One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m33/peak-motifs_oligos_6nt_mkv3_m33_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m33_shift0 ; 25 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv3_m33_shift0 (oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33)     
; oligos_6nt_mkv3_m33 (oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33); m=0 (reference); ncol1=17; shift=0; ncol=18; ksktCAGTGACTCACmg-
; Alignment reference
a	4	6	0	3	2	23	0	0	0	27	0	2	2	29	1	9	5	0
c	6	10	3	5	24	1	2	0	1	0	28	0	26	0	21	11	6	0
g	10	9	10	7	2	1	27	0	28	2	1	1	0	0	3	4	14	0
t	9	4	16	14	1	4	0	29	0	0	0	26	1	0	4	5	4	0
MA1622.1_shift3 (Smad2::Smad3) 
; oligos_6nt_mkv3_m33 versus MA1622.1 (Smad2::Smad3); m=1/24; ncol2=14; w=14; offset=3; strand=D; shift=3; score=0.665682; ---rtkrTGACTCAtwm-
; cor=; Ncor=
a	0	0	0	2995.0	2508.0	2499.0	4451.0	79.0	90.0	10141.0	627.0	247.0	711.0	10056.0	683.0	2948.0	2746.0	0
c	0	0	0	2254.0	2515.0	1642.0	2212.0	59.0	82.0	44.0	7480.0	53.0	9443.0	85.0	2047.0	2479.0	2595.0	0
g	0	0	0	2615.0	2324.0	3479.0	2888.0	56.0	9768.0	58.0	1542.0	68.0	90.0	79.0	1979.0	2154.0	2524.0	0
t	0	0	0	2481.0	2998.0	2725.0	794.0	10151.0	405.0	102.0	696.0	9977.0	101.0	125.0	5636.0	2764.0	2480.0	0
MA0489.1_shift1 (JUN(var.2)) 
; oligos_6nt_mkv3_m33 versus MA0489.1 (JUN(var.2)); m=2/24; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.621954; -rrrrrrTGAsTCAt---
; cor=; Ncor=
a	0	4852.0	3927.0	3726.0	4396.0	4146.0	5930.0	0.0	0.0	10953.0	382.0	199.0	956.0	10956.0	376.0	0	0	0
c	0	1250.0	1324.0	1127.0	1122.0	593.0	993.0	0.0	0.0	0.0	5704.0	0.0	10000.0	0.0	2509.0	0	0	0
g	0	2818.0	4110.0	4330.0	3461.0	4213.0	4033.0	0.0	10956.0	0.0	4090.0	0.0	0.0	0.0	2645.0	0	0	0
t	0	2036.0	1595.0	1773.0	1977.0	2004.0	0.0	10956.0	0.0	3.0	780.0	10757.0	0.0	0.0	5426.0	0	0	0
MA1141.1_rc_shift4 (FOS::JUND_rc) 
; oligos_6nt_mkv3_m33 versus MA1141.1_rc (FOS::JUND_rc); m=3/24; ncol2=13; w=13; offset=4; strand=R; shift=4; score=0.621379; ----bkrTGACTCAymm-
; cor=; Ncor=
a	0	0	0	0	180.0	185.0	612.0	0.0	0.0	999.0	19.0	15.0	129.0	999.0	38.0	263.0	258.0	0
c	0	0	0	0	292.0	195.0	77.0	0.0	0.0	0.0	867.0	0.0	871.0	0.0	266.0	389.0	315.0	0
g	0	0	0	0	264.0	370.0	290.0	0.0	970.0	0.0	40.0	91.0	0.0	1.0	104.0	167.0	244.0	0
t	0	0	0	0	264.0	250.0	21.0	999.0	29.0	0.0	75.0	894.0	0.0	0.0	593.0	182.0	183.0	0
MA1128.1_shift4 (FOSL1::JUN) 
; oligos_6nt_mkv3_m33 versus MA1128.1 (FOSL1::JUN); m=4/24; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.610349; ----kkrTGACTCAtmm-
