One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m20/peak-motifs_oligos_6nt_mkv3_m20.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m20/peak-motifs_oligos_6nt_mkv3_m20_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m20_shift7 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m20_shift7 (oligos_6nt_mkv3_m20oligos_6nt_mkv3_m20)
; oligos_6nt_mkv3_m20 (oligos_6nt_mkv3_m20oligos_6nt_mkv3_m20); m=0 (reference); ncol1=10; shift=7; ncol=17; -------ssAGGCCAss ; Alignment reference a 0 0 0 0 0 0 0 180 158 853 0 0 0 0 853 135 202 c 0 0 0 0 0 0 0 270 360 0 1 0 853 853 0 257 292 g 0 0 0 0 0 0 0 220 259 0 852 853 0 0 0 351 252 t 0 0 0 0 0 0 0 183 76 0 0 0 0 0 0 110 107

MA0160.1_shift8 (NR4A2)
; oligos_6nt_mkv3_m20 versus MA0160.1 (NR4A2); m=1/11; ncol2=8; w=8; offset=1; strand=D; shift=8; score=0.62262; --------aAGGTCAc- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8.0 13.0 0.0 3.0 2.0 0.0 14.0 3.0 0 c 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 2.0 13.0 0.0 8.0 0 g 0 0 0 0 0 0 0 0 3.0 1.0 13.0 11.0 0.0 0.0 0.0 2.0 0 t 0 0 0 0 0 0 0 0 1.0 0.0 1.0 0.0 10.0 1.0 0.0 0.0 0

MA1615.1_shift4 (Plagl1)
; oligos_6nt_mkv3_m20 versus MA1615.1 (Plagl1); m=2/11; ncol2=13; w=10; offset=-3; strand=D; shift=4; score=0.551231; ----ssctGGGGCCAss ; cor=; Ncor= a 0 0 0 0 2780.0 2888.0 2138.0 1919.0 197.0 1213.0 187.0 180.0 782.0 181.0 12064.0 2093.0 3414.0 c 0 0 0 0 4515.0 4401.0 7309.0 1471.0 243.0 356.0 266.0 336.0 12737.0 13152.0 686.0 4618.0 3614.0 g 0 0 0 0 4260.0 4030.0 3026.0 1338.0 13595.0 12261.0 13517.0 13495.0 313.0 422.0 1032.0 4852.0 4567.0 t 0 0 0 0 2598.0 2834.0 1680.0 9425.0 118.0 323.0 183.0 142.0 321.0 398.0 371.0 2590.0 2558.0

MA1540.1_shift5 (NR5A1)
; oligos_6nt_mkv3_m20 versus MA1540.1 (NR5A1); m=3/11; ncol2=11; w=9; offset=-2; strand=D; shift=5; score=0.548121; -----kyCAAGGyCry- ; cor=; Ncor= a 0 0 0 0 0 767.0 906.0 84.0 4118.0 4118.0 0.0 0.0 951.0 70.0 4118.0 849.0 0 c 0 0 0 0 0 991.0 1690.0 4118.0 0.0 128.0 0.0 0.0 2021.0 4118.0 242.0 1323.0 0 g 0 0 0 0 0 1268.0 902.0 716.0 287.0 137.0 4118.0 4118.0 381.0 218.0 1684.0 820.0 0 t 0 0 0 0 0 1093.0 2428.0 135.0 4.0 143.0 86.0 0.0 4118.0 651.0 287.0 1126.0 0

MA1150.1_shift5 (RORB)
; oligos_6nt_mkv3_m20 versus MA1150.1 (RORB); m=4/11; ncol2=11; w=9; offset=-2; strand=D; shift=5; score=0.544938; -----AwttrGGTCAy- ; cor=; Ncor= a 0 0 0 0 0 785.0 526.0 233.0 53.0 602.0 16.0 32.0 28.0 47.0 896.0 205.0 0 c 0 0 0 0 0 14.0 26.0 162.0 165.0 14.0 25.0 13.0 146.0 781.0 15.0 326.0 0 g 0 0 0 0 0 29.0 24.0 201.0 235.0 358.0 907.0 928.0 50.0 17.0 63.0 145.0 0 t 0 0 0 0 0 172.0 425.0 403.0 547.0 26.0 52.0 27.0 776.0 155.0 26.0 324.0 0

