Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf
		file1	1	12	660
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m2 MA1620.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 Ptf1a(var.3) 0.942 0.942 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 MA0499.2 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 MYOD1 0.977 0.902 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_6nt_mkv3_m2 MA0745.2 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 SNAI2 0.976 0.901 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_6nt_mkv3_m2 MA1621.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 Rbpjl 0.946 0.811 12 14 12 14 0.8571 1.0000 0.8571 D -1
oligos_6nt_mkv3_m2 MA0103.3 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 ZEB1 0.884 0.810 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_6nt_mkv3_m2 MA0830.2 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TCF4 0.865 0.798 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_6nt_mkv3_m2 MA1559.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 SNAI3 0.940 0.784 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA1619.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 Ptf1a(var.2) 0.775 0.775 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 MA1641.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 MYF5 0.773 0.773 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m2 MA1631.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 ASCL1(var.2) 0.837 0.773 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_6nt_mkv3_m2 MA0521.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 Tcf12 0.841 0.771 12 11 11 12 0.9167 0.9167 1.0000 R 0
oligos_6nt_mkv3_m2 MA0783.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 PKNOX2 0.761 0.761 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m2 MA0820.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 FIGLA 0.910 0.758 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6nt_mkv3_m2 MA1558.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 SNAI1 0.907 0.756 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA1648.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TCF12(var.2) 0.809 0.741 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_6nt_mkv3_m2 MA0522.3 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TCF3 0.803 0.736 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_6nt_mkv3_m2 MA0500.2 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 MYOG 0.726 0.726 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 MA0797.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TGIF2 0.710 0.710 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m2 MA1618.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 Ptf1a 0.765 0.706 12 13 12 13 0.9231 1.0000 0.9231 R -1
oligos_6nt_mkv3_m2 MA1109.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 NEUROD1 0.752 0.694 12 13 12 13 0.9231 1.0000 0.9231 R -1
oligos_6nt_mkv3_m2 MA1642.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 NEUROG2(var.2) 0.737 0.681 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_6nt_mkv3_m2 MA0743.2 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 SCRT1 0.880 0.660 12 16 12 16 0.7500 1.0000 0.7500 R 0
oligos_6nt_mkv3_m2 MA0744.2 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 SCRT2 0.866 0.649 12 16 12 16 0.7500 1.0000 0.7500 R 0
oligos_6nt_mkv3_m2 MA0626.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 Npas2 0.773 0.644 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6nt_mkv3_m2 MA1485.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 FERD3L 0.750 0.643 12 14 12 14 0.8571 1.0000 0.8571 D -1
oligos_6nt_mkv3_m2 MA0819.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 CLOCK 0.770 0.642 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA1100.2 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 ASCL1 0.769 0.641 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA1105.2 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 GRHL2 0.756 0.640 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_6nt_mkv3_m2 MA1472.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 BHLHA15(var.2) 0.765 0.637 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6nt_mkv3_m2 MA1493.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 HES6 0.759 0.632 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6nt_mkv3_m2 MA1467.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 ATOH1(var.2) 0.756 0.630 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA0665.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 MSC 0.756 0.630 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6nt_mkv3_m2 MA0667.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 MYF6 0.754 0.628 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6nt_mkv3_m2 MA0832.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 Tcf21 0.712 0.611 12 14 12 14 0.8571 1.0000 0.8571 R -1
oligos_6nt_mkv3_m2 MA1108.2 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 MXI1 0.730 0.608 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6nt_mkv3_m2 MA0823.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 HEY1 0.724 0.604 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA0100.3 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 MYB 0.721 0.601 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6nt_mkv3_m2 MA1570.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TFAP4(var.2) 0.720 0.600 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA0816.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 Ascl2 0.719 0.599 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6nt_mkv3_m2 MA0825.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 MNT 0.719 0.599 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA0058.3 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 MAX 0.718 0.599 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA1638.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 HAND2 0.718 0.598 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA1635.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 BHLHE22(var.2) 0.716 0.596 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA0649.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 HEY2 0.707 0.589 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA0691.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TFAP4 0.705 0.588 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv3_m2 MA0807.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TBX5 0.853 0.569 12 8 8 12 0.6667 0.6667 1.0000 R 0
oligos_6nt_mkv3_m2 MA0806.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TBX4 0.836 0.557 12 8 8 12 0.6667 0.6667 1.0000 R 0
oligos_6nt_mkv3_m2 MA0803.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TBX15 0.800 0.534 12 8 8 12 0.6667 0.6667 1.0000 R 0
oligos_6nt_mkv3_m2 MA0608.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 Creb3l2 0.701 0.526 12 9 9 12 0.7500 0.7500 1.0000 D 1
oligos_6nt_mkv3_m2 MA0805.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TBX1 0.778 0.519 12 8 8 12 0.6667 0.6667 1.0000 R 0
oligos_6nt_mkv3_m2 MA0801.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 MGA 0.764 0.509 12 8 8 12 0.6667 0.6667 1.0000 R 0
oligos_6nt_mkv3_m2 MA0622.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 Mlxip 0.763 0.508 12 8 8 12 0.6667 0.6667 1.0000 D 2
oligos_6nt_mkv3_m2 MA1567.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TBX6 0.734 0.508 12 10 9 13 0.6923 0.7500 0.9000 R -1
oligos_6nt_mkv3_m2 MA1566.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TBX3 0.719 0.498 12 10 9 13 0.6923 0.7500 0.9000 R -1
oligos_6nt_mkv3_m2 MA0802.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 TBR1 0.792 0.452 12 10 8 14 0.5714 0.6667 0.8000 R -2
oligos_6nt_mkv3_m2 MA0774.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 MEIS2 0.790 0.425 12 8 7 13 0.5385 0.5833 0.8750 R 5
oligos_6nt_mkv3_m2 MA0775.1 oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2 MEIS3 0.763 0.411 12 8 7 13 0.5385 0.5833 0.8750 R 5 
 Host name	pedagogix
 Job started	2020-04-13.223840
 Job done	2020-04-13.223939
 Seconds	7.88
	user	7.88
	system	0.96
	cuser	46.23
;	csystem	2.87