One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m28/peak-motifs_oligos_6nt_mkv3_m28.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m28/peak-motifs_oligos_6nt_mkv3_m28_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m28_shift5 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m28_shift5 (oligos_6nt_mkv3_m28oligos_6nt_mkv3_m28)
; oligos_6nt_mkv3_m28 (oligos_6nt_mkv3_m28oligos_6nt_mkv3_m28); m=0 (reference); ncol1=10; shift=5; ncol=21; -----ssCTTGGChs------ ; Alignment reference a 0 0 0 0 0 96 111 0 0 0 0 0 0 214 94 0 0 0 0 0 0 c 0 0 0 0 0 167 210 624 0 0 0 0 624 184 167 0 0 0 0 0 0 g 0 0 0 0 0 209 192 0 0 0 624 624 0 40 214 0 0 0 0 0 0 t 0 0 0 0 0 152 111 0 624 624 0 0 0 186 149 0 0 0 0 0 0

MA0161.2_shift5 (NFIC)
; oligos_6nt_mkv3_m28 versus MA0161.2 (NFIC); m=1/9; ncol2=11; w=10; offset=0; strand=D; shift=5; score=0.850862; -----twCTTGGCAsa----- ; cor=; Ncor= a 0 0 0 0 0 2615.0 3896.0 412.0 154.0 352.0 310.0 223.0 264.0 10158.0 2626.0 3344.0 0 0 0 0 0 c 0 0 0 0 0 2647.0 2137.0 10542.0 303.0 333.0 129.0 121.0 10725.0 397.0 2951.0 2712.0 0 0 0 0 0 g 0 0 0 0 0 2478.0 2086.0 329.0 369.0 177.0 11087.0 10973.0 88.0 478.0 3186.0 2760.0 0 0 0 0 0 t 0 0 0 0 0 3867.0 3488.0 324.0 10781.0 10745.0 81.0 290.0 530.0 574.0 2844.0 2791.0 0 0 0 0 0

MA0670.1_rc_shift6 (NFIA_rc)
; oligos_6nt_mkv3_m28 versus MA0670.1_rc (NFIA_rc); m=2/9; ncol2=10; w=9; offset=1; strand=R; shift=6; score=0.694397; ------wyTTGGCAcc----- ; cor=; Ncor= a 0 0 0 0 0 0 32052.0 17410.0 0.0 0.0 0.0 0.0 0.0 95496.0 23019.0 22282.0 0 0 0 0 0 c 0 0 0 0 0 0 16505.0 29423.0 0.0 0.0 0.0 0.0 98253.0 0.0 35089.0 24321.0 0 0 0 0 0 g 0 0 0 0 0 0 14439.0 21852.0 0.0 0.0 93394.0 93597.0 0.0 0.0 14274.0 22347.0 0 0 0 0 0 t 0 0 0 0 0 0 27709.0 23752.0 89418.0 89071.0 0.0 0.0 0.0 0.0 20706.0 22969.0 0 0 0 0 0

MA0671.1_rc_shift7 (NFIX_rc)
; oligos_6nt_mkv3_m28 versus MA0671.1_rc (NFIX_rc); m=3/9; ncol2=9; w=8; offset=2; strand=R; shift=7; score=0.640024; -------byTGGCacs----- ; cor=; Ncor= a 0 0 0 0 0 0 0 6439.0 2399.0 110.0 0.0 29.0 2539.0 32864.0 8043.0 7378.0 0 0 0 0 0 c 0 0 0 0 0 0 0 9135.0 12688.0 180.0 0.0 3257.0 32864.0 5911.0 10855.0 8725.0 0 0 0 0 0 g 0 0 0 0 0 0 0 9039.0 1356.0 2230.0 32864.0 32864.0 186.0 9695.0 6134.0 8810.0 0 0 0 0 0 t 0 0 0 0 0 0 0 8251.0 32864.0 32864.0 0.0 3.0 132.0 11279.0 7832.0 7951.0 0 0 0 0 0