MA0505.1_shift2 (Nr5a2)
; oligos_6nt_mkv3_m20 versus MA0505.1 (Nr5a2); m=5/11; ncol2=15; w=10; offset=-5; strand=D; shift=2; score=0.50947; --ragtTCAAGGyCAgs ; cor=; Ncor= a 0 0 645.0 985.0 276.0 122.0 71.0 8.0 1685.0 1679.0 39.0 0.0 169.0 0.0 1437.0 271.0 249.0 c 0 0 224.0 170.0 198.0 378.0 351.0 1616.0 14.0 0.0 0.0 0.0 584.0 1568.0 20.0 345.0 693.0 g 0 0 634.0 336.0 990.0 366.0 23.0 74.0 0.0 23.0 1663.0 1702.0 61.0 12.0 90.0 740.0 454.0 t 0 0 199.0 211.0 238.0 836.0 1257.0 4.0 3.0 0.0 0.0 0.0 888.0 122.0 155.0 346.0 306.0

MA0071.1_shift5 (RORA)
; oligos_6nt_mkv3_m20 versus MA0071.1 (RORA); m=6/11; ncol2=10; w=8; offset=-2; strand=D; shift=5; score=0.493396; -----wwcwAGGTCA-- ; cor=; Ncor= a 0 0 0 0 0 15.0 9.0 6.0 11.0 21.0 0.0 0.0 0.0 0.0 25.0 0 0 c 0 0 0 0 0 1.0 1.0 12.0 2.0 0.0 0.0 0.0 0.0 25.0 0.0 0 0 g 0 0 0 0 0 2.0 0.0 4.0 5.0 4.0 25.0 25.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 7.0 15.0 3.0 7.0 0.0 0.0 0.0 25.0 0.0 0.0 0 0

MA0146.2_rc_shift8 (Zfx_rc)
; oligos_6nt_mkv3_m20 versus MA0146.2_rc (Zfx_rc); m=7/11; ncol2=14; w=9; offset=1; strand=R; shift=8; score=0.487869; --------sAGGCCbvG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 56.0 480.0 1.0 0.0 1.0 1.0 15.0 144.0 112.0 c 0 0 0 0 0 0 0 0 218.0 0.0 0.0 0.0 477.0 470.0 122.0 183.0 2.0 g 0 0 0 0 0 0 0 0 122.0 1.0 480.0 481.0 3.0 2.0 153.0 124.0 361.0 t 0 0 0 0 0 0 0 0 84.0 0.0 0.0 0.0 0.0 8.0 191.0 30.0 6.0

MA0119.1_shift2 (NFIC::TLX1)
; oligos_6nt_mkv3_m20 versus MA0119.1 (NFIC::TLX1); m=8/11; ncol2=14; w=9; offset=-5; strand=D; shift=2; score=0.437906; --TGGCAssrwGCCAA- ; cor=; Ncor= a 0 0 0.0 0.0 0.0 0.0 14.0 2.0 2.0 7.0 4.0 0.0 0.0 0.0 16.0 14.0 0 c 0 0 0.0 0.0 0.0 16.0 1.0 8.0 8.0 1.0 3.0 0.0 16.0 16.0 0.0 0.0 0 g 0 0 0.0 16.0 16.0 0.0 0.0 5.0 4.0 5.0 2.0 16.0 0.0 0.0 0.0 1.0 0 t 0 0 16.0 0.0 0.0 0.0 1.0 1.0 2.0 3.0 7.0 0.0 0.0 0.0 0.0 1.0 0

MA1527.1_rc_shift0 (NFIC(var.2)_rc)
; oligos_6nt_mkv3_m20 versus MA1527.1_rc (NFIC(var.2)_rc); m=9/11; ncol2=17; w=10; offset=-7; strand=R; shift=0; score=0.426492; syTGGCAcsryGCCAAs ; cor=; Ncor= a 412.0 154.0 0.0 0.0 0.0 0.0 2118.0 379.0 417.0 531.0 461.0 0.0 0.0 0.0 2118.0 2118.0 399.0 c 647.0 1032.0 0.0 0.0 13.0 2118.0 97.0 881.0 678.0 492.0 694.0 0.0 2118.0 2118.0 5.0 65.0 761.0 g 695.0 19.0 0.0 2118.0 2118.0 0.0 340.0 382.0 580.0 705.0 268.0 2118.0 3.0 0.0 0.0 616.0 560.0 t 364.0 1086.0 2118.0 3.0 0.0 0.0 203.0 476.0 443.0 389.0 696.0 100.0 0.0 0.0 0.0 167.0 398.0