; cor=; Ncor=
a	0	0	0	0	208.0	172.0	602.0	1.0	3.0	994.0	26.0	33.0	159.0	984.0	57.0	296.0	277.0	0
c	0	0	0	0	246.0	159.0	89.0	2.0	2.0	2.0	826.0	2.0	835.0	4.0	245.0	308.0	289.0	0
g	0	0	0	0	253.0	380.0	283.0	1.0	957.0	2.0	51.0	140.0	2.0	9.0	119.0	173.0	237.0	0
t	0	0	0	0	293.0	289.0	26.0	996.0	38.0	3.0	97.0	826.0	4.0	4.0	579.0	223.0	196.0	0
MA1137.1_shift4 (FOSL1::JUNB) 
; oligos_6nt_mkv3_m33 versus MA1137.1 (FOSL1::JUNB); m=5/24; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.603356; ----ykrTGAcTMAtmc-
; cor=; Ncor=
a	0	0	0	0	237.0	216.0	566.0	23.0	36.0	917.0	63.0	59.0	271.0	904.0	53.0	300.0	247.0	0
c	0	0	0	0	269.0	146.0	100.0	16.0	21.0	20.0	626.0	23.0	683.0	21.0	225.0	298.0	300.0	0
g	0	0	0	0	195.0	376.0	287.0	16.0	880.0	21.0	198.0	115.0	9.0	38.0	170.0	204.0	223.0	0
t	0	0	0	0	300.0	263.0	47.0	945.0	63.0	42.0	113.0	803.0	37.0	37.0	552.0	198.0	230.0	0
MA0477.2_shift4 (FOSL1) 
; oligos_6nt_mkv3_m33 versus MA0477.2 (FOSL1); m=6/24; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.600963; ----draTGACTCAthy-
; cor=; Ncor=
a	0	0	0	0	14979.0	15921.0	35056.0	260.0	515.0	56806.0	2557.0	1060.0	3133.0	56408.0	2716.0	14671.0	13956.0	0
c	0	0	0	0	12491.0	11018.0	6703.0	460.0	301.0	287.0	43918.0	163.0	53711.0	344.0	10399.0	15640.0	17637.0	0
g	0	0	0	0	14848.0	16855.0	13127.0	183.0	54619.0	286.0	8615.0	598.0	278.0	566.0	6533.0	12314.0	11065.0	0
t	0	0	0	0	15363.0	13887.0	2795.0	56778.0	2246.0	302.0	2591.0	55860.0	559.0	363.0	38033.0	15056.0	15023.0	0
MA1130.1_rc_shift5 (FOSL2::JUN_rc) 
; oligos_6nt_mkv3_m33 versus MA1130.1_rc (FOSL2::JUN_rc); m=7/24; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.592381; -----krTGACTCAymm-
; cor=; Ncor=
a	0	0	0	0	0	209.0	589.0	1.0	1.0	998.0	58.0	29.0	158.0	998.0	55.0	269.0	268.0	0
c	0	0	0	0	0	180.0	93.0	1.0	1.0	1.0	698.0	1.0	840.0	1.0	282.0	338.0	295.0	0
g	0	0	0	0	0	341.0	299.0	0.0	979.0	1.0	141.0	123.0	1.0	1.0	121.0	179.0	248.0	0
t	0	0	0	0	0	269.0	19.0	998.0	20.0	1.0	103.0	847.0	1.0	1.0	542.0	214.0	189.0	0
MA0491.2_shift4 (JUND) 
; oligos_6nt_mkv3_m33 versus MA0491.2 (JUND); m=8/24; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.575128; ----wraTGACTCAThh-
; cor=; Ncor=
a	0	0	0	0	28467.0	29234.0	70166.0	644.0	1365.0	103797.0	4634.0	2053.0	4915.0	103420.0	2796.0	27969.0	28212.0	0
c	0	0	0	0	21965.0	19712.0	10173.0	757.0	873.0	650.0	76028.0	496.0	98628.0	751.0	12025.0	28250.0	29793.0	0
