0	86.0	137.0	782.0	1364.0	2210.0
c	0	0	0	2281.0	1958.0	2687.0	1581.0	9295.0	132.0	317.0	672.0	110.0	103.0	1492.0	1802.0	2549.0
g	0	0	0	3003.0	2884.0	3247.0	1718.0	131.0	144.0	9005.0	8533.0	70.0	9273.0	1373.0	3117.0	2427.0
t	0	0	0	2082.0	2273.0	1539.0	569.0	102.0	63.0	234.0	84.0	9386.0	139.0	6005.0	3369.0	2466.0
MA1648.1_rc_shift4 (TCF12(var.2)_rc) 
; local_words_7nt_m22 versus MA1648.1_rc (TCF12(var.2)_rc); m=11/44; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.754895; ----srGCAGGTGss-
; cor=; Ncor=
a	0	0	0	0	12248.0	16113.0	3412.0	1047.0	53985.0	662.0	1754.0	1733.0	1887.0	10887.0	12473.0	0
c	0	0	0	0	20060.0	14293.0	2314.0	55922.0	2625.0	3536.0	3780.0	5607.0	1186.0	18560.0	16996.0	0
g	0	0	0	0	18154.0	17603.0	55061.0	2088.0	3886.0	55765.0	55598.0	2007.0	57848.0	17594.0	19393.0	0
t	0	0	0	0	11414.0	13867.0	1089.0	2819.0	1380.0	1913.0	744.0	52529.0	955.0	14835.0	13014.0	0
MA0522.3_rc_shift4 (TCF3_rc) 
; local_words_7nt_m22 versus MA0522.3_rc (TCF3_rc); m=12/44; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.749654; ----ssGCAGGTGbs-
; cor=; Ncor=
a	0	0	0	0	6432.0	7233.0	1237.0	492.0	27539.0	283.0	950.0	375.0	705.0	4528.0	6240.0	0
c	0	0	0	0	9222.0	8025.0	987.0	28642.0	1339.0	2652.0	1362.0	1574.0	708.0	9432.0	8539.0	0
g	0	0	0	0	10122.0	8727.0	28742.0	1038.0	2003.0	27199.0	28640.0	396.0	29379.0	9269.0	10212.0	0
t	0	0	0	0	5485.0	7276.0	295.0	1089.0	380.0	1127.0	309.0	28916.0	469.0	8032.0	6270.0	0
MA0500.2_rc_shift4 (MYOG_rc) 
; local_words_7nt_m22 versus MA0500.2_rc (MYOG_rc); m=13/44; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.749509; ----sarCAGCTGyts
; cor=; Ncor=
a	0	0	0	0	5310.0	8475.0	7192.0	88.0	21777.0	95.0	169.0	163.0	182.0	1678.0	4692.0	5070.0
c	0	0	0	0	6369.0	3718.0	2706.0	21985.0	179.0	131.0	21963.0	236.0	101.0	10790.0	5483.0	5596.0
g	0	0	0	0	5660.0	5497.0	10792.0	102.0	238.0	21964.0	130.0	176.0	21988.0	2730.0	3754.0	6381.0
t	0	0	0	0	5018.0	4667.0	1667.0	182.0	163.0	167.0	95.0	21782.0	86.0	7159.0	8428.0	5310.0
MA1619.1_rc_shift4 (Ptf1a(var.2)_rc) 
; local_words_7nt_m22 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=14/44; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.726644; ----rmaCAGCTGtky
; cor=; Ncor=
a	0	0	0	0	1871.0	1974.0	4341.0	49.0	7121.0	33.0	223.0	28.0	27.0	529.0	1216.0	1607.0
c	0	0	0	0	1803.0	2426.0	1065.0	7150.0	40.0	299.0	6689.0	65.0	28.0	1308.0	1629.0	1974.0
