One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m10/peak-motifs_local_words_8nt_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m10/peak-motifs_local_words_8nt_m10_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_8nt_m10_shift0 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m10_shift0 (local_words_8nt_m10local_words_8nt_m10)
; local_words_8nt_m10 (local_words_8nt_m10local_words_8nt_m10); m=0 (reference); ncol1=16; shift=0; ncol=16; skGcCAGCTGCTGCyg ; Alignment reference a 70 55 19 44 1 283 7 2 20 0 1 5 7 3 46 54 c 96 62 32 193 286 3 5 279 2 2 283 2 21 247 95 65 g 76 78 218 41 1 2 277 7 2 287 1 4 248 13 59 103 t 47 94 20 11 1 1 0 1 265 0 4 278 13 26 89 67

MA1485.1_rc_shift0 (FERD3L_rc)
; local_words_8nt_m10 versus MA1485.1_rc (FERD3L_rc); m=1/16; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.637194; GTrACAGCTGkyrC-- ; cor=; Ncor= a 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_shift1 (MYOG)
; local_words_8nt_m10 versus MA0500.2 (MYOG); m=2/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.618863; -sarCAGCTGyts--- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0499.2_rc_shift0 (MYOD1_rc)
; local_words_8nt_m10 versus MA0499.2_rc (MYOD1_rc); m=3/16; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.586858; rkrACAGGTGcwg--- ; cor=; Ncor= a 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; local_words_8nt_m10 versus MA0521.1_rc (Tcf12_rc); m=4/16; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.56185; -cwsCAGCTGYy---- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1619.1_shift1 (Ptf1a(var.2))
; local_words_8nt_m10 versus MA1619.1 (Ptf1a(var.2)); m=5/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.554299; -rmaCAGCTGtky--- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_shift1 (MYF5)
; local_words_8nt_m10 versus MA1641.1 (MYF5); m=6/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.551193; -gvaCAGCTGtbc--- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0816.1_rc_shift2 (Ascl2_rc)
; local_words_8nt_m10 versus MA0816.1_rc (Ascl2_rc); m=7/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.535442; --rrCAGCTGyt---- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; local_words_8nt_m10 versus MA1100.2_rc (ASCL1_rc); m=8/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.526979; --rgCAGCTGyy---- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift2 (BHLHE22(var.2))
; local_words_8nt_m10 versus MA1635.1 (BHLHE22(var.2)); m=9/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.52362; --csCAGCTGsg---- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; local_words_8nt_m10 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=10/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.517184; --rrCAGCTGbt---- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1467.1_rc_shift2 (ATOH1(var.2)_rc)
; local_words_8nt_m10 versus MA1467.1_rc (ATOH1(var.2)_rc); m=11/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.503135; --RACAGCTGTT---- ; cor=; Ncor= a 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0048.2_shift2 (NHLH1)
; local_words_8nt_m10 versus MA0048.2 (NHLH1); m=12/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.497253; --cGCAGCTGCk---- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1648.1_shift2 (TCF12(var.2))
; local_words_8nt_m10 versus MA1648.1 (TCF12(var.2)); m=13/16; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.494192; --ssCACCTGCys--- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift2 (TCF3)
; local_words_8nt_m10 versus MA0522.3 (TCF3); m=14/16; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.486537; --svCACCTGCss--- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0691.1_rc_shift2 (TFAP4_rc)
; local_words_8nt_m10 versus MA0691.1_rc (TFAP4_rc); m=15/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.474091; --AwCAGCTGwT---- ; cor=; Ncor= a 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0665.1_shift2 (MSC)
; local_words_8nt_m10 versus MA0665.1 (MSC); m=16/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.46746; --AACAGCTGTT---- ; cor=; Ncor= a 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_8nt_m10_shift0 (local_words_8nt_m10local_words_8nt_m10)				; local_words_8nt_m10 (local_words_8nt_m10local_words_8nt_m10); m=0 (reference); ncol1=16; shift=0; ncol=16; skGcCAGCTGCTGCyg ; Alignment reference a 70 55 19 44 1 283 7 2 20 0 1 5 7 3 46 54 c 96 62 32 193 286 3 5 279 2 2 283 2 21 247 95 65 g 76 78 218 41 1 2 277 7 2 287 1 4 248 13 59 103 t 47 94 20 11 1 1 0 1 265 0 4 278 13 26 89 67
MA1485.1_rc_shift0 (FERD3L_rc)				; local_words_8nt_m10 versus MA1485.1_rc (FERD3L_rc); m=1/16; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.637194; GTrACAGCTGkyrC-- ; cor=; Ncor= a 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0
MA0500.2_shift1 (MYOG)				; local_words_8nt_m10 versus MA0500.2 (MYOG); m=2/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.618863; -sarCAGCTGyts--- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0
MA0499.2_rc_shift0 (MYOD1_rc)				; local_words_8nt_m10 versus MA0499.2_rc (MYOD1_rc); m=3/16; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.586858; rkrACAGGTGcwg--- ; cor=; Ncor= a 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; local_words_8nt_m10 versus MA0521.1_rc (Tcf12_rc); m=4/16; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.56185; -cwsCAGCTGYy---- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0
MA1619.1_shift1 (Ptf1a(var.2))				; local_words_8nt_m10 versus MA1619.1 (Ptf1a(var.2)); m=5/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.554299; -rmaCAGCTGtky--- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0
MA1641.1_shift1 (MYF5)				; local_words_8nt_m10 versus MA1641.1 (MYF5); m=6/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.551193; -gvaCAGCTGtbc--- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0
MA0816.1_rc_shift2 (Ascl2_rc)				; local_words_8nt_m10 versus MA0816.1_rc (Ascl2_rc); m=7/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.535442; --rrCAGCTGyt---- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0
MA1100.2_rc_shift2 (ASCL1_rc)				; local_words_8nt_m10 versus MA1100.2_rc (ASCL1_rc); m=8/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.526979; --rgCAGCTGyy---- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0
MA1635.1_shift2 (BHLHE22(var.2))				; local_words_8nt_m10 versus MA1635.1 (BHLHE22(var.2)); m=9/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.52362; --csCAGCTGsg---- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0
MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)				; local_words_8nt_m10 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=10/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.517184; --rrCAGCTGbt---- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0
MA1467.1_rc_shift2 (ATOH1(var.2)_rc)				; local_words_8nt_m10 versus MA1467.1_rc (ATOH1(var.2)_rc); m=11/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.503135; --RACAGCTGTT---- ; cor=; Ncor= a 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0
MA0048.2_shift2 (NHLH1)				; local_words_8nt_m10 versus MA0048.2 (NHLH1); m=12/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.497253; --cGCAGCTGCk---- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0
MA1648.1_shift2 (TCF12(var.2))				; local_words_8nt_m10 versus MA1648.1 (TCF12(var.2)); m=13/16; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.494192; --ssCACCTGCys--- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0
MA0522.3_shift2 (TCF3)				; local_words_8nt_m10 versus MA0522.3 (TCF3); m=14/16; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.486537; --svCACCTGCss--- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0
MA0691.1_rc_shift2 (TFAP4_rc)				; local_words_8nt_m10 versus MA0691.1_rc (TFAP4_rc); m=15/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.474091; --AwCAGCTGwT---- ; cor=; Ncor= a 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0
MA0665.1_shift2 (MSC)				; local_words_8nt_m10 versus MA0665.1 (MSC); m=16/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.46746; --AACAGCTGTT---- ; cor=; Ncor= a 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0