One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m18/peak-motifs_oligos_6nt_mkv3_m18.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m18/peak-motifs_oligos_6nt_mkv3_m18_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m18_shift0 ; 9 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv3_m18_shift0 (oligos_6nt_mkv3_m18oligos_6nt_mkv3_m18)     
; oligos_6nt_mkv3_m18 (oligos_6nt_mkv3_m18oligos_6nt_mkv3_m18); m=0 (reference); ncol1=12; shift=0; ncol=18; yymCATTCCAkt------
; Alignment reference
a	63	63	302	11	440	2	11	7	2	334	64	82	0	0	0	0	0	0
c	125	155	126	400	3	3	7	434	441	34	90	102	0	0	0	0	0	0
g	86	68	15	14	8	4	4	1	0	13	123	101	0	0	0	0	0	0
t	179	167	10	28	2	444	431	11	10	72	176	168	0	0	0	0	0	0
MA0809.2_shift0 (TEAD4) 
; oligos_6nt_mkv3_m18 versus MA0809.2 (TEAD4); m=1/8; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.972595; ycACATTCCAgs------
; cor=; Ncor=
a	18932.0	17306.0	61263.0	7543.0	74797.0	965.0	2673.0	1366.0	1314.0	61802.0	16617.0	19272.0	0	0	0	0	0	0
c	22343.0	26577.0	2414.0	66205.0	1218.0	1129.0	1176.0	72555.0	75066.0	3874.0	13864.0	20301.0	0	0	0	0	0	0
g	15111.0	15427.0	11265.0	3295.0	569.0	1025.0	2100.0	1580.0	212.0	1191.0	32220.0	22630.0	0	0	0	0	0	0
t	21700.0	18776.0	3144.0	1043.0	1502.0	74967.0	72137.0	2585.0	1494.0	11219.0	15385.0	15883.0	0	0	0	0	0	0
MA1121.1_shift0 (TEAD2) 
; oligos_6nt_mkv3_m18 versus MA1121.1 (TEAD2); m=2/8; ncol2=13; w=12; offset=0; strand=D; shift=0; score=0.890023; hcACATTCCwgsc-----
; cor=; Ncor=
a	137.0	88.0	441.0	39.0	517.0	2.0	15.0	8.0	8.0	263.0	112.0	111.0	109.0	0	0	0	0	0
c	145.0	238.0	17.0	478.0	5.0	10.0	8.0	500.0	513.0	60.0	111.0	172.0	221.0	0	0	0	0	0
g	112.0	81.0	70.0	14.0	11.0	6.0	9.0	10.0	3.0	56.0	207.0	147.0	117.0	0	0	0	0	0
t	148.0	135.0	14.0	11.0	9.0	524.0	510.0	24.0	18.0	163.0	112.0	112.0	95.0	0	0	0	0	0
MA0090.3_shift0 (TEAD1) 
; oligos_6nt_mkv3_m18 versus MA0090.3 (TEAD1); m=3/8; ncol2=13; w=12; offset=0; strand=D; shift=0; score=0.875101; hyACATTCCAGsm-----
; cor=; Ncor=
a	17689.0	16651.0	58030.0	6096.0	68106.0	535.0	4976.0	1348.0	702.0	57190.0	9124.0	13252.0	19194.0	0	0	0	0	0
c	19272.0	22059.0	1248.0	61276.0	646.0	700.0	622.0	66953.0	67635.0	1729.0	6215.0	20002.0	21358.0	0	0	0	0	0
g	14429.0	12053.0	9179.0	1923.0	946.0	646.0	1210.0	765.0	374.0	2051.0	47856.0	26525.0	16344.0	0	0	0	0	0
t	19008.0	19635.0	1941.0	1103.0	700.0	68517.0	63590.0	1332.0	1687.0	9428.0	7203.0	10619.0	13502.0	0	0	0	0	0