g	0	0	0	0	1977.0	1632.0	1312.0	27.0	66.0	6697.0	307.0	41.0	7149.0	1070.0	2430.0	1803.0
t	0	0	0	0	1602.0	1221.0	535.0	27.0	26.0	224.0	34.0	7119.0	49.0	4346.0	1978.0	1869.0
MA1641.1_shift4 (MYF5) 
; local_words_7nt_m22 versus MA1641.1 (MYF5); m=15/44; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.718587; ----gvaCAGCTGtbc
; cor=; Ncor=
a	0	0	0	0	2698.0	3507.0	7490.0	95.0	10965.0	100.0	223.0	129.0	42.0	578.0	1572.0	2554.0
c	0	0	0	0	2700.0	2986.0	1368.0	10911.0	47.0	230.0	10657.0	68.0	161.0	1775.0	3146.0	3258.0
g	0	0	0	0	3258.0	3145.0	1774.0	161.0	69.0	10658.0	230.0	47.0	10912.0	1368.0	2985.0	2701.0
t	0	0	0	0	2554.0	1572.0	578.0	43.0	129.0	222.0	100.0	10966.0	95.0	7489.0	3507.0	2697.0
MA0820.1_rc_shift5 (FIGLA_rc) 
; local_words_7nt_m22 versus MA0820.1_rc (FIGLA_rc); m=16/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.708913; -----wmCAGGTGkw-
; cor=; Ncor=
a	0	0	0	0	0	753.0	832.0	65.0	1780.0	0.0	0.0	14.0	29.0	237.0	449.0	0
c	0	0	0	0	0	289.0	569.0	1780.0	17.0	311.0	527.0	0.0	0.0	160.0	175.0	0
g	0	0	0	0	0	283.0	225.0	33.0	0.0	1780.0	1780.0	46.0	1780.0	693.0	270.0	0
t	0	0	0	0	0	455.0	154.0	36.0	56.0	9.0	0.0	1780.0	0.0	690.0	886.0	0
MA0821.1_shift4 (HES5) 
; local_words_7nt_m22 versus MA0821.1 (HES5); m=17/44; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.706875; ----yGrCACGTGCCr
; cor=; Ncor=
a	0	0	0	0	216.0	47.0	764.0	0.0	1559.0	1.0	1.0	0.0	0.0	0.0	0.0	651.0
c	0	0	0	0	779.0	6.0	63.0	1559.0	0.0	1559.0	0.0	7.0	0.0	1559.0	1559.0	153.0
g	0	0	0	0	30.0	1559.0	1559.0	0.0	1.0	0.0	1559.0	0.0	1559.0	14.0	1.0	475.0
t	0	0	0	0	535.0	1.0	0.0	0.0	0.0	1.0	0.0	1559.0	0.0	267.0	14.0	279.0
MA0147.3_shift4 (MYC) 
; local_words_7nt_m22 versus MA0147.3 (MYC); m=18/44; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.702138; ----ssCCACGTGcys
; cor=; Ncor=
a	0	0	0	0	1038.0	1019.0	438.0	44.0	4600.0	54.0	169.0	59.0	23.0	419.0	961.0	755.0
c	0	0	0	0	1345.0	1287.0	3746.0	4840.0	59.0	4525.0	157.0	162.0	56.0	2801.0	1524.0	1785.0
g	0	0	0	0	1649.0	1757.0	472.0	31.0	170.0	70.0	4578.0	63.0	4817.0	1198.0	1036.0	1348.0
t	0	0	0	0	910.0	879.0	286.0	27.0	113.0	293.0	38.0	4658.0	46.0	524.0	1421.0	1054.0
MA1100.2_shift5 (ASCL1) 
; local_words_7nt_m22 versus MA1100.2 (ASCL1); m=19/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.678987; -----rrCAGCTGcy-
; cor=; Ncor=
a	0	0	0	0	0	1267.0	1334.0	0.0	4413.0	107.0	729.0	118.0	52.0	177.0	843.0	0
c	0	0	0	0	0	926.0	521.0	4413.0	157.0	1288.0	4413.0	24.0	0.0	3065.0	1487.0	0