MA1528.1_rc_shift0 (NFIX(var.2)_rc)
; oligos_6nt_mkv3_m20 versus MA1528.1_rc (NFIX(var.2)_rc); m=10/11; ncol2=17; w=10; offset=-7; strand=R; shift=0; score=0.424919; syTGGCAcsryGCCAac ; cor=; Ncor= a 3443.0 3322.0 314.0 0.0 0.0 459.0 17346.0 3453.0 3525.0 4455.0 3262.0 175.0 0.0 0.0 17346.0 17346.0 3238.0 c 5740.0 9016.0 63.0 0.0 0.0 17346.0 1423.0 7942.0 5991.0 3846.0 5090.0 0.0 17346.0 17346.0 2386.0 3397.0 6640.0 g 5304.0 2165.0 1856.0 17346.0 17346.0 0.0 2300.0 2529.0 4769.0 5920.0 1890.0 17346.0 0.0 0.0 231.0 3912.0 4287.0 t 2858.0 8330.0 17346.0 0.0 0.0 0.0 1773.0 3423.0 3061.0 3125.0 7104.0 1819.0 0.0 0.0 127.0 4530.0 3182.0

MA1151.1_shift3 (RORC)
; oligos_6nt_mkv3_m20 versus MA1151.1 (RORC); m=11/11; ncol2=12; w=8; offset=-4; strand=D; shift=3; score=0.407627; ---dwAwgTrGGtCA-- ; cor=; Ncor= a 0 0 0 306.0 329.0 855.0 527.0 225.0 43.0 623.0 5.0 36.0 59.0 6.0 785.0 0 0 c 0 0 0 179.0 114.0 14.0 10.0 249.0 87.0 24.0 2.0 3.0 112.0 822.0 12.0 0 0 g 0 0 0 260.0 141.0 11.0 32.0 277.0 116.0 343.0 919.0 952.0 168.0 19.0 161.0 0 0 t 0 0 0 255.0 416.0 120.0 431.0 249.0 753.0 11.0 74.0 8.0 661.0 153.0 42.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m20_shift7 (oligos_6nt_mkv3_m20oligos_6nt_mkv3_m20)				; oligos_6nt_mkv3_m20 (oligos_6nt_mkv3_m20oligos_6nt_mkv3_m20); m=0 (reference); ncol1=10; shift=7; ncol=17; -------ssAGGCCAss ; Alignment reference a 0 0 0 0 0 0 0 180 158 853 0 0 0 0 853 135 202 c 0 0 0 0 0 0 0 270 360 0 1 0 853 853 0 257 292 g 0 0 0 0 0 0 0 220 259 0 852 853 0 0 0 351 252 t 0 0 0 0 0 0 0 183 76 0 0 0 0 0 0 110 107
MA0160.1_shift8 (NR4A2)				; oligos_6nt_mkv3_m20 versus MA0160.1 (NR4A2); m=1/11; ncol2=8; w=8; offset=1; strand=D; shift=8; score=0.62262; --------aAGGTCAc- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8.0 13.0 0.0 3.0 2.0 0.0 14.0 3.0 0 c 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 2.0 13.0 0.0 8.0 0 g 0 0 0 0 0 0 0 0 3.0 1.0 13.0 11.0 0.0 0.0 0.0 2.0 0 t 0 0 0 0 0 0 0 0 1.0 0.0 1.0 0.0 10.0 1.0 0.0 0.0 0
MA1615.1_shift4 (Plagl1)				; oligos_6nt_mkv3_m20 versus MA1615.1 (Plagl1); m=2/11; ncol2=13; w=10; offset=-3; strand=D; shift=4; score=0.551231; ----ssctGGGGCCAss ; cor=; Ncor= a 0 0 0 0 2780.0 2888.0 2138.0 1919.0 197.0 1213.0 187.0 180.0 782.0 181.0 12064.0 2093.0 3414.0 c 0 0 0 0 4515.0 4401.0 7309.0 1471.0 243.0 356.0 266.0 336.0 12737.0 13152.0 686.0 4618.0 3614.0 g 0 0 0 0 4260.0 4030.0 3026.0 1338.0 13595.0 12261.0 13517.0 13495.0 313.0 422.0 1032.0 4852.0 4567.0 t 0 0 0 0 2598.0 2834.0 1680.0 9425.0 118.0 323.0 183.0 142.0 321.0 398.0 371.0 2590.0 2558.0
