One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m11/peak-motifs_local_words_8nt_m11.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m11/peak-motifs_local_words_8nt_m11_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_8nt_m11_shift0 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m11_shift0 (local_words_8nt_m11local_words_8nt_m11)
; local_words_8nt_m11 (local_words_8nt_m11local_words_8nt_m11); m=0 (reference); ncol1=16; shift=0; ncol=16; crGCAGCAGCTGgCms ; Alignment reference a 67 89 26 13 279 4 0 266 1 0 1 1 11 20 94 47 c 103 60 13 248 4 1 288 2 7 278 2 1 41 218 78 76 g 66 95 248 22 2 284 2 2 280 5 3 287 194 33 63 97 t 54 46 3 7 5 1 0 20 2 7 284 1 44 19 55 70

MA1485.1_shift2 (FERD3L)
; local_words_8nt_m11 versus MA1485.1 (FERD3L); m=1/16; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.637057; --GyrmCAGCTGTyAC ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_8nt_m11 versus MA0500.2_rc (MYOG_rc); m=2/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.619143; ---sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0499.2_shift3 (MYOD1)
; local_words_8nt_m11 versus MA0499.2 (MYOD1); m=3/16; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.586827; ---cwgCACCTGTymy ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0

MA0521.1_shift4 (Tcf12)
; local_words_8nt_m11 versus MA0521.1 (Tcf12); m=4/16; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.562042; ----rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_8nt_m11 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.554637; ---rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_8nt_m11 versus MA1641.1_rc (MYF5_rc); m=6/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.551479; ---gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA0816.1_shift4 (Ascl2)
; local_words_8nt_m11 versus MA0816.1 (Ascl2); m=7/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.535423; ----arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_8nt_m11 versus MA1100.2 (ASCL1); m=8/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.526992; ----rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_8nt_m11 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=9/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.523743; ----csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_8nt_m11 versus MA1472.1 (BHLHA15(var.2)); m=10/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.517238; ----avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_8nt_m11 versus MA1467.1 (ATOH1(var.2)); m=11/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.502971; ----AACAGCTGTY-- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_8nt_m11 versus MA0048.2_rc (NHLH1_rc); m=12/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.497513; ----mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_8nt_m11 versus MA1648.1_rc (TCF12(var.2)_rc); m=13/16; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.494461; ---srGCAGGTGss-- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; local_words_8nt_m11 versus MA0522.3_rc (TCF3_rc); m=14/16; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.486832; ---ssGCAGGTGbs-- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_8nt_m11 versus MA0691.1 (TFAP4); m=15/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.474137; ----AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_8nt_m11 versus MA0665.1_rc (MSC_rc); m=16/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.467449; ----AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_8nt_m11_shift0 (local_words_8nt_m11local_words_8nt_m11)				; local_words_8nt_m11 (local_words_8nt_m11local_words_8nt_m11); m=0 (reference); ncol1=16; shift=0; ncol=16; crGCAGCAGCTGgCms ; Alignment reference a 67 89 26 13 279 4 0 266 1 0 1 1 11 20 94 47 c 103 60 13 248 4 1 288 2 7 278 2 1 41 218 78 76 g 66 95 248 22 2 284 2 2 280 5 3 287 194 33 63 97 t 54 46 3 7 5 1 0 20 2 7 284 1 44 19 55 70
MA1485.1_shift2 (FERD3L)				; local_words_8nt_m11 versus MA1485.1 (FERD3L); m=1/16; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.637057; --GyrmCAGCTGTyAC ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0
MA0500.2_rc_shift3 (MYOG_rc)				; local_words_8nt_m11 versus MA0500.2_rc (MYOG_rc); m=2/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.619143; ---sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA0499.2_shift3 (MYOD1)				; local_words_8nt_m11 versus MA0499.2 (MYOD1); m=3/16; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.586827; ---cwgCACCTGTymy ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0
MA0521.1_shift4 (Tcf12)				; local_words_8nt_m11 versus MA0521.1 (Tcf12); m=4/16; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.562042; ----rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)				; local_words_8nt_m11 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.554637; ---rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0
MA1641.1_rc_shift3 (MYF5_rc)				; local_words_8nt_m11 versus MA1641.1_rc (MYF5_rc); m=6/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.551479; ---gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0
MA0816.1_shift4 (Ascl2)				; local_words_8nt_m11 versus MA0816.1 (Ascl2); m=7/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.535423; ----arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA1100.2_shift4 (ASCL1)				; local_words_8nt_m11 versus MA1100.2 (ASCL1); m=8/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.526992; ----rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0
MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)				; local_words_8nt_m11 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=9/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.523743; ----csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0
MA1472.1_shift4 (BHLHA15(var.2))				; local_words_8nt_m11 versus MA1472.1 (BHLHA15(var.2)); m=10/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.517238; ----avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0
MA1467.1_shift4 (ATOH1(var.2))				; local_words_8nt_m11 versus MA1467.1 (ATOH1(var.2)); m=11/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.502971; ----AACAGCTGTY-- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0
MA0048.2_rc_shift4 (NHLH1_rc)				; local_words_8nt_m11 versus MA0048.2_rc (NHLH1_rc); m=12/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.497513; ----mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0
MA1648.1_rc_shift3 (TCF12(var.2)_rc)				; local_words_8nt_m11 versus MA1648.1_rc (TCF12(var.2)_rc); m=13/16; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.494461; ---srGCAGGTGss-- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0
MA0522.3_rc_shift3 (TCF3_rc)				; local_words_8nt_m11 versus MA0522.3_rc (TCF3_rc); m=14/16; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.486832; ---ssGCAGGTGbs-- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0
MA0691.1_shift4 (TFAP4)				; local_words_8nt_m11 versus MA0691.1 (TFAP4); m=15/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.474137; ----AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA0665.1_rc_shift4 (MSC_rc)				; local_words_8nt_m11 versus MA0665.1_rc (MSC_rc); m=16/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.467449; ----AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0