One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m24/peak-motifs_oligos_6nt_mkv3_m24.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m24/peak-motifs_oligos_6nt_mkv3_m24_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m24_shift3 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m24_shift3 (oligos_6nt_mkv3_m24oligos_6nt_mkv3_m24)
; oligos_6nt_mkv3_m24 (oligos_6nt_mkv3_m24oligos_6nt_mkv3_m24); m=0 (reference); ncol1=10; shift=3; ncol=14; ---sgCGCACGss- ; Alignment reference a 0 0 0 14 31 0 0 4 132 0 0 16 31 0 c 0 0 0 94 42 180 0 157 6 180 0 91 49 0 g 0 0 0 50 94 0 180 3 40 0 180 46 87 0 t 0 0 0 22 13 0 0 16 2 0 0 27 13 0

MA0506.1_rc_shift3 (NRF1_rc)
; oligos_6nt_mkv3_m24 versus MA0506.1_rc (NRF1_rc); m=1/14; ncol2=11; w=10; offset=0; strand=R; shift=3; score=0.715631; ---yGCGCAkGCGC ; cor=; Ncor= a 0 0 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 0.0 c 0 0 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 3647.0 g 0 0 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 375.0 t 0 0 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0 602.0

MA0472.2_shift2 (EGR2)
; oligos_6nt_mkv3_m24 versus MA0472.2 (EGR2); m=2/14; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.640203; --mCGCCCACGCa- ; cor=; Ncor= a 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 c 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 g 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 t 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0

MA1106.1_rc_shift4 (HIF1A_rc)
; oligos_6nt_mkv3_m24 versus MA1106.1_rc (HIF1A_rc); m=3/14; ncol2=10; w=9; offset=1; strand=R; shift=4; score=0.614495; ----ssGCACGTvc ; cor=; Ncor= a 0 0 0 0 230.0 227.0 35.0 11.0 934.0 0.0 1.0 2.0 342.0 140.0 c 0 0 0 0 271.0 257.0 20.0 844.0 11.0 979.0 0.0 2.0 263.0 414.0 g 0 0 0 0 315.0 290.0 837.0 41.0 33.0 0.0 979.0 0.0 270.0 229.0 t 0 0 0 0 164.0 206.0 88.0 84.0 2.0 1.0 0.0 976.0 105.0 197.0

MA0131.2_rc_shift2 (HINFP_rc)
; oligos_6nt_mkv3_m24 versus MA0131.2_rc (HINFP_rc); m=4/14; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.59753; --mcGCGGACGytg ; cor=; Ncor= a 0 0 107.0 97.0 12.0 21.0 3.0 0.0 470.0 10.0 7.0 17.0 53.0 100.0 c 0 0 154.0 188.0 15.0 472.0 0.0 13.0 0.0 484.0 97.0 217.0 113.0 106.0 g 0 0 84.0 55.0 395.0 31.0 413.0 404.0 0.0 14.0 388.0 45.0 131.0 340.0 t 0 0 77.0 85.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 276.0 285.0 23.0

MA1650.1_shift0 (ZBTB14)
; oligos_6nt_mkv3_m24 versus MA1650.1 (ZBTB14); m=5/14; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.58355; ssCCGCGCACss-- ; cor=; Ncor= a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 0 c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 0 g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 0 t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0 0

MA0632.2_rc_shift4 (TCFL5_rc)
; oligos_6nt_mkv3_m24 versus MA0632.2_rc (TCFL5_rc); m=6/14; ncol2=10; w=9; offset=1; strand=R; shift=4; score=0.579735; ----gkGCGCGyGm ; cor=; Ncor= a 0 0 0 0 8670.0 25921.0 635.0 0.0 15451.0 0.0 1643.0 9359.0 0.0 36854.0 c 0 0 0 0 5747.0 19096.0 4594.0 72543.0 0.0 72543.0 0.0 29710.0 0.0 22297.0 g 0 0 0 0 47538.0 44394.0 72543.0 657.0 57092.0 0.0 72543.0 0.0 72543.0 10582.0 t 0 0 0 0 10588.0 72543.0 1593.0 3520.0 1765.0 1566.0 0.0 72543.0 0.0 2810.0

