Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m25/peak-motifs_oligos_6nt_mkv3_m25_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m25/peak-motifs_oligos_6nt_mkv3_m25.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m25/peak-motifs_oligos_6nt_mkv3_m25_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m25/peak-motifs_oligos_6nt_mkv3_m25.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m25/peak-motifs_oligos_6nt_mkv3_m25_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m25/peak-motifs_oligos_6nt_mkv3_m25_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m25/peak-motifs_oligos_6nt_mkv3_m25_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m25/peak-motifs_oligos_6nt_mkv3_m25_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m25/peak-motifs_oligos_6nt_mkv3_m25_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m25/peak-motifs_oligos_6nt_mkv3_m25_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m25/peak-motifs_oligos_6nt_mkv3_m25.tf
		file1	1	11	265
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m25 MA1638.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 HAND2 0.925 0.841 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv3_m25 MA1109.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 NEUROD1 0.990 0.837 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_6nt_mkv3_m25 MA1642.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 NEUROG2(var.2) 0.986 0.834 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_6nt_mkv3_m25 MA0091.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 TAL1::TCF3 0.813 0.746 11 12 11 12 0.9167 1.0000 0.9167 R 0
oligos_6nt_mkv3_m25 MA0521.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 Tcf12 0.735 0.735 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m25 MA1618.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 Ptf1a 0.864 0.731 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_6nt_mkv3_m25 MA1524.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 MSGN1 0.789 0.723 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_6nt_mkv3_m25 MA1472.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 BHLHA15(var.2) 0.770 0.700 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m25 MA0633.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 Twist2 0.767 0.697 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m25 MA1123.2 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 TWIST1 0.818 0.693 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_6nt_mkv3_m25 MA0461.2 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 Atoh1 0.756 0.688 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv3_m25 MA1568.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 TCF21(var.2) 0.748 0.686 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_6nt_mkv3_m25 MA0668.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 NEUROD2 0.750 0.682 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m25 MA1468.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 ATOH7 0.732 0.665 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m25 MA1570.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 TFAP4(var.2) 0.731 0.665 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv3_m25 MA0820.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 FIGLA 0.728 0.662 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m25 MA1108.2 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 MXI1 0.727 0.661 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv3_m25 MA1100.2 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 ASCL1 0.717 0.652 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv3_m25 MA1635.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 BHLHE22(var.2) 0.716 0.651 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv3_m25 MA0827.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 OLIG3 0.715 0.650 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m25 MA0100.3 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 MYB 0.712 0.647 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m25 MA0818.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 BHLHE22 0.709 0.645 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m25 MA0678.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 OLIG2 0.701 0.638 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m25 MA0623.2 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 NEUROG1 0.700 0.637 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv3_m25 MA0698.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 ZBTB18 0.725 0.613 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_6nt_mkv3_m25 MA0607.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 Bhlha15 0.826 0.601 11 8 8 11 0.7273 0.7273 1.0000 R 1
oligos_6nt_mkv3_m25 MA0103.3 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 ZEB1 0.709 0.591 11 11 10 12 0.8333 0.9091 0.9091 R -1
oligos_6nt_mkv3_m25 MA1485.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 FERD3L 0.725 0.569 11 14 11 14 0.7857 1.0000 0.7857 R -2
oligos_6nt_mkv3_m25 MA0095.2 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 YY1 0.710 0.546 11 12 10 13 0.7692 0.9091 0.8333 D 1
oligos_6nt_mkv3_m25 MA0092.1 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 Hand1::Tcf3 0.729 0.448 11 10 8 13 0.6154 0.7273 0.8000 R -2
oligos_6nt_mkv3_m25 MA0748.2 oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25 YY2 0.751 0.429 11 11 8 14 0.5714 0.7273 0.7273 D 3 
 Host name	pedagogix
 Job started	2020-04-13.224558
 Job done	2020-04-13.224619
 Seconds	2.87
	user	2.87
	system	0.34
	cuser	16.71
;	csystem	1.36