Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m23/peak-motifs_oligos_6nt_mkv3_m23_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m23/peak-motifs_oligos_6nt_mkv3_m23.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m23/peak-motifs_oligos_6nt_mkv3_m23_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m23/peak-motifs_oligos_6nt_mkv3_m23.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m23/peak-motifs_oligos_6nt_mkv3_m23_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m23/peak-motifs_oligos_6nt_mkv3_m23_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m23/peak-motifs_oligos_6nt_mkv3_m23_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m23/peak-motifs_oligos_6nt_mkv3_m23_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m23/peak-motifs_oligos_6nt_mkv3_m23_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m23/peak-motifs_oligos_6nt_mkv3_m23_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m23/peak-motifs_oligos_6nt_mkv3_m23.tf
		file1	1	10	441
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m23 MA0672.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 NKX2-3 0.883 0.883 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m23 MA0673.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 NKX2-8 0.871 0.784 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv3_m23 MA1108.2 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 MXI1 0.782 0.782 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m23 MA0626.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 Npas2 0.782 0.782 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m23 MA1558.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 SNAI1 0.779 0.779 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m23 MA0058.3 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 MAX 0.767 0.767 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m23 MA0825.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 MNT 0.760 0.760 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m23 MA0100.3 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 MYB 0.759 0.759 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m23 MA0820.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 FIGLA 0.741 0.741 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m23 MA0819.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 CLOCK 0.740 0.740 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m23 MA0823.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 HEY1 0.740 0.740 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m23 MA0692.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 TFEB 0.734 0.734 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m23 MA1464.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 ARNT2 0.729 0.729 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m23 MA0464.2 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 BHLHE40 0.728 0.728 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m23 MA0649.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 HEY2 0.725 0.725 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m23 MA1559.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 SNAI3 0.723 0.723 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m23 MA0664.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 MLXIPL 0.718 0.718 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m23 MA1560.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 SOHLH2 0.715 0.715 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m23 MA0616.2 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 HES2 0.701 0.701 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m23 MA0103.3 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 ZEB1 0.768 0.698 10 11 10 11 0.9091 1.0000 0.9091 R -1
oligos_6nt_mkv3_m23 MA0124.2 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 Nkx3-1 0.764 0.687 10 9 9 10 0.9000 0.9000 1.0000 R 1
oligos_6nt_mkv3_m23 MA0522.3 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 TCF3 0.717 0.652 10 11 10 11 0.9091 1.0000 0.9091 R -1
oligos_6nt_mkv3_m23 MA0608.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 Creb3l2 0.717 0.646 10 9 9 10 0.9000 0.9000 1.0000 D 0
oligos_6nt_mkv3_m23 MA1648.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 TCF12(var.2) 0.708 0.644 10 11 10 11 0.9091 1.0000 0.9091 R -1
oligos_6nt_mkv3_m23 MA1620.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 Ptf1a(var.3) 0.743 0.619 10 12 10 12 0.8333 1.0000 0.8333 R -1
oligos_6nt_mkv3_m23 MA0147.3 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 MYC 0.741 0.618 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6nt_mkv3_m23 MA0622.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 Mlxip 0.764 0.612 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6nt_mkv3_m23 MA0104.4 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 MYCN 0.724 0.603 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6nt_mkv3_m23 MA1524.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 MSGN1 0.718 0.599 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6nt_mkv3_m23 MA0603.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 Arntl 0.719 0.588 10 10 9 11 0.8182 0.9000 0.9000 R 1
oligos_6nt_mkv3_m23 MA0914.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 ISL2 0.713 0.570 10 8 8 10 0.8000 0.8000 1.0000 R 1
oligos_6nt_mkv3_m23 MA0122.3 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 Nkx3-2 0.737 0.567 10 13 10 13 0.7692 1.0000 0.7692 R 0
oligos_6nt_mkv3_m23 MA0831.2 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 TFE3 0.705 0.564 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6nt_mkv3_m23 MA0830.2 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 TCF4 0.732 0.563 10 13 10 13 0.7692 1.0000 0.7692 R -2
oligos_6nt_mkv3_m23 MA0745.2 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 SNAI2 0.730 0.561 10 13 10 13 0.7692 1.0000 0.7692 R -2
oligos_6nt_mkv3_m23 MA1631.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 ASCL1(var.2) 0.709 0.545 10 13 10 13 0.7692 1.0000 0.7692 R -2
oligos_6nt_mkv3_m23 MA1621.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 Rbpjl 0.752 0.537 10 14 10 14 0.7143 1.0000 0.7143 R -2
oligos_6nt_mkv3_m23 MA0526.3 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 USF2 0.707 0.505 10 14 10 14 0.7143 1.0000 0.7143 D -2
oligos_6nt_mkv3_m23 MA0806.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 TBX4 0.742 0.472 10 8 7 11 0.6364 0.7000 0.8750 D 3
oligos_6nt_mkv3_m23 MA0807.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 TBX5 0.721 0.459 10 8 7 11 0.6364 0.7000 0.8750 D 3
oligos_6nt_mkv3_m23 MA0004.1 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 Arnt 0.758 0.455 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6nt_mkv3_m23 MA0743.2 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 SCRT1 0.702 0.439 10 16 10 16 0.6250 1.0000 0.6250 D -5
oligos_6nt_mkv3_m23 MA0161.2 oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23 NFIC 0.704 0.433 10 11 8 13 0.6154 0.8000 0.7273 R -3 
 Host name	pedagogix
 Job started	2020-04-13.224500
 Job done	2020-04-13.224542
 Seconds	5.99
	user	6
	system	0.73
	cuser	32.83
;	csystem	2.11