MA0006.1_rc_shift7 (Ahr::Arnt_rc)
; oligos_6nt_mkv3_m24 versus MA0006.1_rc (Ahr::Arnt_rc); m=7/14; ncol2=6; w=6; offset=4; strand=R; shift=7; score=0.550448; -------CACGCr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 c 0 0 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0

MA0259.1_rc_shift6 (ARNT::HIF1A_rc)
; oligos_6nt_mkv3_m24 versus MA0259.1_rc (ARNT::HIF1A_rc); m=8/14; ncol2=8; w=7; offset=3; strand=R; shift=6; score=0.53678; ------gCACGTvb ; cor=; Ncor= a 0 0 0 0 0 0 15.0 0.0 104.0 0.0 1.0 1.0 31.0 0.0 c 0 0 0 0 0 0 20.0 104.0 0.0 104.0 0.0 23.0 34.0 49.0 g 0 0 0 0 0 0 51.0 0.0 0.0 0.0 103.0 2.0 29.0 28.0 t 0 0 0 0 0 0 18.0 0.0 0.0 0.0 0.0 78.0 10.0 27.0

MA0162.4_shift0 (EGR1)
; oligos_6nt_mkv3_m24 versus MA0162.4 (EGR1); m=9/14; ncol2=14; w=10; offset=-3; strand=D; shift=0; score=0.512469; ccmCGCCCACgCms ; cor=; Ncor= a 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 c 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 g 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 t 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0

MA1560.1_shift5 (SOHLH2)
; oligos_6nt_mkv3_m24 versus MA1560.1 (SOHLH2); m=10/14; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.507522; -----ygCACGTGc ; cor=; Ncor= a 0 0 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 c 0 0 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 g 0 0 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 t 0 0 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0

MA0004.1_rc_shift7 (Arnt_rc)
; oligos_6nt_mkv3_m24 versus MA0004.1_rc (Arnt_rc); m=11/14; ncol2=6; w=6; offset=4; strand=R; shift=7; score=0.497017; -------CACGTG- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 20.0 0.0 0.0 0.0 0.0 0 c 0 0 0 0 0 0 0 20.0 0.0 20.0 0.0 1.0 0.0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 20.0 0.0 16.0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 19.0 4.0 0

MA1099.2_rc_shift5 (HES1_rc)
; oligos_6nt_mkv3_m24 versus MA1099.2_rc (HES1_rc); m=12/14; ncol2=10; w=8; offset=2; strand=R; shift=5; score=0.488813; -----gvCACGyGc ; cor=; Ncor= a 0 0 0 0 0 3216.0 4837.0 53.0 18526.0 0.0 791.0 232.0 18.0 8007.0 c 0 0 0 0 0 6013.0 6360.0 18526.0 0.0 18526.0 0.0 9081.0 0.0 18526.0 g 0 0 0 0 0 12513.0 6203.0 0.0 4057.0 0.0 18526.0 0.0 18526.0 2072.0 t 0 0 0 0 0 2742.0 1126.0 1.0 253.0 21.0 0.0 9446.0 464.0 5858.0

MA0622.1_shift6 (Mlxip)
; oligos_6nt_mkv3_m24 versus MA0622.1 (Mlxip); m=13/14; ncol2=8; w=7; offset=3; strand=D; shift=6; score=0.476793; ------bCACGTGk ; cor=; Ncor= a 0 0 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 c 0 0 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 g 0 0 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 t 0 0 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0