MA0739.1_rc_shift6 (Hic1_rc)
; oligos_6nt_mkv3_m28 versus MA0739.1_rc (Hic1_rc); m=4/9; ncol2=9; w=9; offset=1; strand=R; shift=6; score=0.634356; ------gGtTGGCAy------ ; cor=; Ncor= a 0 0 0 0 0 0 2692.0 1488.0 614.0 317.0 68.0 0.0 183.0 11007.0 666.0 0 0 0 0 0 0 c 0 0 0 0 0 0 1884.0 1629.0 2267.0 3.0 31.0 121.0 11007.0 73.0 4670.0 0 0 0 0 0 0 g 0 0 0 0 0 0 4822.0 11007.0 1986.0 1999.0 11007.0 11007.0 588.0 422.0 719.0 0 0 0 0 0 0 t 0 0 0 0 0 0 1610.0 1220.0 6140.0 9008.0 88.0 50.0 950.0 62.0 6337.0 0 0 0 0 0 0

MA0502.2_shift4 (NFYB)
; oligos_6nt_mkv3_m28 versus MA0502.2 (NFYB); m=5/9; ncol2=12; w=10; offset=-1; strand=D; shift=4; score=0.596895; ----cyCATTGGCCar----- ; cor=; Ncor= a 0 0 0 0 813.0 438.0 193.0 6983.0 134.0 84.0 53.0 63.0 154.0 154.0 3121.0 2317.0 0 0 0 0 0 c 0 0 0 0 3803.0 2705.0 5447.0 181.0 241.0 37.0 41.0 58.0 6488.0 5823.0 1670.0 1489.0 0 0 0 0 0 g 0 0 0 0 1421.0 901.0 1481.0 57.0 227.0 102.0 7250.0 7272.0 173.0 139.0 1635.0 2663.0 0 0 0 0 0 t 0 0 0 0 1417.0 3410.0 333.0 233.0 6852.0 7231.0 110.0 61.0 639.0 1338.0 1028.0 985.0 0 0 0 0 0

MA1599.1_rc_shift0 (ZNF682_rc)
; oligos_6nt_mkv3_m28 versus MA1599.1_rc (ZNF682_rc); m=6/9; ncol2=16; w=10; offset=-5; strand=R; shift=0; score=0.496466; aywGGGGCTTrGCCyg----- ; cor=; Ncor= a 412.0 180.0 456.0 64.0 7.0 11.0 33.0 7.0 6.0 13.0 358.0 58.0 36.0 89.0 171.0 216.0 0 0 0 0 0 c 194.0 300.0 118.0 32.0 10.0 9.0 13.0 1038.0 22.0 20.0 55.0 105.0 877.0 774.0 349.0 214.0 0 0 0 0 0 g 260.0 254.0 117.0 896.0 1034.0 1033.0 999.0 7.0 31.0 72.0 597.0 795.0 42.0 85.0 234.0 423.0 0 0 0 0 0 t 192.0 324.0 367.0 66.0 7.0 5.0 13.0 6.0 999.0 953.0 48.0 100.0 103.0 110.0 304.0 205.0 0 0 0 0 0

MA1540.1_rc_shift2 (NR5A1_rc)
; oligos_6nt_mkv3_m28 versus MA1540.1_rc (NR5A1_rc); m=7/9; ncol2=11; w=8; offset=-3; strand=R; shift=2; score=0.443243; --ryGrCCTTGrm-------- ; cor=; Ncor= a 0 0 1126.0 287.0 651.0 4118.0 0.0 86.0 143.0 4.0 135.0 2428.0 1093.0 0 0 0 0 0 0 0 0 c 0 0 820.0 1684.0 218.0 381.0 4118.0 4118.0 137.0 287.0 716.0 902.0 1268.0 0 0 0 0 0 0 0 0 g 0 0 1323.0 242.0 4118.0 2021.0 0.0 0.0 128.0 0.0 4118.0 1690.0 991.0 0 0 0 0 0 0 0 0 t 0 0 849.0 4118.0 70.0 951.0 0.0 0.0 4118.0 4118.0 84.0 906.0 767.0 0 0 0 0 0 0 0 0