g	0	0	0	0	0	1495.0	3079.0	0.0	60.0	4413.0	1320.0	121.0	4413.0	814.0	889.0	0
t	0	0	0	0	0	726.0	354.0	14.0	218.0	625.0	20.0	4413.0	29.0	1349.0	1194.0	0
MA1618.1_shift4 (Ptf1a) 
; local_words_7nt_m22 versus MA1618.1 (Ptf1a); m=20/44; ncol2=13; w=12; offset=0; strand=D; shift=4; score=0.656674; ----dmaCAGATGttk
; cor=; Ncor=
a	0	0	0	0	4092.0	4476.0	8554.0	133.0	14064.0	250.0	12132.0	126.0	241.0	965.0	1511.0	3491.0
c	0	0	0	0	2989.0	3662.0	2747.0	14006.0	118.0	466.0	1724.0	224.0	122.0	2058.0	2341.0	3601.0
g	0	0	0	0	3661.0	3568.0	2414.0	130.0	153.0	13072.0	437.0	118.0	13868.0	2854.0	2295.0	3664.0
t	0	0	0	0	3699.0	2735.0	726.0	172.0	106.0	653.0	148.0	13973.0	210.0	8564.0	8294.0	3685.0
MA1493.1_rc_shift5 (HES6_rc) 
; local_words_7nt_m22 versus MA1493.1_rc (HES6_rc); m=21/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.654748; -----rACACGTGCC-
; cor=; Ncor=
a	0	0	0	0	0	209.0	439.0	0.0	439.0	0.0	16.0	11.0	15.0	13.0	43.0	0
c	0	0	0	0	0	0.0	0.0	439.0	29.0	439.0	9.0	9.0	19.0	439.0	439.0	0
g	0	0	0	0	0	152.0	21.0	0.0	7.0	12.0	439.0	0.0	439.0	35.0	39.0	0
t	0	0	0	0	0	79.0	33.0	0.0	0.0	10.0	2.0	439.0	17.0	16.0	12.0	0
MA0626.1_rc_shift5 (Npas2_rc) 
; local_words_7nt_m22 versus MA0626.1_rc (Npas2_rc); m=22/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.635625; -----kaCACGTGsh-
; cor=; Ncor=
a	0	0	0	0	0	202.0	566.0	0.0	999.0	0.0	0.0	0.0	0.0	48.0	257.0	0
c	0	0	0	0	0	202.0	188.0	918.0	0.0	918.0	0.0	0.0	0.0	420.0	293.0	0
g	0	0	0	0	0	299.0	172.0	0.0	0.0	0.0	918.0	0.0	999.0	377.0	177.0	0
t	0	0	0	0	0	297.0	74.0	81.0	0.0	81.0	81.0	999.0	0.0	154.0	273.0	0
MA0816.1_shift5 (Ascl2) 
; local_words_7nt_m22 versus MA0816.1 (Ascl2); m=23/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.624259; -----arCAGCTGyy-
; cor=; Ncor=
a	0	0	0	0	0	237.0	128.0	3.0	300.0	7.0	3.0	4.0	0.0	6.0	34.0	0
c	0	0	0	0	0	36.0	41.0	300.0	0.0	23.0	300.0	0.0	1.0	206.0	101.0	0
g	0	0	0	0	0	63.0	172.0	0.0	0.0	300.0	2.0	0.0	300.0	15.0	28.0	0
t	0	0	0	0	0	16.0	1.0	1.0	15.0	18.0	1.0	300.0	2.0	94.0	199.0	0
MA0048.2_rc_shift5 (NHLH1_rc) 
; local_words_7nt_m22 versus MA0048.2_rc (NHLH1_rc); m=24/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.621893; -----mGCAGCTGCg-
; cor=; Ncor=
a	0	0	0	0	0	1489.0	350.0	1.0	2166.0	0.0	114.0	0.0	0.0	142.0	111.0	0
c	0	0	0	0	0	2166.0	102.0	2166.0	4.0	124.0	2166.0	1.0	0.0	2166.0	181.0	0
g	0	0	0	0	0	736.0	2166.0	4.0	4.0	2166.0	301.0	3.0	2166.0	179.0	2166.0	0