MA0616.2_rc_shift5 (HES2_rc)
; oligos_6nt_mkv3_m24 versus MA0616.2_rc (HES2_rc); m=14/14; ncol2=10; w=8; offset=2; strand=R; shift=5; score=0.475829; -----grCACGTGc ; cor=; Ncor= a 0 0 0 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 c 0 0 0 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 g 0 0 0 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 t 0 0 0 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m24_shift3 (oligos_6nt_mkv3_m24oligos_6nt_mkv3_m24)				; oligos_6nt_mkv3_m24 (oligos_6nt_mkv3_m24oligos_6nt_mkv3_m24); m=0 (reference); ncol1=10; shift=3; ncol=14; ---sgCGCACGss- ; Alignment reference a 0 0 0 14 31 0 0 4 132 0 0 16 31 0 c 0 0 0 94 42 180 0 157 6 180 0 91 49 0 g 0 0 0 50 94 0 180 3 40 0 180 46 87 0 t 0 0 0 22 13 0 0 16 2 0 0 27 13 0
MA0506.1_rc_shift3 (NRF1_rc)				; oligos_6nt_mkv3_m24 versus MA0506.1_rc (NRF1_rc); m=1/14; ncol2=11; w=10; offset=0; strand=R; shift=3; score=0.715631; ---yGCGCAkGCGC ; cor=; Ncor= a 0 0 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 0.0 c 0 0 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 3647.0 g 0 0 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 375.0 t 0 0 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0 602.0
MA0472.2_shift2 (EGR2)				; oligos_6nt_mkv3_m24 versus MA0472.2 (EGR2); m=2/14; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.640203; --mCGCCCACGCa- ; cor=; Ncor= a 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 c 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 g 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 t 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0
MA1106.1_rc_shift4 (HIF1A_rc)				; oligos_6nt_mkv3_m24 versus MA1106.1_rc (HIF1A_rc); m=3/14; ncol2=10; w=9; offset=1; strand=R; shift=4; score=0.614495; ----ssGCACGTvc ; cor=; Ncor= a 0 0 0 0 230.0 227.0 35.0 11.0 934.0 0.0 1.0 2.0 342.0 140.0 c 0 0 0 0 271.0 257.0 20.0 844.0 11.0 979.0 0.0 2.0 263.0 414.0 g 0 0 0 0 315.0 290.0 837.0 41.0 33.0 0.0 979.0 0.0 270.0 229.0 t 0 0 0 0 164.0 206.0 88.0 84.0 2.0 1.0 0.0 976.0 105.0 197.0
MA0131.2_rc_shift2 (HINFP_rc)				; oligos_6nt_mkv3_m24 versus MA0131.2_rc (HINFP_rc); m=4/14; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.59753; --mcGCGGACGytg ; cor=; Ncor= a 0 0 107.0 97.0 12.0 21.0 3.0 0.0 470.0 10.0 7.0 17.0 53.0 100.0 c 0 0 154.0 188.0 15.0 472.0 0.0 13.0 0.0 484.0 97.0 217.0 113.0 106.0 g 0 0 84.0 55.0 395.0 31.0 413.0 404.0 0.0 14.0 388.0 45.0 131.0 340.0 t 0 0 77.0 85.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 276.0 285.0 23.0
MA1650.1_shift0 (ZBTB14)				; oligos_6nt_mkv3_m24 versus MA1650.1 (ZBTB14); m=5/14; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.58355; ssCCGCGCACss-- ; cor=; Ncor= a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 0 c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 0 g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 0 t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0 0
MA0632.2_rc_shift4 (TCFL5_rc)				; oligos_6nt_mkv3_m24 versus MA0632.2_rc (TCFL5_rc); m=6/14; ncol2=10; w=9; offset=1; strand=R; shift=4; score=0.579735; ----gkGCGCGyGm ; cor=; Ncor= a 0 0 0 0 8670.0 25921.0 635.0 0.0 15451.0 0.0 1643.0 9359.0 0.0 36854.0 c 0 0 0 0 5747.0 19096.0 4594.0 72543.0 0.0 72543.0 0.0 29710.0 0.0 22297.0 g 0 0 0 0 47538.0 44394.0 72543.0 657.0 57092.0 0.0 72543.0 0.0 72543.0 10582.0 t 0 0 0 0 10588.0 72543.0 1593.0 3520.0 1765.0 1566.0 0.0 72543.0 0.0 2810.0
