Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m21/peak-motifs_local_words_8nt_m21_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m21/peak-motifs_local_words_8nt_m21.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m21/peak-motifs_local_words_8nt_m21_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m21/peak-motifs_local_words_8nt_m21.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m21/peak-motifs_local_words_8nt_m21_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m21/peak-motifs_local_words_8nt_m21_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m21/peak-motifs_local_words_8nt_m21_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m21/peak-motifs_local_words_8nt_m21_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m21/peak-motifs_local_words_8nt_m21_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m21/peak-motifs_local_words_8nt_m21_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/local_words_8nt_m21/peak-motifs_local_words_8nt_m21.tf
		file1	1	12	366
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
local_words_8nt_m21 MA1648.1 local_words_8nt_m21local_words_8nt_m21 TCF12(var.2) 0.934 0.856 12 11 11 12 0.9167 0.9167 1.0000 R 1
local_words_8nt_m21 MA0522.3 local_words_8nt_m21local_words_8nt_m21 TCF3 0.928 0.851 12 11 11 12 0.9167 0.9167 1.0000 R 1
local_words_8nt_m21 MA1631.1 local_words_8nt_m21local_words_8nt_m21 ASCL1(var.2) 0.915 0.845 12 13 12 13 0.9231 1.0000 0.9231 R 0
local_words_8nt_m21 MA0830.2 local_words_8nt_m21local_words_8nt_m21 TCF4 0.896 0.827 12 13 12 13 0.9231 1.0000 0.9231 R 0
local_words_8nt_m21 MA0103.3 local_words_8nt_m21local_words_8nt_m21 ZEB1 0.879 0.806 12 11 11 12 0.9167 0.9167 1.0000 R 1
local_words_8nt_m21 MA1558.1 local_words_8nt_m21local_words_8nt_m21 SNAI1 0.906 0.755 12 10 10 12 0.8333 0.8333 1.0000 D 2
local_words_8nt_m21 MA1559.1 local_words_8nt_m21local_words_8nt_m21 SNAI3 0.879 0.733 12 10 10 12 0.8333 0.8333 1.0000 D 2
local_words_8nt_m21 MA0745.2 local_words_8nt_m21local_words_8nt_m21 SNAI2 0.789 0.728 12 13 12 13 0.9231 1.0000 0.9231 R 0
local_words_8nt_m21 MA0499.2 local_words_8nt_m21local_words_8nt_m21 MYOD1 0.756 0.698 12 13 12 13 0.9231 1.0000 0.9231 R 0
local_words_8nt_m21 MA0820.1 local_words_8nt_m21local_words_8nt_m21 FIGLA 0.833 0.694 12 10 10 12 0.8333 0.8333 1.0000 R 2
local_words_8nt_m21 MA1621.1 local_words_8nt_m21local_words_8nt_m21 Rbpjl 0.806 0.691 12 14 12 14 0.8571 1.0000 0.8571 R 0
local_words_8nt_m21 MA1620.1 local_words_8nt_m21local_words_8nt_m21 Ptf1a(var.3) 0.802 0.679 12 12 11 13 0.8462 0.9167 0.9167 R 1
local_words_8nt_m21 MA1100.2 local_words_8nt_m21local_words_8nt_m21 ASCL1 0.788 0.657 12 10 10 12 0.8333 0.8333 1.0000 D 2
local_words_8nt_m21 MA0059.1 local_words_8nt_m21local_words_8nt_m21 MAX::MYC 0.712 0.652 12 11 11 12 0.9167 0.9167 1.0000 D 1
local_words_8nt_m21 MA0816.1 local_words_8nt_m21local_words_8nt_m21 Ascl2 0.778 0.648 12 10 10 12 0.8333 0.8333 1.0000 R 2
local_words_8nt_m21 MA1628.1 local_words_8nt_m21local_words_8nt_m21 Zic1::Zic2 0.820 0.631 12 11 10 13 0.7692 0.8333 0.9091 D -1
local_words_8nt_m21 MA0048.2 local_words_8nt_m21local_words_8nt_m21 NHLH1 0.751 0.626 12 10 10 12 0.8333 0.8333 1.0000 R 2