t	0	0	0	0	0	308.0	296.0	2.0	0.0	96.0	0.0	2166.0	3.0	461.0	788.0	0
MA0823.1_shift5 (HEY1) 
; local_words_7nt_m22 versus MA0823.1 (HEY1); m=25/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.618832; -----grCACGTGyc-
; cor=; Ncor=
a	0	0	0	0	0	437.0	1373.0	1.0	3338.0	0.0	0.0	0.0	32.0	333.0	475.0	0
c	0	0	0	0	0	761.0	656.0	3338.0	30.0	3338.0	18.0	474.0	19.0	1762.0	2172.0	0
g	0	0	0	0	0	1788.0	1199.0	3.0	123.0	0.0	3338.0	10.0	3338.0	380.0	373.0	0
t	0	0	0	0	0	352.0	110.0	15.0	21.0	0.0	0.0	3338.0	22.0	863.0	318.0	0
MA1472.1_shift5 (BHLHA15(var.2)) 
; local_words_7nt_m22 versus MA1472.1 (BHLHA15(var.2)); m=26/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.617429; -----avCAGCTGyy-
; cor=; Ncor=
a	0	0	0	0	0	697.0	897.0	47.0	1504.0	11.0	445.0	54.0	0.0	54.0	202.0	0
c	0	0	0	0	0	281.0	607.0	1504.0	33.0	30.0	1504.0	4.0	0.0	610.0	410.0	0
g	0	0	0	0	0	357.0	591.0	6.0	33.0	1504.0	72.0	0.0	1504.0	489.0	316.0	0
t	0	0	0	0	0	170.0	81.0	33.0	137.0	467.0	11.0	1504.0	0.0	1015.0	577.0	0
MA0825.1_shift5 (MNT) 
; local_words_7nt_m22 versus MA0825.1 (MNT); m=27/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.610284; -----avCACGTGcy-
; cor=; Ncor=
a	0	0	0	0	0	279.0	187.0	27.0	681.0	0.0	15.0	0.0	0.0	150.0	159.0	0
c	0	0	0	0	0	128.0	228.0	681.0	0.0	681.0	0.0	0.0	0.0	281.0	229.0	0
g	0	0	0	0	0	145.0	203.0	0.0	0.0	7.0	681.0	15.0	681.0	131.0	75.0	0
t	0	0	0	0	0	129.0	63.0	5.0	21.0	16.0	0.0	681.0	25.0	120.0	219.0	0
MA0649.1_shift5 (HEY2) 
; local_words_7nt_m22 versus MA0649.1 (HEY2); m=28/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.606565; -----GrCACGTGyc-
; cor=; Ncor=
a	0	0	0	0	0	107.0	651.0	84.0	1800.0	7.0	27.0	36.0	0.0	50.0	285.0	0
c	0	0	0	0	0	99.0	305.0	1800.0	0.0	1800.0	72.0	120.0	34.0	1047.0	869.0	0
g	0	0	0	0	0	1800.0	620.0	83.0	128.0	0.0	1800.0	0.0	1800.0	128.0	382.0	0
t	0	0	0	0	0	101.0	224.0	58.0	0.0	0.0	0.0	1800.0	30.0	753.0	264.0	0
MA1635.1_shift5 (BHLHE22(var.2)) 
; local_words_7nt_m22 versus MA1635.1 (BHLHE22(var.2)); m=29/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.606436; -----csCAGCTGsg-
; cor=; Ncor=
a	0	0	0	0	0	3886.0	4453.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4398.0	0
c	0	0	0	0	0	5621.0	5110.0	18331.0	37.0	53.0	18288.0	52.0	15.0	7269.0	4447.0	0
g	0	0	0	0	0	4447.0	7267.0	11.0	52.0	18288.0	53.0	37.0	18327.0	5112.0	5625.0	0
t	0	0	0	0	0	4402.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4449.0	3886.0	0
MA0616.2_rc_shift5 (HES2_rc) 
