Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33.tf
		file1	1	17	29
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m33 MA1622.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 Smad2::Smad3 0.808 0.666 17 14 14 17 0.8235 0.8235 1.0000 D 3
oligos_6nt_mkv3_m33 MA0489.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 JUN(var.2) 0.755 0.622 17 14 14 17 0.8235 0.8235 1.0000 D 1
oligos_6nt_mkv3_m33 MA1141.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOS::JUND 0.813 0.621 17 13 13 17 0.7647 0.7647 1.0000 R 4
oligos_6nt_mkv3_m33 MA1128.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOSL1::JUN 0.798 0.610 17 13 13 17 0.7647 0.7647 1.0000 D 4
oligos_6nt_mkv3_m33 MA1137.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOSL1::JUNB 0.789 0.603 17 13 13 17 0.7647 0.7647 1.0000 D 4
oligos_6nt_mkv3_m33 MA0477.2 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOSL1 0.786 0.601 17 13 13 17 0.7647 0.7647 1.0000 D 4
oligos_6nt_mkv3_m33 MA1130.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOSL2::JUN 0.839 0.592 17 12 12 17 0.7059 0.7059 1.0000 R 5
oligos_6nt_mkv3_m33 MA0491.2 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 JUND 0.752 0.575 17 13 13 17 0.7647 0.7647 1.0000 D 4
oligos_6nt_mkv3_m33 MA0490.2 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 JUNB 0.748 0.572 17 13 13 17 0.7647 0.7647 1.0000 D 4
oligos_6nt_mkv3_m33 MA1134.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOS::JUNB 0.789 0.557 17 12 12 17 0.7059 0.7059 1.0000 R 4
oligos_6nt_mkv3_m33 MA1634.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 BATF 0.843 0.545 17 11 11 17 0.6471 0.6471 1.0000 D 5
oligos_6nt_mkv3_m33 MA0462.2 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 BATF::JUN 0.840 0.544 17 11 11 17 0.6471 0.6471 1.0000 D 5
oligos_6nt_mkv3_m33 MA0835.2 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 BATF3 0.835 0.540 17 11 11 17 0.6471 0.6471 1.0000 D 5
oligos_6nt_mkv3_m33 MA0478.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOSL2 0.824 0.533 17 11 11 17 0.6471 0.6471 1.0000 R 6
oligos_6nt_mkv3_m33 MA0476.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOS 0.819 0.530 17 11 11 17 0.6471 0.6471 1.0000 D 5
oligos_6nt_mkv3_m33 MA1633.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 BACH1 0.755 0.503 17 13 12 18 0.6667 0.7059 0.9231 D 5
oligos_6nt_mkv3_m33 MA0099.3 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOS::JUN 0.831 0.489 17 10 10 17 0.5882 0.5882 1.0000 R 5
oligos_6nt_mkv3_m33 MA1142.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOSL1::JUND 0.826 0.486 17 10 10 17 0.5882 0.5882 1.0000 D 5
oligos_6nt_mkv3_m33 MA1135.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOSB::JUNB 0.813 0.478 17 10 10 17 0.5882 0.5882 1.0000 D 5
oligos_6nt_mkv3_m33 MA1138.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOSL2::JUNB 0.812 0.478 17 10 10 17 0.5882 0.5882 1.0000 D 5
oligos_6nt_mkv3_m33 MA1144.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 FOSL2::JUND 0.811 0.477 17 10 10 17 0.5882 0.5882 1.0000 D 5
oligos_6nt_mkv3_m33 MA0841.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 NFE2 0.736 0.476 17 11 11 17 0.6471 0.6471 1.0000 D 5
oligos_6nt_mkv3_m33 MA1132.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 JUN::JUNB 0.798 0.469 17 10 10 17 0.5882 0.5882 1.0000 D 5
oligos_6nt_mkv3_m33 MA0655.1 oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33 JDP2 0.785 0.415 17 9 9 17 0.5294 0.5294 1.0000 D 6 
 Host name	pedagogix
 Job started	2020-04-13.224728
 Job done	2020-04-13.224757
 Seconds	4.55
	user	4.55
	system	0.56
	cuser	23.03
;	csystem	1.3