Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m14/peak-motifs_oligos_6nt_mkv3_m14_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m14/peak-motifs_oligos_6nt_mkv3_m14.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m14/peak-motifs_oligos_6nt_mkv3_m14_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m14/peak-motifs_oligos_6nt_mkv3_m14.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m14/peak-motifs_oligos_6nt_mkv3_m14_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m14/peak-motifs_oligos_6nt_mkv3_m14_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m14/peak-motifs_oligos_6nt_mkv3_m14_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m14/peak-motifs_oligos_6nt_mkv3_m14_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m14/peak-motifs_oligos_6nt_mkv3_m14_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m14/peak-motifs_oligos_6nt_mkv3_m14_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m14/peak-motifs_oligos_6nt_mkv3_m14.tf
		file1	1	16	1139
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m14 MA0832.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 Tcf21 0.886 0.775 16 14 14 16 0.8750 0.8750 1.0000 R 1
oligos_6nt_mkv3_m14 MA1641.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 MYF5 0.965 0.724 16 12 12 16 0.7500 0.7500 1.0000 R 2
oligos_6nt_mkv3_m14 MA1619.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 Ptf1a(var.2) 0.951 0.713 16 12 12 16 0.7500 0.7500 1.0000 D 2
oligos_6nt_mkv3_m14 MA1621.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 Rbpjl 0.804 0.703 16 14 14 16 0.8750 0.8750 1.0000 D 1
oligos_6nt_mkv3_m14 MA1485.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 FERD3L 0.800 0.700 16 14 14 16 0.8750 0.8750 1.0000 D 1
oligos_6nt_mkv3_m14 MA0500.2 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 MYOG 0.893 0.670 16 12 12 16 0.7500 0.7500 1.0000 R 2
oligos_6nt_mkv3_m14 MA1618.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 Ptf1a 0.813 0.661 16 13 13 16 0.8125 0.8125 1.0000 R 1
oligos_6nt_mkv3_m14 MA0499.2 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 MYOD1 0.802 0.651 16 13 13 16 0.8125 0.8125 1.0000 D 2
oligos_6nt_mkv3_m14 MA0521.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 Tcf12 0.899 0.618 16 11 11 16 0.6875 0.6875 1.0000 R 2
oligos_6nt_mkv3_m14 MA1467.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 ATOH1(var.2) 0.982 0.614 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_6nt_mkv3_m14 MA1620.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 Ptf1a(var.3) 0.817 0.613 16 12 12 16 0.7500 0.7500 1.0000 R 2
oligos_6nt_mkv3_m14 MA0745.2 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 SNAI2 0.724 0.588 16 13 13 16 0.8125 0.8125 1.0000 D 2
oligos_6nt_mkv3_m14 MA1472.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 BHLHA15(var.2) 0.934 0.584 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_6nt_mkv3_m14 MA0665.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 MSC 0.933 0.583 16 10 10 16 0.6250 0.6250 1.0000 R 3
oligos_6nt_mkv3_m14 MA0796.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 TGIF1 0.774 0.581 16 12 12 16 0.7500 0.7500 1.0000 R 2
oligos_6nt_mkv3_m14 MA0698.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 ZBTB18 0.713 0.579 16 13 13 16 0.8125 0.8125 1.0000 R 2
oligos_6nt_mkv3_m14 MA1571.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 TGIF2LX 0.768 0.576 16 12 12 16 0.7500 0.7500 1.0000 R 2
oligos_6nt_mkv3_m14 MA1123.2 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 TWIST1 0.704 0.572 16 13 13 16 0.8125 0.8125 1.0000 D 1
oligos_6nt_mkv3_m14 MA0667.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 MYF6 0.907 0.567 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_6nt_mkv3_m14 MA0797.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 TGIF2 0.753 0.565 16 12 12 16 0.7500 0.7500 1.0000 R 2
oligos_6nt_mkv3_m14 MA1572.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 TGIF2LY 0.751 0.563 16 12 12 16 0.7500 0.7500 1.0000 R 2
oligos_6nt_mkv3_m14 MA0691.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 TFAP4 0.896 0.560 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_6nt_mkv3_m14 MA0091.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 TAL1::TCF3 0.745 0.559 16 12 12 16 0.7500 0.7500 1.0000 D 1
oligos_6nt_mkv3_m14 MA0816.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 Ascl2 0.887 0.555 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_6nt_mkv3_m14 MA1635.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 BHLHE22(var.2) 0.884 0.553 16 10 10 16 0.6250 0.6250 1.0000 R 3
oligos_6nt_mkv3_m14 MA1655.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 ZNF341 0.723 0.543 16 12 12 16 0.7500 0.7500 1.0000 D 0
oligos_6nt_mkv3_m14 MA0783.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 PKNOX2 0.714 0.536 16 12 12 16 0.7500 0.7500 1.0000 R 2
oligos_6nt_mkv3_m14 MA1100.2 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 ASCL1 0.856 0.535 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_6nt_mkv3_m14 MA0820.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 FIGLA 0.797 0.498 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_6nt_mkv3_m14 MA0048.2 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 NHLH1 0.782 0.489 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_6nt_mkv3_m14 MA1638.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 HAND2 0.716 0.448 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_6nt_mkv3_m14 MA1570.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 TFAP4(var.2) 0.708 0.443 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_6nt_mkv3_m14 MA1559.1 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 SNAI3 0.704 0.440 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_6nt_mkv3_m14 MA0100.3 oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14 MYB 0.701 0.438 16 10 10 16 0.6250 0.6250 1.0000 D 3 
 Host name	pedagogix
 Job started	2020-04-13.224221
 Job done	2020-04-13.224249
 Seconds	3.71
	user	3.71
	system	0.5
	cuser	22.06
;	csystem	1.56