Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m30/peak-motifs_oligos_6nt_mkv3_m30_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m30/peak-motifs_oligos_6nt_mkv3_m30.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m30/peak-motifs_oligos_6nt_mkv3_m30_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m30/peak-motifs_oligos_6nt_mkv3_m30.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m30/peak-motifs_oligos_6nt_mkv3_m30_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m30/peak-motifs_oligos_6nt_mkv3_m30_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m30/peak-motifs_oligos_6nt_mkv3_m30_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m30/peak-motifs_oligos_6nt_mkv3_m30_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m30/peak-motifs_oligos_6nt_mkv3_m30_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m30/peak-motifs_oligos_6nt_mkv3_m30_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m30/peak-motifs_oligos_6nt_mkv3_m30.tf
		file1	1	11	446
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m30 MA0597.1 oligos_6nt_mkv3_m30oligos_6nt_mkv3_m30 THAP1 0.747 0.611 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_6nt_mkv3_m30 MA0738.1 oligos_6nt_mkv3_m30oligos_6nt_mkv3_m30 HIC2 0.719 0.588 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_6nt_mkv3_m30 MA0872.1 oligos_6nt_mkv3_m30oligos_6nt_mkv3_m30 TFAP2A(var.3) 0.798 0.479 11 13 9 15 0.6000 0.8182 0.6923 R -4
oligos_6nt_mkv3_m30 MA0813.1 oligos_6nt_mkv3_m30oligos_6nt_mkv3_m30 TFAP2B(var.3) 0.790 0.474 11 13 9 15 0.6000 0.8182 0.6923 R -4
oligos_6nt_mkv3_m30 MA0815.1 oligos_6nt_mkv3_m30oligos_6nt_mkv3_m30 TFAP2C(var.3) 0.785 0.471 11 13 9 15 0.6000 0.8182 0.6923 R -4
oligos_6nt_mkv3_m30 MA1597.1 oligos_6nt_mkv3_m30oligos_6nt_mkv3_m30 ZNF528 0.723 0.468 11 17 11 17 0.6471 1.0000 0.6471 D 0
oligos_6nt_mkv3_m30 MA0524.2 oligos_6nt_mkv3_m30oligos_6nt_mkv3_m30 TFAP2C 0.702 0.452 11 12 9 14 0.6429 0.8182 0.7500 D -3 
 Host name	pedagogix
 Job started	2020-04-13.224716
 Job done	2020-04-13.224720
 Seconds	0.9
	user	0.9
	system	0.07
	cuser	2.74
;	csystem	0.29