MA1540.1_shift5 (NR5A1)				; oligos_6nt_mkv3_m20 versus MA1540.1 (NR5A1); m=3/11; ncol2=11; w=9; offset=-2; strand=D; shift=5; score=0.548121; -----kyCAAGGyCry- ; cor=; Ncor= a 0 0 0 0 0 767.0 906.0 84.0 4118.0 4118.0 0.0 0.0 951.0 70.0 4118.0 849.0 0 c 0 0 0 0 0 991.0 1690.0 4118.0 0.0 128.0 0.0 0.0 2021.0 4118.0 242.0 1323.0 0 g 0 0 0 0 0 1268.0 902.0 716.0 287.0 137.0 4118.0 4118.0 381.0 218.0 1684.0 820.0 0 t 0 0 0 0 0 1093.0 2428.0 135.0 4.0 143.0 86.0 0.0 4118.0 651.0 287.0 1126.0 0
MA1150.1_shift5 (RORB)				; oligos_6nt_mkv3_m20 versus MA1150.1 (RORB); m=4/11; ncol2=11; w=9; offset=-2; strand=D; shift=5; score=0.544938; -----AwttrGGTCAy- ; cor=; Ncor= a 0 0 0 0 0 785.0 526.0 233.0 53.0 602.0 16.0 32.0 28.0 47.0 896.0 205.0 0 c 0 0 0 0 0 14.0 26.0 162.0 165.0 14.0 25.0 13.0 146.0 781.0 15.0 326.0 0 g 0 0 0 0 0 29.0 24.0 201.0 235.0 358.0 907.0 928.0 50.0 17.0 63.0 145.0 0 t 0 0 0 0 0 172.0 425.0 403.0 547.0 26.0 52.0 27.0 776.0 155.0 26.0 324.0 0
MA0505.1_shift2 (Nr5a2)				; oligos_6nt_mkv3_m20 versus MA0505.1 (Nr5a2); m=5/11; ncol2=15; w=10; offset=-5; strand=D; shift=2; score=0.50947; --ragtTCAAGGyCAgs ; cor=; Ncor= a 0 0 645.0 985.0 276.0 122.0 71.0 8.0 1685.0 1679.0 39.0 0.0 169.0 0.0 1437.0 271.0 249.0 c 0 0 224.0 170.0 198.0 378.0 351.0 1616.0 14.0 0.0 0.0 0.0 584.0 1568.0 20.0 345.0 693.0 g 0 0 634.0 336.0 990.0 366.0 23.0 74.0 0.0 23.0 1663.0 1702.0 61.0 12.0 90.0 740.0 454.0 t 0 0 199.0 211.0 238.0 836.0 1257.0 4.0 3.0 0.0 0.0 0.0 888.0 122.0 155.0 346.0 306.0
MA0071.1_shift5 (RORA)				; oligos_6nt_mkv3_m20 versus MA0071.1 (RORA); m=6/11; ncol2=10; w=8; offset=-2; strand=D; shift=5; score=0.493396; -----wwcwAGGTCA-- ; cor=; Ncor= a 0 0 0 0 0 15.0 9.0 6.0 11.0 21.0 0.0 0.0 0.0 0.0 25.0 0 0 c 0 0 0 0 0 1.0 1.0 12.0 2.0 0.0 0.0 0.0 0.0 25.0 0.0 0 0 g 0 0 0 0 0 2.0 0.0 4.0 5.0 4.0 25.0 25.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 7.0 15.0 3.0 7.0 0.0 0.0 0.0 25.0 0.0 0.0 0 0
MA0146.2_rc_shift8 (Zfx_rc)				; oligos_6nt_mkv3_m20 versus MA0146.2_rc (Zfx_rc); m=7/11; ncol2=14; w=9; offset=1; strand=R; shift=8; score=0.487869; --------sAGGCCbvG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 56.0 480.0 1.0 0.0 1.0 1.0 15.0 144.0 112.0 c 0 0 0 0 0 0 0 0 218.0 0.0 0.0 0.0 477.0 470.0 122.0 183.0 2.0 g 0 0 0 0 0 0 0 0 122.0 1.0 480.0 481.0 3.0 2.0 153.0 124.0 361.0 t 0 0 0 0 0 0 0 0 84.0 0.0 0.0 0.0 0.0 8.0 191.0 30.0 6.0