MA0808.1_shift2 (TEAD3) 
; oligos_6nt_mkv3_m18 versus MA0808.1 (TEAD3); m=4/8; ncol2=8; w=8; offset=2; strand=D; shift=2; score=0.634584; --rCATTCCw--------
; cor=; Ncor=
a	0	0	12530.0	2524.0	21444.0	0.0	4566.0	0.0	0.0	21444.0	0	0	0	0	0	0	0	0
c	0	0	66.0	18920.0	0.0	0.0	23.0	21444.0	21444.0	1039.0	0	0	0	0	0	0	0	0
g	0	0	8913.0	441.0	0.0	0.0	969.0	0.0	0.0	8654.0	0	0	0	0	0	0	0	0
t	0	0	1109.0	0.0	0.0	21444.0	16878.0	0.0	4.0	13663.0	0	0	0	0	0	0	0	0
MA0624.1_shift2 (NFATC1) 
; oligos_6nt_mkv3_m18 versus MA0624.1 (NFATC1); m=5/8; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.611846; --wttTTCCryt------
; cor=; Ncor=
a	0	0	383.0	226.0	158.0	19.0	21.0	14.0	9.0	516.0	230.0	230.0	0	0	0	0	0	0
c	0	0	134.0	193.0	60.0	35.0	29.0	971.0	967.0	45.0	262.0	227.0	0	0	0	0	0	0
g	0	0	167.0	189.0	122.0	7.0	15.0	8.0	5.0	357.0	126.0	194.0	0	0	0	0	0	0
t	0	0	316.0	392.0	660.0	939.0	935.0	7.0	18.0	83.0	383.0	349.0	0	0	0	0	0	0
MA0625.1_shift2 (NFATC3) 
; oligos_6nt_mkv3_m18 versus MA0625.1 (NFATC3); m=6/8; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.590172; --wtTTTCCryt------
; cor=; Ncor=
a	0	0	421.0	179.0	117.0	14.0	3.0	36.0	8.0	552.0	173.0	215.0	0	0	0	0	0	0
c	0	0	93.0	181.0	40.0	10.0	23.0	933.0	959.0	39.0	251.0	211.0	0	0	0	0	0	0
g	0	0	139.0	168.0	73.0	5.0	9.0	1.0	23.0	342.0	133.0	173.0	0	0	0	0	0	0
t	0	0	348.0	472.0	770.0	971.0	966.0	30.0	10.0	67.0	443.0	400.0	0	0	0	0	0	0
MA1525.1_rc_shift2 (NFATC4_rc) 
; oligos_6nt_mkv3_m18 versus MA1525.1_rc (NFATC4_rc); m=7/8; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.589689; --wkTTTCCryt------
; cor=; Ncor=
a	0	0	2239.0	1292.0	259.0	0.0	0.0	0.0	0.0	2816.0	843.0	819.0	0	0	0	0	0	0
c	0	0	348.0	1789.0	127.0	0.0	0.0	4349.0	4349.0	0.0	2369.0	963.0	0	0	0	0	0	0
g	0	0	632.0	3276.0	1084.0	0.0	39.0	0.0	0.0	1534.0	329.0	916.0	0	0	0	0	0	0
t	0	0	1132.0	4349.0	4349.0	4349.0	4349.0	0.0	0.0	95.0	4349.0	1652.0	0	0	0	0	0	0
MA0752.1_shift1 (ZNF410) 
; oligos_6nt_mkv3_m18 versus MA0752.1 (ZNF410); m=8/8; ncol2=17; w=11; offset=1; strand=D; shift=1; score=0.428845; -tmCATCCCATAATAhtc
; cor=; Ncor=
a	0	661.0	1715.0	1.0	3985.0	50.0	69.0	12.0	0.0	3985.0	0.0	3987.0	3983.0	4.0	3930.0	1069.0	172.0	798.0
c	0	700.0	1872.0	3641.0	2.0	33.0	3949.0	3986.0	3986.0	5.0	9.0	8.0	2.0	6.0	17.0	1285.0	818.0	2628.0
g	0	950.0	399.0	0.0	1.0	124.0	1.0	0.0	1.0	1.0	0.0	0.0	3.0	0.0	43.0	619.0	788.0	93.0
t	0	1677.0	2.0	370.0	4.0	3827.0	4.0	0.0	0.0	2.0	3987.0	0.0	1.0	3984.0	24.0	1015.0	2274.0	520.0