local_words_8nt_m21 MA0500.2 local_words_8nt_m21local_words_8nt_m21 MYOG 0.728 0.616 12 12 11 13 0.8462 0.9167 0.9167 R 1
local_words_8nt_m21 MA0147.3 local_words_8nt_m21local_words_8nt_m21 MYC 0.718 0.607 12 12 11 13 0.8462 0.9167 0.9167 R 1
local_words_8nt_m21 MA1472.1 local_words_8nt_m21local_words_8nt_m21 BHLHA15(var.2) 0.721 0.600 12 10 10 12 0.8333 0.8333 1.0000 D 2
local_words_8nt_m21 MA0058.3 local_words_8nt_m21local_words_8nt_m21 MAX 0.718 0.599 12 10 10 12 0.8333 0.8333 1.0000 R 2
local_words_8nt_m21 MA0825.1 local_words_8nt_m21local_words_8nt_m21 MNT 0.716 0.597 12 10 10 12 0.8333 0.8333 1.0000 R 2
local_words_8nt_m21 MA1585.1 local_words_8nt_m21local_words_8nt_m21 ZKSCAN1 0.715 0.596 12 10 10 12 0.8333 0.8333 1.0000 D 0
local_words_8nt_m21 MA1560.1 local_words_8nt_m21local_words_8nt_m21 SOHLH2 0.709 0.591 12 10 10 12 0.8333 0.8333 1.0000 R 2
local_words_8nt_m21 MA1629.1 local_words_8nt_m21local_words_8nt_m21 Zic2 0.803 0.589 12 14 11 15 0.7333 0.9167 0.7857 D -3
local_words_8nt_m21 MA0626.1 local_words_8nt_m21local_words_8nt_m21 Npas2 0.703 0.586 12 10 10 12 0.8333 0.8333 1.0000 D 2
local_words_8nt_m21 MA0744.2 local_words_8nt_m21local_words_8nt_m21 SCRT2 0.763 0.572 12 16 12 16 0.7500 1.0000 0.7500 D -3
local_words_8nt_m21 MA0521.1 local_words_8nt_m21local_words_8nt_m21 Tcf12 0.744 0.572 12 11 10 13 0.7692 0.8333 0.9091 D 2
local_words_8nt_m21 MA0743.2 local_words_8nt_m21local_words_8nt_m21 SCRT1 0.756 0.567 12 16 12 16 0.7500 1.0000 0.7500 D -3
local_words_8nt_m21 MA0622.1 local_words_8nt_m21local_words_8nt_m21 Mlxip 0.746 0.497 12 8 8 12 0.6667 0.6667 1.0000 D 3
local_words_8nt_m21 MA0807.1 local_words_8nt_m21local_words_8nt_m21 TBX5 0.902 0.486 12 8 7 13 0.5385 0.5833 0.8750 D 5
local_words_8nt_m21 MA0806.1 local_words_8nt_m21local_words_8nt_m21 TBX4 0.901 0.485 12 8 7 13 0.5385 0.5833 0.8750 D 5
local_words_8nt_m21 MA0803.1 local_words_8nt_m21local_words_8nt_m21 TBX15 0.861 0.464 12 8 7 13 0.5385 0.5833 0.8750 D 5
local_words_8nt_m21 MA0805.1 local_words_8nt_m21local_words_8nt_m21 TBX1 0.848 0.457 12 8 7 13 0.5385 0.5833 0.8750 D 5
local_words_8nt_m21 MA0801.1 local_words_8nt_m21local_words_8nt_m21 MGA 0.841 0.453 12 8 7 13 0.5385 0.5833 0.8750 D 5
local_words_8nt_m21 MA1567.1 local_words_8nt_m21local_words_8nt_m21 TBX6 0.784 0.448 12 10 8 14 0.5714 0.6667 0.8000 D 4
local_words_8nt_m21 MA1565.1 local_words_8nt_m21local_words_8nt_m21 TBX18 0.741 0.445 12 12 9 15 0.6000 0.7500 0.7500 D 3
local_words_8nt_m21 MA1566.1 local_words_8nt_m21local_words_8nt_m21 TBX3 0.748 0.427 12 10 8 14 0.5714 0.6667 0.8000 D 4
local_words_8nt_m21 MA0690.1 local_words_8nt_m21local_words_8nt_m21 TBX21 0.722 0.413 12 10 8 14 0.5714 0.6667 0.8000 D 4
local_words_8nt_m21 MA0688.1 local_words_8nt_m21local_words_8nt_m21 TBX2 0.772 0.412 12 11 8 15 0.5333 0.6667 0.7273 D 4
local_words_8nt_m21 MA0802.1 local_words_8nt_m21local_words_8nt_m21 TBR1 0.869 0.406 12 10 7 15 0.4667 0.5833 0.7000 D 5 
 Host name	pedagogix
 Job started	2020-04-13.235240
 Job done	2020-04-13.235327
 Seconds	6.18
	user	6.18
	system	0.79
	cuser	37.59
;	csystem	1.96