MA1643.1_rc_shift5 (NFIB_rc)
; oligos_6nt_mkv3_m28 versus MA1643.1_rc (NFIB_rc); m=8/9; ncol2=21; w=10; offset=0; strand=R; shift=5; score=0.434288; -----tdctTGGCAcmrTGCC ; cor=; Ncor= a 0 0 0 0 0 1050.0 1193.0 428.0 211.0 70.0 15.0 20.0 180.0 3083.0 468.0 1388.0 2175.0 544.0 18.0 16.0 11.0 c 0 0 0 0 0 984.0 874.0 2969.0 1055.0 36.0 11.0 23.0 4191.0 451.0 2822.0 1149.0 608.0 175.0 27.0 4372.0 4389.0 g 0 0 0 0 0 1015.0 1193.0 467.0 161.0 373.0 4382.0 4357.0 31.0 181.0 532.0 792.0 1190.0 519.0 4223.0 12.0 11.0 t 0 0 0 0 0 1367.0 1156.0 552.0 2989.0 3937.0 8.0 16.0 14.0 701.0 594.0 1087.0 443.0 3178.0 148.0 16.0 5.0

MA0119.1_rc_shift8 (NFIC::TLX1_rc)
; oligos_6nt_mkv3_m28 versus MA0119.1_rc (NFIC::TLX1_rc); m=9/9; ncol2=14; w=7; offset=3; strand=R; shift=8; score=0.400821; --------TTGGCwyssTGCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 7.0 3.0 2.0 1.0 1.0 0.0 0.0 0.0 c 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 16.0 2.0 5.0 4.0 5.0 0.0 0.0 16.0 16.0 g 0 0 0 0 0 0 0 0 0.0 0.0 16.0 16.0 0.0 3.0 1.0 8.0 8.0 1.0 16.0 0.0 0.0 t 0 0 0 0 0 0 0 0 14.0 16.0 0.0 0.0 0.0 4.0 7.0 2.0 2.0 14.0 0.0 0.0 0.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m28_shift5 (oligos_6nt_mkv3_m28oligos_6nt_mkv3_m28)				; oligos_6nt_mkv3_m28 (oligos_6nt_mkv3_m28oligos_6nt_mkv3_m28); m=0 (reference); ncol1=10; shift=5; ncol=21; -----ssCTTGGChs------ ; Alignment reference a 0 0 0 0 0 96 111 0 0 0 0 0 0 214 94 0 0 0 0 0 0 c 0 0 0 0 0 167 210 624 0 0 0 0 624 184 167 0 0 0 0 0 0 g 0 0 0 0 0 209 192 0 0 0 624 624 0 40 214 0 0 0 0 0 0 t 0 0 0 0 0 152 111 0 624 624 0 0 0 186 149 0 0 0 0 0 0
MA0161.2_shift5 (NFIC)				; oligos_6nt_mkv3_m28 versus MA0161.2 (NFIC); m=1/9; ncol2=11; w=10; offset=0; strand=D; shift=5; score=0.850862; -----twCTTGGCAsa----- ; cor=; Ncor= a 0 0 0 0 0 2615.0 3896.0 412.0 154.0 352.0 310.0 223.0 264.0 10158.0 2626.0 3344.0 0 0 0 0 0 c 0 0 0 0 0 2647.0 2137.0 10542.0 303.0 333.0 129.0 121.0 10725.0 397.0 2951.0 2712.0 0 0 0 0 0 g 0 0 0 0 0 2478.0 2086.0 329.0 369.0 177.0 11087.0 10973.0 88.0 478.0 3186.0 2760.0 0 0 0 0 0 t 0 0 0 0 0 3867.0 3488.0 324.0 10781.0 10745.0 81.0 290.0 530.0 574.0 2844.0 2791.0 0 0 0 0 0
