One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m15/peak-motifs_oligos_6nt_mkv3_m15.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m15/peak-motifs_oligos_6nt_mkv3_m15_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m15_shift3 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m15_shift3 (oligos_6nt_mkv3_m15oligos_6nt_mkv3_m15)
; oligos_6nt_mkv3_m15 (oligos_6nt_mkv3_m15oligos_6nt_mkv3_m15); m=0 (reference); ncol1=11; shift=3; ncol=14; ---crGAAGCAAcy ; Alignment reference a 0 0 0 28 33 1 114 114 6 3 106 113 25 23 c 0 0 0 53 16 0 0 0 1 101 3 2 46 34 g 0 0 0 23 43 108 0 1 106 6 4 0 25 26 t 0 0 0 11 23 6 1 0 2 5 2 0 19 32

MA1646.1_shift0 (OSR2)
; oligos_6nt_mkv3_m15 versus MA1646.1 (OSR2); m=1/5; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.483951; amaCAGAAGChr-- ; cor=; Ncor= a 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 0 c 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 0 g 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 0 t 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0 0

MA0764.2_shift1 (ETV4)
; oligos_6nt_mkv3_m15 versus MA0764.2 (ETV4); m=2/5; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.436794; -rcAGGAAGyr--- ; cor=; Ncor= a 0 3119.0 1206.0 8353.0 0.0 1.0 8374.0 8333.0 11.0 1296.0 2336.0 0 0 0 c 0 1494.0 4608.0 61.0 92.0 1.0 0.0 73.0 28.0 2194.0 1597.0 0 0 0 g 0 2721.0 1936.0 0.0 8308.0 8345.0 0.0 0.0 8344.0 1949.0 3055.0 0 0 0 t 0 1080.0 664.0 0.0 14.0 67.0 40.0 8.0 31.0 2975.0 1426.0 0 0 0

MA0645.1_shift1 (ETV6)
; oligos_6nt_mkv3_m15 versus MA0645.1 (ETV6); m=3/5; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.433041; -msCGGAAGTr--- ; cor=; Ncor= a 0 9414.0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 0 0 c 0 6562.0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 0 0 g 0 4684.0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 0 0 t 0 2002.0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0 0 0

MA0136.2_shift0 (ELF5)
; oligos_6nt_mkv3_m15 versus MA0136.2 (ELF5); m=4/5; ncol2=11; w=8; offset=-3; strand=D; shift=0; score=0.422883; acsmGGAAGtr--- ; cor=; Ncor= a 2416.0 1221.0 987.0 1458.0 3.0 5.0 2699.0 2646.0 890.0 477.0 959.0 0 0 0 c 252.0 2298.0 2453.0 2528.0 0.0 0.0 11.0 61.0 155.0 716.0 371.0 0 0 0 g 301.0 955.0 1266.0 309.0 3307.0 3315.0 1.0 0.0 2857.0 312.0 762.0 0 0 0 t 793.0 866.0 97.0 56.0 20.0 25.0 4.0 245.0 84.0 2470.0 663.0 0 0 0

MA1484.1_shift0 (ETS2)
; oligos_6nt_mkv3_m15 versus MA1484.1 (ETS2); m=5/5; ncol2=10; w=7; offset=-3; strand=D; shift=0; score=0.403982; rACCGGAWGy---- ; cor=; Ncor= a 5261.0 16738.0 643.0 1279.0 7.0 4.0 16738.0 11582.0 3050.0 0.0 0 0 0 0 c 2830.0 471.0 16738.0 16738.0 0.0 7.0 13.0 204.0 0.0 8136.0 0 0 0 0 g 5702.0 3136.0 1306.0 0.0 16738.0 16738.0 7.0 0.0 13730.0 415.0 0 0 0 0 t 2945.0 727.0 0.0 0.0 5.0 0.0 0.0 4953.0 0.0 8190.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m15_shift3 (oligos_6nt_mkv3_m15oligos_6nt_mkv3_m15)				; oligos_6nt_mkv3_m15 (oligos_6nt_mkv3_m15oligos_6nt_mkv3_m15); m=0 (reference); ncol1=11; shift=3; ncol=14; ---crGAAGCAAcy ; Alignment reference a 0 0 0 28 33 1 114 114 6 3 106 113 25 23 c 0 0 0 53 16 0 0 0 1 101 3 2 46 34 g 0 0 0 23 43 108 0 1 106 6 4 0 25 26 t 0 0 0 11 23 6 1 0 2 5 2 0 19 32
MA1646.1_shift0 (OSR2)				; oligos_6nt_mkv3_m15 versus MA1646.1 (OSR2); m=1/5; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.483951; amaCAGAAGChr-- ; cor=; Ncor= a 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 0 c 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 0 g 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 0 t 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0 0
MA0764.2_shift1 (ETV4)				; oligos_6nt_mkv3_m15 versus MA0764.2 (ETV4); m=2/5; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.436794; -rcAGGAAGyr--- ; cor=; Ncor= a 0 3119.0 1206.0 8353.0 0.0 1.0 8374.0 8333.0 11.0 1296.0 2336.0 0 0 0 c 0 1494.0 4608.0 61.0 92.0 1.0 0.0 73.0 28.0 2194.0 1597.0 0 0 0 g 0 2721.0 1936.0 0.0 8308.0 8345.0 0.0 0.0 8344.0 1949.0 3055.0 0 0 0 t 0 1080.0 664.0 0.0 14.0 67.0 40.0 8.0 31.0 2975.0 1426.0 0 0 0
MA0645.1_shift1 (ETV6)				; oligos_6nt_mkv3_m15 versus MA0645.1 (ETV6); m=3/5; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.433041; -msCGGAAGTr--- ; cor=; Ncor= a 0 9414.0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 0 0 c 0 6562.0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 0 0 g 0 4684.0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 0 0 t 0 2002.0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0 0 0
MA0136.2_shift0 (ELF5)				; oligos_6nt_mkv3_m15 versus MA0136.2 (ELF5); m=4/5; ncol2=11; w=8; offset=-3; strand=D; shift=0; score=0.422883; acsmGGAAGtr--- ; cor=; Ncor= a 2416.0 1221.0 987.0 1458.0 3.0 5.0 2699.0 2646.0 890.0 477.0 959.0 0 0 0 c 252.0 2298.0 2453.0 2528.0 0.0 0.0 11.0 61.0 155.0 716.0 371.0 0 0 0 g 301.0 955.0 1266.0 309.0 3307.0 3315.0 1.0 0.0 2857.0 312.0 762.0 0 0 0 t 793.0 866.0 97.0 56.0 20.0 25.0 4.0 245.0 84.0 2470.0 663.0 0 0 0
MA1484.1_shift0 (ETS2)				; oligos_6nt_mkv3_m15 versus MA1484.1 (ETS2); m=5/5; ncol2=10; w=7; offset=-3; strand=D; shift=0; score=0.403982; rACCGGAWGy---- ; cor=; Ncor= a 5261.0 16738.0 643.0 1279.0 7.0 4.0 16738.0 11582.0 3050.0 0.0 0 0 0 0 c 2830.0 471.0 16738.0 16738.0 0.0 7.0 13.0 204.0 0.0 8136.0 0 0 0 0 g 5702.0 3136.0 1306.0 0.0 16738.0 16738.0 7.0 0.0 13730.0 415.0 0 0 0 0 t 2945.0 727.0 0.0 0.0 5.0 0.0 0.0 4953.0 0.0 8190.0 0 0 0 0