; local_words_7nt_m22 versus MA0616.2_rc (HES2_rc); m=30/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.606379; -----grCACGTGcC-
; cor=; Ncor=
a	0	0	0	0	0	1319.0	3849.0	0.0	8483.0	0.0	129.0	0.0	73.0	1581.0	798.0	0
c	0	0	0	0	0	1735.0	1289.0	8483.0	0.0	8483.0	0.0	2028.0	85.0	8483.0	8483.0	0
g	0	0	0	0	0	4464.0	4634.0	15.0	1098.0	0.0	8483.0	0.0	8483.0	1107.0	1193.0	0
t	0	0	0	0	0	966.0	512.0	53.0	0.0	0.0	0.0	6455.0	118.0	1501.0	775.0	0
MA0743.2_shift0 (SCRT1) 
; local_words_7nt_m22 versus MA0743.2 (SCRT1); m=31/44; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.605321; wawkCAACAGGTGgtw
; cor=; Ncor=
a	16320.0	22932.0	17036.0	4413.0	1456.0	45606.0	57271.0	213.0	58758.0	7017.0	1664.0	883.0	7813.0	10722.0	13382.0	16484.0
c	14118.0	10314.0	8693.0	7425.0	54835.0	8751.0	370.0	59557.0	234.0	557.0	466.0	1098.0	3296.0	8788.0	14903.0	12837.0
g	14307.0	14514.0	10154.0	16396.0	1297.0	1835.0	1566.0	224.0	159.0	51330.0	56500.0	259.0	41190.0	26973.0	13470.0	11049.0
t	15464.0	12449.0	24326.0	31975.0	2621.0	4017.0	1002.0	215.0	1058.0	1305.0	1579.0	57969.0	7910.0	13726.0	18454.0	19839.0
MA0819.1_shift5 (CLOCK) 
; local_words_7nt_m22 versus MA0819.1 (CLOCK); m=32/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.602063; -----aACACGTGty-
; cor=; Ncor=
a	0	0	0	0	0	226.0	429.0	11.0	429.0	16.0	40.0	3.0	0.0	1.0	89.0	0
c	0	0	0	0	0	35.0	85.0	429.0	5.0	429.0	0.0	5.0	3.0	152.0	128.0	0
g	0	0	0	0	0	93.0	89.0	2.0	15.0	0.0	429.0	5.0	429.0	110.0	39.0	0
t	0	0	0	0	0	75.0	13.0	2.0	0.0	28.0	0.0	429.0	9.0	429.0	174.0	0
MA0058.3_shift5 (MAX) 
; local_words_7nt_m22 versus MA0058.3 (MAX); m=33/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.599408; -----amCACGTGcy-
; cor=; Ncor=
a	0	0	0	0	0	3307.0	1915.0	39.0	6876.0	0.0	329.0	69.0	0.0	1341.0	1122.0	0
c	0	0	0	0	0	1556.0	2809.0	6876.0	0.0	6876.0	39.0	159.0	27.0	2450.0	2225.0	0
g	0	0	0	0	0	1295.0	1514.0	0.0	87.0	7.0	6876.0	20.0	6876.0	1638.0	986.0	0
t	0	0	0	0	0	719.0	637.0	0.0	38.0	229.0	19.0	6876.0	36.0	1446.0	2543.0	0
MA0744.2_shift0 (SCRT2) 
; local_words_7nt_m22 versus MA0744.2 (SCRT2); m=34/44; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.598073; rrwkCAACAGGTggtw
; cor=; Ncor=
a	18855.0	23310.0	29945.0	5353.0	1378.0	53425.0	62366.0	231.0	63880.0	7306.0	1862.0	2078.0	10481.0	13383.0	16058.0	17881.0
c	13345.0	12732.0	6319.0	7236.0	59161.0	5536.0	413.0	64856.0	294.0	728.0	972.0	3475.0	5661.0	11351.0	16085.0	13846.0