MA0119.1_shift2 (NFIC::TLX1)				; oligos_6nt_mkv3_m20 versus MA0119.1 (NFIC::TLX1); m=8/11; ncol2=14; w=9; offset=-5; strand=D; shift=2; score=0.437906; --TGGCAssrwGCCAA- ; cor=; Ncor= a 0 0 0.0 0.0 0.0 0.0 14.0 2.0 2.0 7.0 4.0 0.0 0.0 0.0 16.0 14.0 0 c 0 0 0.0 0.0 0.0 16.0 1.0 8.0 8.0 1.0 3.0 0.0 16.0 16.0 0.0 0.0 0 g 0 0 0.0 16.0 16.0 0.0 0.0 5.0 4.0 5.0 2.0 16.0 0.0 0.0 0.0 1.0 0 t 0 0 16.0 0.0 0.0 0.0 1.0 1.0 2.0 3.0 7.0 0.0 0.0 0.0 0.0 1.0 0
MA1527.1_rc_shift0 (NFIC(var.2)_rc)				; oligos_6nt_mkv3_m20 versus MA1527.1_rc (NFIC(var.2)_rc); m=9/11; ncol2=17; w=10; offset=-7; strand=R; shift=0; score=0.426492; syTGGCAcsryGCCAAs ; cor=; Ncor= a 412.0 154.0 0.0 0.0 0.0 0.0 2118.0 379.0 417.0 531.0 461.0 0.0 0.0 0.0 2118.0 2118.0 399.0 c 647.0 1032.0 0.0 0.0 13.0 2118.0 97.0 881.0 678.0 492.0 694.0 0.0 2118.0 2118.0 5.0 65.0 761.0 g 695.0 19.0 0.0 2118.0 2118.0 0.0 340.0 382.0 580.0 705.0 268.0 2118.0 3.0 0.0 0.0 616.0 560.0 t 364.0 1086.0 2118.0 3.0 0.0 0.0 203.0 476.0 443.0 389.0 696.0 100.0 0.0 0.0 0.0 167.0 398.0
MA1528.1_rc_shift0 (NFIX(var.2)_rc)				; oligos_6nt_mkv3_m20 versus MA1528.1_rc (NFIX(var.2)_rc); m=10/11; ncol2=17; w=10; offset=-7; strand=R; shift=0; score=0.424919; syTGGCAcsryGCCAac ; cor=; Ncor= a 3443.0 3322.0 314.0 0.0 0.0 459.0 17346.0 3453.0 3525.0 4455.0 3262.0 175.0 0.0 0.0 17346.0 17346.0 3238.0 c 5740.0 9016.0 63.0 0.0 0.0 17346.0 1423.0 7942.0 5991.0 3846.0 5090.0 0.0 17346.0 17346.0 2386.0 3397.0 6640.0 g 5304.0 2165.0 1856.0 17346.0 17346.0 0.0 2300.0 2529.0 4769.0 5920.0 1890.0 17346.0 0.0 0.0 231.0 3912.0 4287.0 t 2858.0 8330.0 17346.0 0.0 0.0 0.0 1773.0 3423.0 3061.0 3125.0 7104.0 1819.0 0.0 0.0 127.0 4530.0 3182.0
MA1151.1_shift3 (RORC)				; oligos_6nt_mkv3_m20 versus MA1151.1 (RORC); m=11/11; ncol2=12; w=8; offset=-4; strand=D; shift=3; score=0.407627; ---dwAwgTrGGtCA-- ; cor=; Ncor= a 0 0 0 306.0 329.0 855.0 527.0 225.0 43.0 623.0 5.0 36.0 59.0 6.0 785.0 0 0 c 0 0 0 179.0 114.0 14.0 10.0 249.0 87.0 24.0 2.0 3.0 112.0 822.0 12.0 0 0 g 0 0 0 260.0 141.0 11.0 32.0 277.0 116.0 343.0 919.0 952.0 168.0 19.0 161.0 0 0 t 0 0 0 255.0 416.0 120.0 431.0 249.0 753.0 11.0 74.0 8.0 661.0 153.0 42.0 0 0