MA0006.1_rc_shift7 (Ahr::Arnt_rc)				; oligos_6nt_mkv3_m24 versus MA0006.1_rc (Ahr::Arnt_rc); m=7/14; ncol2=6; w=6; offset=4; strand=R; shift=7; score=0.550448; -------CACGCr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 c 0 0 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0
MA0259.1_rc_shift6 (ARNT::HIF1A_rc)				; oligos_6nt_mkv3_m24 versus MA0259.1_rc (ARNT::HIF1A_rc); m=8/14; ncol2=8; w=7; offset=3; strand=R; shift=6; score=0.53678; ------gCACGTvb ; cor=; Ncor= a 0 0 0 0 0 0 15.0 0.0 104.0 0.0 1.0 1.0 31.0 0.0 c 0 0 0 0 0 0 20.0 104.0 0.0 104.0 0.0 23.0 34.0 49.0 g 0 0 0 0 0 0 51.0 0.0 0.0 0.0 103.0 2.0 29.0 28.0 t 0 0 0 0 0 0 18.0 0.0 0.0 0.0 0.0 78.0 10.0 27.0
MA0162.4_shift0 (EGR1)				; oligos_6nt_mkv3_m24 versus MA0162.4 (EGR1); m=9/14; ncol2=14; w=10; offset=-3; strand=D; shift=0; score=0.512469; ccmCGCCCACgCms ; cor=; Ncor= a 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 c 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 g 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 t 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0
MA1560.1_shift5 (SOHLH2)				; oligos_6nt_mkv3_m24 versus MA1560.1 (SOHLH2); m=10/14; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.507522; -----ygCACGTGc ; cor=; Ncor= a 0 0 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 c 0 0 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 g 0 0 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 t 0 0 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0
MA0004.1_rc_shift7 (Arnt_rc)				; oligos_6nt_mkv3_m24 versus MA0004.1_rc (Arnt_rc); m=11/14; ncol2=6; w=6; offset=4; strand=R; shift=7; score=0.497017; -------CACGTG- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 20.0 0.0 0.0 0.0 0.0 0 c 0 0 0 0 0 0 0 20.0 0.0 20.0 0.0 1.0 0.0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 20.0 0.0 16.0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 19.0 4.0 0
MA1099.2_rc_shift5 (HES1_rc)				; oligos_6nt_mkv3_m24 versus MA1099.2_rc (HES1_rc); m=12/14; ncol2=10; w=8; offset=2; strand=R; shift=5; score=0.488813; -----gvCACGyGc ; cor=; Ncor= a 0 0 0 0 0 3216.0 4837.0 53.0 18526.0 0.0 791.0 232.0 18.0 8007.0 c 0 0 0 0 0 6013.0 6360.0 18526.0 0.0 18526.0 0.0 9081.0 0.0 18526.0 g 0 0 0 0 0 12513.0 6203.0 0.0 4057.0 0.0 18526.0 0.0 18526.0 2072.0 t 0 0 0 0 0 2742.0 1126.0 1.0 253.0 21.0 0.0 9446.0 464.0 5858.0
MA0622.1_shift6 (Mlxip)				; oligos_6nt_mkv3_m24 versus MA0622.1 (Mlxip); m=13/14; ncol2=8; w=7; offset=3; strand=D; shift=6; score=0.476793; ------bCACGTGk ; cor=; Ncor= a 0 0 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 c 0 0 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 g 0 0 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 t 0 0 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0
MA0616.2_rc_shift5 (HES2_rc)				; oligos_6nt_mkv3_m24 versus MA0616.2_rc (HES2_rc); m=14/14; ncol2=10; w=8; offset=2; strand=R; shift=5; score=0.475829; -----grCACGTGc ; cor=; Ncor= a 0 0 0 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 c 0 0 0 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 g 0 0 0 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 t 0 0 0 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0