g	0	0	0	0	25006.0	31347.0	20586.0	443.0	99787.0	573.0	20633.0	1147.0	953.0	965.0	7908.0	22249.0	19236.0	0
t	0	0	0	0	30507.0	25652.0	5020.0	104101.0	3920.0	925.0	4650.0	102249.0	1449.0	809.0	83216.0	27477.0	28704.0	0
MA0490.2_shift4 (JUNB) 
; oligos_6nt_mkv3_m33 versus MA0490.2 (JUNB); m=9/24; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.572081; ----wdATGACTCATwh-
; cor=; Ncor=
a	0	0	0	0	22772.0	23561.0	56607.0	538.0	770.0	78101.0	4755.0	1999.0	5243.0	77675.0	3722.0	21544.0	21137.0	0
c	0	0	0	0	16583.0	15807.0	7817.0	654.0	550.0	523.0	59784.0	289.0	73199.0	588.0	8876.0	19230.0	20653.0	0
g	0	0	0	0	18150.0	20403.0	11566.0	322.0	74757.0	550.0	10519.0	913.0	617.0	900.0	7508.0	16491.0	15068.0	0
t	0	0	0	0	22351.0	20085.0	3866.0	78342.0	3779.0	682.0	4798.0	76655.0	797.0	693.0	59750.0	22591.0	22998.0	0
MA1134.1_rc_shift4 (FOS::JUNB_rc) 
; oligos_6nt_mkv3_m33 versus MA1134.1_rc (FOS::JUNB_rc); m=10/24; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.557127; ----bkrTGAsTCAym--
; cor=; Ncor=
a	0	0	0	0	156.0	184.0	658.0	1.0	1.0	996.0	25.0	4.0	131.0	998.0	36.0	286.0	0	0
c	0	0	0	0	256.0	178.0	51.0	1.0	1.0	3.0	618.0	1.0	868.0	1.0	267.0	372.0	0	0
g	0	0	0	0	304.0	363.0	284.0	1.0	971.0	1.0	309.0	30.0	1.0	1.0	105.0	168.0	0	0
t	0	0	0	0	283.0	275.0	7.0	998.0	27.0	1.0	48.0	965.0	1.0	1.0	593.0	174.0	0	0
MA1634.1_shift5 (BATF) 
; oligos_6nt_mkv3_m33 versus MA1634.1 (BATF); m=11/24; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.54537; -----waTGACTCAth--
; cor=; Ncor=
a	0	0	0	0	0	13555.0	22575.0	483.0	1139.0	45946.0	2051.0	1130.0	4742.0	45316.0	8146.0	16139.0	0	0
c	0	0	0	0	0	5742.0	8931.0	355.0	570.0	250.0	37333.0	306.0	40279.0	431.0	7566.0	12048.0	0	0
g	0	0	0	0	0	11492.0	8627.0	283.0	40617.0	341.0	5573.0	836.0	711.0	507.0	9681.0	5919.0	0	0
t	0	0	0	0	0	16219.0	6875.0	45887.0	4682.0	471.0	2051.0	44736.0	1276.0	754.0	21615.0	12902.0	0	0
MA0462.2_shift5 (BATF::JUN) 
; oligos_6nt_mkv3_m33 versus MA0462.2 (BATF::JUN); m=12/24; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.543845; -----waTGACTCAth--
; cor=; Ncor=
a	0	0	0	0	0	10765.0	18789.0	367.0	834.0	37280.0	1399.0	755.0	3955.0	36854.0	6299.0	13407.0	0	0
c	0	0	0	0	0	4762.0	7260.0	275.0	400.0	204.0	31168.0	241.0	32770.0	318.0	6105.0	9668.0	0	0
g	0	0	0	0	0	9317.0	6729.0	182.0	33135.0	350.0	4188.0	539.0	522.0	424.0	7745.0	4923.0	0	0
t	0	0	0	0	0	13310.0	5376.0	37330.0	3785.0	320.0	1399.0	36619.0	907.0	558.0	18005.0	10156.0	0	0