MA0670.1_rc_shift6 (NFIA_rc)				; oligos_6nt_mkv3_m28 versus MA0670.1_rc (NFIA_rc); m=2/9; ncol2=10; w=9; offset=1; strand=R; shift=6; score=0.694397; ------wyTTGGCAcc----- ; cor=; Ncor= a 0 0 0 0 0 0 32052.0 17410.0 0.0 0.0 0.0 0.0 0.0 95496.0 23019.0 22282.0 0 0 0 0 0 c 0 0 0 0 0 0 16505.0 29423.0 0.0 0.0 0.0 0.0 98253.0 0.0 35089.0 24321.0 0 0 0 0 0 g 0 0 0 0 0 0 14439.0 21852.0 0.0 0.0 93394.0 93597.0 0.0 0.0 14274.0 22347.0 0 0 0 0 0 t 0 0 0 0 0 0 27709.0 23752.0 89418.0 89071.0 0.0 0.0 0.0 0.0 20706.0 22969.0 0 0 0 0 0
MA0671.1_rc_shift7 (NFIX_rc)				; oligos_6nt_mkv3_m28 versus MA0671.1_rc (NFIX_rc); m=3/9; ncol2=9; w=8; offset=2; strand=R; shift=7; score=0.640024; -------byTGGCacs----- ; cor=; Ncor= a 0 0 0 0 0 0 0 6439.0 2399.0 110.0 0.0 29.0 2539.0 32864.0 8043.0 7378.0 0 0 0 0 0 c 0 0 0 0 0 0 0 9135.0 12688.0 180.0 0.0 3257.0 32864.0 5911.0 10855.0 8725.0 0 0 0 0 0 g 0 0 0 0 0 0 0 9039.0 1356.0 2230.0 32864.0 32864.0 186.0 9695.0 6134.0 8810.0 0 0 0 0 0 t 0 0 0 0 0 0 0 8251.0 32864.0 32864.0 0.0 3.0 132.0 11279.0 7832.0 7951.0 0 0 0 0 0
MA0739.1_rc_shift6 (Hic1_rc)				; oligos_6nt_mkv3_m28 versus MA0739.1_rc (Hic1_rc); m=4/9; ncol2=9; w=9; offset=1; strand=R; shift=6; score=0.634356; ------gGtTGGCAy------ ; cor=; Ncor= a 0 0 0 0 0 0 2692.0 1488.0 614.0 317.0 68.0 0.0 183.0 11007.0 666.0 0 0 0 0 0 0 c 0 0 0 0 0 0 1884.0 1629.0 2267.0 3.0 31.0 121.0 11007.0 73.0 4670.0 0 0 0 0 0 0 g 0 0 0 0 0 0 4822.0 11007.0 1986.0 1999.0 11007.0 11007.0 588.0 422.0 719.0 0 0 0 0 0 0 t 0 0 0 0 0 0 1610.0 1220.0 6140.0 9008.0 88.0 50.0 950.0 62.0 6337.0 0 0 0 0 0 0
MA0502.2_shift4 (NFYB)				; oligos_6nt_mkv3_m28 versus MA0502.2 (NFYB); m=5/9; ncol2=12; w=10; offset=-1; strand=D; shift=4; score=0.596895; ----cyCATTGGCCar----- ; cor=; Ncor= a 0 0 0 0 813.0 438.0 193.0 6983.0 134.0 84.0 53.0 63.0 154.0 154.0 3121.0 2317.0 0 0 0 0 0 c 0 0 0 0 3803.0 2705.0 5447.0 181.0 241.0 37.0 41.0 58.0 6488.0 5823.0 1670.0 1489.0 0 0 0 0 0 g 0 0 0 0 1421.0 901.0 1481.0 57.0 227.0 102.0 7250.0 7272.0 173.0 139.0 1635.0 2663.0 0 0 0 0 0 t 0 0 0 0 1417.0 3410.0 333.0 233.0 6852.0 7231.0 110.0 61.0 639.0 1338.0 1028.0 985.0 0 0 0 0 0
