Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m29/peak-motifs_oligos_6nt_mkv3_m29_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m29/peak-motifs_oligos_6nt_mkv3_m29.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m29/peak-motifs_oligos_6nt_mkv3_m29_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m29/peak-motifs_oligos_6nt_mkv3_m29.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m29/peak-motifs_oligos_6nt_mkv3_m29_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m29/peak-motifs_oligos_6nt_mkv3_m29_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m29/peak-motifs_oligos_6nt_mkv3_m29_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m29/peak-motifs_oligos_6nt_mkv3_m29_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m29/peak-motifs_oligos_6nt_mkv3_m29_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m29/peak-motifs_oligos_6nt_mkv3_m29_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m29/peak-motifs_oligos_6nt_mkv3_m29.tf
		file1	1	17	1241
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m29 MA0499.2 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 MYOD1 0.880 0.673 17 13 13 17 0.7647 0.7647 1.0000 R 1
oligos_6nt_mkv3_m29 MA0832.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 Tcf21 0.811 0.668 17 14 14 17 0.8235 0.8235 1.0000 D 1
oligos_6nt_mkv3_m29 MA0500.2 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 MYOG 0.909 0.641 17 12 12 17 0.7059 0.7059 1.0000 R 2
oligos_6nt_mkv3_m29 MA1641.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 MYF5 0.902 0.637 17 12 12 17 0.7059 0.7059 1.0000 D 2
oligos_6nt_mkv3_m29 MA1619.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 Ptf1a(var.2) 0.897 0.633 17 12 12 17 0.7059 0.7059 1.0000 D 2
oligos_6nt_mkv3_m29 MA1485.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 FERD3L 0.767 0.632 17 14 14 17 0.8235 0.8235 1.0000 R 1
oligos_6nt_mkv3_m29 MA0521.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 Tcf12 0.950 0.615 17 11 11 17 0.6471 0.6471 1.0000 D 3
oligos_6nt_mkv3_m29 MA1621.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 Rbpjl 0.745 0.614 17 14 14 17 0.8235 0.8235 1.0000 R 1
oligos_6nt_mkv3_m29 MA0745.2 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 SNAI2 0.780 0.596 17 13 13 17 0.7647 0.7647 1.0000 R 1
oligos_6nt_mkv3_m29 MA1618.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 Ptf1a 0.757 0.579 17 13 13 17 0.7647 0.7647 1.0000 D 2
oligos_6nt_mkv3_m29 MA1631.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 ASCL1(var.2) 0.719 0.550 17 13 13 17 0.7647 0.7647 1.0000 D 2
oligos_6nt_mkv3_m29 MA0830.2 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 TCF4 0.716 0.547 17 13 13 17 0.7647 0.7647 1.0000 R 1
oligos_6nt_mkv3_m29 MA1123.2 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 TWIST1 0.715 0.547 17 13 13 17 0.7647 0.7647 1.0000 R 2
oligos_6nt_mkv3_m29 MA1109.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 NEUROD1 0.704 0.539 17 13 13 17 0.7647 0.7647 1.0000 D 2
oligos_6nt_mkv3_m29 MA1467.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 ATOH1(var.2) 0.907 0.533 17 10 10 17 0.5882 0.5882 1.0000 R 3
oligos_6nt_mkv3_m29 MA1472.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 BHLHA15(var.2) 0.903 0.531 17 10 10 17 0.5882 0.5882 1.0000 R 3
oligos_6nt_mkv3_m29 MA1620.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 Ptf1a(var.3) 0.750 0.529 17 12 12 17 0.7059 0.7059 1.0000 D 2
oligos_6nt_mkv3_m29 MA0816.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 Ascl2 0.897 0.528 17 10 10 17 0.5882 0.5882 1.0000 D 3
oligos_6nt_mkv3_m29 MA1635.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 BHLHE22(var.2) 0.892 0.525 17 10 10 17 0.5882 0.5882 1.0000 D 3
oligos_6nt_mkv3_m29 MA1100.2 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 ASCL1 0.885 0.521 17 10 10 17 0.5882 0.5882 1.0000 R 3
oligos_6nt_mkv3_m29 MA0796.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 TGIF1 0.733 0.518 17 12 12 17 0.7059 0.7059 1.0000 D 2
oligos_6nt_mkv3_m29 MA1571.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 TGIF2LX 0.728 0.514 17 12 12 17 0.7059 0.7059 1.0000 D 2
oligos_6nt_mkv3_m29 MA0797.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 TGIF2 0.718 0.507 17 12 12 17 0.7059 0.7059 1.0000 D 2
oligos_6nt_mkv3_m29 MA1572.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 TGIF2LY 0.712 0.503 17 12 12 17 0.7059 0.7059 1.0000 R 2
oligos_6nt_mkv3_m29 MA0665.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 MSC 0.849 0.499 17 10 10 17 0.5882 0.5882 1.0000 D 3
oligos_6nt_mkv3_m29 MA0691.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 TFAP4 0.836 0.492 17 10 10 17 0.5882 0.5882 1.0000 D 3
oligos_6nt_mkv3_m29 MA0048.2 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 NHLH1 0.823 0.484 17 10 10 17 0.5882 0.5882 1.0000 D 3
oligos_6nt_mkv3_m29 MA1648.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 TCF12(var.2) 0.732 0.473 17 11 11 17 0.6471 0.6471 1.0000 D 3
oligos_6nt_mkv3_m29 MA0667.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 MYF6 0.804 0.473 17 10 10 17 0.5882 0.5882 1.0000 R 3
oligos_6nt_mkv3_m29 MA0522.3 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 TCF3 0.728 0.471 17 11 11 17 0.6471 0.6471 1.0000 D 3
oligos_6nt_mkv3_m29 MA0820.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 FIGLA 0.755 0.444 17 10 10 17 0.5882 0.5882 1.0000 R 3
oligos_6nt_mkv3_m29 MA1559.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 SNAI3 0.732 0.431 17 10 10 17 0.5882 0.5882 1.0000 D 3
oligos_6nt_mkv3_m29 MA0100.3 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 MYB 0.707 0.416 17 10 10 17 0.5882 0.5882 1.0000 R 3
oligos_6nt_mkv3_m29 MA1558.1 oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29 SNAI1 0.702 0.413 17 10 10 17 0.5882 0.5882 1.0000 R 3 
 Host name	pedagogix
 Job started	2020-04-13.224641
 Job done	2020-04-13.224715
 Seconds	4.81
	user	4.81
	system	0.56
	cuser	27.15
;	csystem	1.66