g	17680.0	17497.0	12473.0	35769.0	1339.0	2265.0	1878.0	319.0	252.0	56105.0	60636.0	1168.0	38133.0	25288.0	14716.0	12430.0
t	15730.0	12071.0	16873.0	17252.0	3732.0	4384.0	953.0	204.0	1184.0	1471.0	2140.0	58889.0	11335.0	15588.0	18751.0	21453.0
MA1108.2_rc_shift5 (MXI1_rc) 
; local_words_7nt_m22 versus MA1108.2_rc (MXI1_rc); m=35/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.596058; -----gmCATGTGby-
; cor=; Ncor=
a	0	0	0	0	0	5366.0	6658.0	175.0	21541.0	0.0	468.0	7.0	460.0	3945.0	5212.0	0
c	0	0	0	0	0	5394.0	7228.0	21232.0	0.0	1542.0	18.0	170.0	97.0	6078.0	6326.0	0
g	0	0	0	0	0	6343.0	5329.0	114.0	507.0	0.0	21552.0	1.0	21382.0	5841.0	4724.0	0
t	0	0	0	0	0	4945.0	2833.0	527.0	0.0	20506.0	10.0	21870.0	109.0	6184.0	5786.0	0
MA1560.1_shift5 (SOHLH2) 
; local_words_7nt_m22 versus MA1560.1 (SOHLH2); m=36/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.590748; -----ygCACGTGcr-
; cor=; Ncor=
a	0	0	0	0	0	230.0	172.0	45.0	1212.0	0.0	14.0	36.0	41.0	272.0	381.0	0
c	0	0	0	0	0	485.0	264.0	1212.0	0.0	1212.0	0.0	65.0	4.0	1212.0	239.0	0
g	0	0	0	0	0	184.0	1212.0	29.0	41.0	11.0	1212.0	0.0	1212.0	172.0	369.0	0
t	0	0	0	0	0	313.0	276.0	70.0	0.0	7.0	15.0	1212.0	4.0	153.0	224.0	0
MA0100.3_rc_shift5 (MYB_rc) 
; local_words_7nt_m22 versus MA0100.3_rc (MYB_rc); m=37/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.589945; -----kdCAGTTGvk-
; cor=; Ncor=
a	0	0	0	0	0	352.0	497.0	0.0	1398.0	0.0	6.0	7.0	9.0	410.0	380.0	0
c	0	0	0	0	0	225.0	147.0	1516.0	68.0	0.0	0.0	39.0	5.0	397.0	300.0	0
g	0	0	0	0	0	528.0	482.0	3.0	60.0	1527.0	2.0	3.0	1513.0	428.0	422.0	0
t	0	0	0	0	0	422.0	401.0	8.0	1.0	0.0	1519.0	1478.0	0.0	292.0	425.0	0
MA1467.1_shift5 (ATOH1(var.2)) 
; local_words_7nt_m22 versus MA1467.1 (ATOH1(var.2)); m=38/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.588924; -----AACAGCTGTY-
; cor=; Ncor=
a	0	0	0	0	0	1368.0	1008.0	0.0	1368.0	0.0	204.0	0.0	0.0	93.0	0.0	0
c	0	0	0	0	0	171.0	179.0	1368.0	0.0	0.0	1368.0	0.0	0.0	296.0	943.0	0
g	0	0	0	0	0	466.0	182.0	0.0	0.0	1368.0	0.0	0.0	1368.0	35.0	0.0	0
t	0	0	0	0	0	0.0	0.0	0.0	76.0	181.0	0.0	1368.0	0.0	944.0	426.0	0
MA1638.1_shift5 (HAND2) 
; local_words_7nt_m22 versus MA1638.1 (HAND2); m=39/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.584624; -----amCAGATGby-
; cor=; Ncor=
a	0	0	0	0	0	10136.0	8836.0	19.0	29222.0	12.0	30192.0	14.0	234.0	5217.0	6165.0	0
c	0	0	0	0	0	5564.0	11298.0	30062.0	410.0	42.0	30.0	2276.0	149.0	7690.0	10227.0	0