MA1599.1_rc_shift0 (ZNF682_rc)				; oligos_6nt_mkv3_m28 versus MA1599.1_rc (ZNF682_rc); m=6/9; ncol2=16; w=10; offset=-5; strand=R; shift=0; score=0.496466; aywGGGGCTTrGCCyg----- ; cor=; Ncor= a 412.0 180.0 456.0 64.0 7.0 11.0 33.0 7.0 6.0 13.0 358.0 58.0 36.0 89.0 171.0 216.0 0 0 0 0 0 c 194.0 300.0 118.0 32.0 10.0 9.0 13.0 1038.0 22.0 20.0 55.0 105.0 877.0 774.0 349.0 214.0 0 0 0 0 0 g 260.0 254.0 117.0 896.0 1034.0 1033.0 999.0 7.0 31.0 72.0 597.0 795.0 42.0 85.0 234.0 423.0 0 0 0 0 0 t 192.0 324.0 367.0 66.0 7.0 5.0 13.0 6.0 999.0 953.0 48.0 100.0 103.0 110.0 304.0 205.0 0 0 0 0 0
MA1540.1_rc_shift2 (NR5A1_rc)				; oligos_6nt_mkv3_m28 versus MA1540.1_rc (NR5A1_rc); m=7/9; ncol2=11; w=8; offset=-3; strand=R; shift=2; score=0.443243; --ryGrCCTTGrm-------- ; cor=; Ncor= a 0 0 1126.0 287.0 651.0 4118.0 0.0 86.0 143.0 4.0 135.0 2428.0 1093.0 0 0 0 0 0 0 0 0 c 0 0 820.0 1684.0 218.0 381.0 4118.0 4118.0 137.0 287.0 716.0 902.0 1268.0 0 0 0 0 0 0 0 0 g 0 0 1323.0 242.0 4118.0 2021.0 0.0 0.0 128.0 0.0 4118.0 1690.0 991.0 0 0 0 0 0 0 0 0 t 0 0 849.0 4118.0 70.0 951.0 0.0 0.0 4118.0 4118.0 84.0 906.0 767.0 0 0 0 0 0 0 0 0
MA1643.1_rc_shift5 (NFIB_rc)				; oligos_6nt_mkv3_m28 versus MA1643.1_rc (NFIB_rc); m=8/9; ncol2=21; w=10; offset=0; strand=R; shift=5; score=0.434288; -----tdctTGGCAcmrTGCC ; cor=; Ncor= a 0 0 0 0 0 1050.0 1193.0 428.0 211.0 70.0 15.0 20.0 180.0 3083.0 468.0 1388.0 2175.0 544.0 18.0 16.0 11.0 c 0 0 0 0 0 984.0 874.0 2969.0 1055.0 36.0 11.0 23.0 4191.0 451.0 2822.0 1149.0 608.0 175.0 27.0 4372.0 4389.0 g 0 0 0 0 0 1015.0 1193.0 467.0 161.0 373.0 4382.0 4357.0 31.0 181.0 532.0 792.0 1190.0 519.0 4223.0 12.0 11.0 t 0 0 0 0 0 1367.0 1156.0 552.0 2989.0 3937.0 8.0 16.0 14.0 701.0 594.0 1087.0 443.0 3178.0 148.0 16.0 5.0
MA0119.1_rc_shift8 (NFIC::TLX1_rc)				; oligos_6nt_mkv3_m28 versus MA0119.1_rc (NFIC::TLX1_rc); m=9/9; ncol2=14; w=7; offset=3; strand=R; shift=8; score=0.400821; --------TTGGCwyssTGCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 7.0 3.0 2.0 1.0 1.0 0.0 0.0 0.0 c 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 16.0 2.0 5.0 4.0 5.0 0.0 0.0 16.0 16.0 g 0 0 0 0 0 0 0 0 0.0 0.0 16.0 16.0 0.0 3.0 1.0 8.0 8.0 1.0 16.0 0.0 0.0 t 0 0 0 0 0 0 0 0 14.0 16.0 0.0 0.0 0.0 4.0 7.0 2.0 2.0 14.0 0.0 0.0 0.0