Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m22/peak-motifs_oligos_6nt_mkv3_m22_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m22/peak-motifs_oligos_6nt_mkv3_m22.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m22/peak-motifs_oligos_6nt_mkv3_m22_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m22/peak-motifs_oligos_6nt_mkv3_m22.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m22/peak-motifs_oligos_6nt_mkv3_m22_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m22/peak-motifs_oligos_6nt_mkv3_m22_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m22/peak-motifs_oligos_6nt_mkv3_m22_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m22/peak-motifs_oligos_6nt_mkv3_m22_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m22/peak-motifs_oligos_6nt_mkv3_m22_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m22/peak-motifs_oligos_6nt_mkv3_m22_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m22/peak-motifs_oligos_6nt_mkv3_m22.tf
		file1	1	13	538
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m22 MA1631.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 ASCL1(var.2) 0.985 0.985 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m22 MA0830.2 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 TCF4 0.981 0.981 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m22 MA0499.2 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 MYOD1 0.889 0.889 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m22 MA0745.2 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 SNAI2 0.888 0.888 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m22 MA1648.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 TCF12(var.2) 0.935 0.791 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_6nt_mkv3_m22 MA0522.3 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 TCF3 0.932 0.788 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_6nt_mkv3_m22 MA1621.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 Rbpjl 0.845 0.785 13 14 13 14 0.9286 1.0000 0.9286 D -1
oligos_6nt_mkv3_m22 MA0103.3 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 ZEB1 0.917 0.776 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_6nt_mkv3_m22 MA1620.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 Ptf1a(var.3) 0.818 0.755 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_6nt_mkv3_m22 MA1558.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 SNAI1 0.944 0.726 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv3_m22 MA0822.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 HES7 0.772 0.713 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_6nt_mkv3_m22 MA0821.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 HES5 0.769 0.710 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_6nt_mkv3_m22 MA0500.2 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 MYOG 0.754 0.696 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_6nt_mkv3_m22 MA1559.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 SNAI3 0.904 0.695 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv3_m22 MA0521.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 Tcf12 0.788 0.667 13 11 11 13 0.8462 0.8462 1.0000 R 0
oligos_6nt_mkv3_m22 MA1100.2 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 ASCL1 0.847 0.651 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv3_m22 MA0147.3 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 MYC 0.701 0.647 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_6nt_mkv3_m22 MA0820.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 FIGLA 0.812 0.624 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6nt_mkv3_m22 MA0816.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 Ascl2 0.778 0.599 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6nt_mkv3_m22 MA0048.2 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 NHLH1 0.778 0.598 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6nt_mkv3_m22 MA0616.2 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 HES2 0.765 0.589 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv3_m22 MA0823.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 HEY1 0.758 0.583 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6nt_mkv3_m22 MA0649.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 HEY2 0.757 0.582 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv3_m22 MA1560.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 SOHLH2 0.744 0.572 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6nt_mkv3_m22 MA1635.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 BHLHE22(var.2) 0.736 0.566 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv3_m22 MA0464.2 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 BHLHE40 0.732 0.563 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6nt_mkv3_m22 MA0825.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 MNT 0.731 0.562 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6nt_mkv3_m22 MA0058.3 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 MAX 0.719 0.553 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6nt_mkv3_m22 MA1472.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 BHLHA15(var.2) 0.716 0.551 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv3_m22 MA0100.3 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 MYB 0.715 0.550 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6nt_mkv3_m22 MA1464.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 ARNT2 0.711 0.547 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv3_m22 MA0626.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 Npas2 0.711 0.547 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6nt_mkv3_m22 MA1108.2 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 MXI1 0.709 0.546 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6nt_mkv3_m22 MA1493.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 HES6 0.709 0.545 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv3_m22 MA1099.2 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 HES1 0.702 0.540 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv3_m22 MA0807.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 TBX5 0.787 0.485 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_6nt_mkv3_m22 MA0806.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 TBX4 0.775 0.477 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_6nt_mkv3_m22 MA0803.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 TBX15 0.727 0.448 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_6nt_mkv3_m22 MA0622.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 Mlxip 0.713 0.439 13 8 8 13 0.6154 0.6154 1.0000 D 2
oligos_6nt_mkv3_m22 MA0805.1 oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22 TBX1 0.706 0.434 13 8 8 13 0.6154 0.6154 1.0000 R 0 
 Host name	pedagogix
 Job started	2020-04-13.224423
 Job done	2020-04-13.224500
 Seconds	4.86
	user	4.86
	system	0.6
	cuser	28.51
;	csystem	2.13