g	0	0	0	0	0	7463.0	6994.0	132.0	647.0	30144.0	38.0	31.0	29851.0	8878.0	6108.0	0
t	0	0	0	0	0	7120.0	3155.0	70.0	4.0	85.0	23.0	27962.0	49.0	8498.0	7783.0	0
MA0622.1_rc_shift6 (Mlxip_rc) 
; local_words_7nt_m22 versus MA0622.1_rc (Mlxip_rc); m=40/44; ncol2=8; w=8; offset=2; strand=R; shift=6; score=0.505355; ------mCACGTGv--
; cor=; Ncor=
a	0	0	0	0	0	0	499.0	0.0	999.0	0.0	0.0	0.0	0.0	263.0	0	0
c	0	0	0	0	0	0	250.0	999.0	0.0	999.0	0.0	0.0	0.0	421.0	0	0
g	0	0	0	0	0	0	63.0	0.0	0.0	0.0	999.0	0.0	999.0	263.0	0	0
t	0	0	0	0	0	0	188.0	0.0	0.0	0.0	0.0	999.0	0.0	53.0	0	0
MA0807.1_shift8 (TBX5) 
; local_words_7nt_m22 versus MA0807.1 (TBX5); m=41/44; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.499723; --------AGGTGTkA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	1804.0	235.0	0.0	45.0	27.0	162.0	126.0	1804.0
c	0	0	0	0	0	0	0	0	89.0	190.0	0.0	131.0	0.0	225.0	616.0	76.0
g	0	0	0	0	0	0	0	0	409.0	1804.0	1804.0	166.0	1804.0	201.0	1804.0	343.0
t	0	0	0	0	0	0	0	0	207.0	133.0	28.0	1804.0	0.0	1804.0	915.0	283.0
MA0806.1_shift8 (TBX4) 
; local_words_7nt_m22 versus MA0806.1 (TBX4); m=42/44; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.495749; --------AGGTGTgA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	18646.0	3082.0	38.0	0.0	0.0	1551.0	1355.0	18646.0
c	0	0	0	0	0	0	0	0	437.0	2328.0	189.0	1644.0	0.0	2859.0	5396.0	588.0
g	0	0	0	0	0	0	0	0	2353.0	18646.0	18646.0	191.0	18646.0	304.0	18646.0	1733.0
t	0	0	0	0	0	0	0	0	1283.0	1162.0	33.0	18646.0	0.0	18646.0	8384.0	965.0
MA0774.1_shift3 (MEIS2) 
; local_words_7nt_m22 versus MA0774.1 (MEIS2); m=43/44; ncol2=8; w=7; offset=-1; strand=D; shift=3; score=0.415703; ---tTGACAGs-----
; cor=; Ncor=
a	0	0	0	408.0	31.0	0.0	1351.0	9.0	1351.0	83.0	157.0	0	0	0	0	0
c	0	0	0	264.0	3.0	0.0	3.0	1351.0	7.0	98.0	701.0	0	0	0	0	0
g	0	0	0	314.0	40.0	1351.0	25.0	0.0	4.0	1351.0	650.0	0	0	0	0	0
t	0	0	0	1351.0	1351.0	0.0	62.0	5.0	0.0	67.0	88.0	0	0	0	0	0
MA0802.1_shift8 (TBR1) 
; local_words_7nt_m22 versus MA0802.1 (TBR1); m=44/44; ncol2=10; w=8; offset=4; strand=D; shift=8; score=0.400182; --------AGGTGTGA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	34509.0	6880.0	70.0	39.0	0.0	2386.0	1175.0	34509.0
c	0	0	0	0	0	0	0	0	359.0	3255.0	254.0	1759.0	6.0	4742.0	2551.0	90.0
g	0	0	0	0	0	0	0	0	3329.0	34509.0	34509.0	88.0	34509.0	157.0	34509.0	584.0
t	0	0	0	0	0	0	0	0	1433.0	4480.0	213.0	34509.0	4.0	34509.0	7001.0	205.0