MA0835.2_shift5 (BATF3) 
; oligos_6nt_mkv3_m33 versus MA0835.2 (BATF3); m=13/24; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.540073; -----waTGACTCAtw--
; cor=; Ncor=
a	0	0	0	0	0	3609.0	6137.0	132.0	245.0	11670.0	408.0	267.0	1248.0	11529.0	2334.0	4521.0	0	0
c	0	0	0	0	0	1245.0	2106.0	59.0	62.0	92.0	10589.0	79.0	10347.0	84.0	1664.0	2733.0	0	0
g	0	0	0	0	0	2608.0	1831.0	37.0	10420.0	87.0	560.0	117.0	88.0	117.0	2249.0	1255.0	0	0
t	0	0	0	0	0	4503.0	1891.0	11737.0	1238.0	116.0	408.0	11502.0	282.0	235.0	5718.0	3456.0	0	0
MA0478.1_rc_shift6 (FOSL2_rc) 
; oligos_6nt_mkv3_m33 versus MA0478.1_rc (FOSL2_rc); m=14/24; ncol2=11; w=11; offset=6; strand=R; shift=6; score=0.533227; ------vTGAsTCAyym-
; cor=; Ncor=
a	0	0	0	0	0	0	1986.0	0.0	0.0	5318.0	194.0	0.0	0.0	5318.0	74.0	494.0	1405.0	0
c	0	0	0	0	0	0	1933.0	0.0	0.0	0.0	1838.0	192.0	5318.0	0.0	2328.0	2707.0	2086.0	0
g	0	0	0	0	0	0	1399.0	0.0	5113.0	0.0	3286.0	51.0	0.0	0.0	55.0	592.0	994.0	0
t	0	0	0	0	0	0	0.0	5318.0	205.0	0.0	0.0	5075.0	0.0	0.0	2861.0	1525.0	833.0	0
MA0476.1_shift5 (FOS) 
; oligos_6nt_mkv3_m33 versus MA0476.1 (FOS); m=15/24; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.529952; -----dvTGAsTCATb--
; cor=; Ncor=
a	0	0	0	0	0	7879.0	7475.0	0.0	0.0	29396.0	998.0	0.0	0.0	29396.0	258.0	4006.0	0	0
c	0	0	0	0	0	712.0	10177.0	0.0	0.0	0.0	14079.0	0.0	29396.0	0.0	5823.0	8236.0	0	0
g	0	0	0	0	0	9686.0	10841.0	0.0	27108.0	0.0	11206.0	0.0	0.0	0.0	1538.0	7897.0	0	0
t	0	0	0	0	0	11119.0	903.0	29396.0	2288.0	0.0	3113.0	29396.0	0.0	0.0	21777.0	9257.0	0	0
MA1633.1_shift5 (BACH1) 
; oligos_6nt_mkv3_m33 versus MA1633.1 (BACH1); m=16/24; ncol2=13; w=12; offset=5; strand=D; shift=5; score=0.503072; -----saTGACTCAGCaw
; cor=; Ncor=
a	0	0	0	0	0	3257.0	6929.0	105.0	97.0	15046.0	443.0	650.0	576.0	14778.0	339.0	769.0	8799.0	4492.0
c	0	0	0	0	0	3946.0	3833.0	267.0	149.0	230.0	12597.0	220.0	14563.0	194.0	623.0	13382.0	2167.0	3574.0
g	0	0	0	0	0	4835.0	3848.0	149.0	14831.0	167.0	2083.0	266.0	178.0	310.0	13050.0	858.0	1971.0	3553.0
t	0	0	0	0	0	3519.0	947.0	15036.0	480.0	114.0	434.0	14421.0	240.0	275.0	1545.0	548.0	2620.0	3938.0
MA0099.3_rc_shift5 (FOS::JUN_rc) 
; oligos_6nt_mkv3_m33 versus MA0099.3_rc (FOS::JUN_rc); m=17/24; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.488713; -----krTGACTCAy---
; cor=; Ncor=
a	0	0	0	0	0	162.0	568.0	4.0	4.0	991.0	54.0	45.0	168.0	990.0	40.0	0	0	0
c	0	0	0	0	0	164.0	95.0	2.0	3.0	2.0	688.0	4.0	824.0	2.0	257.0	0	0	0
g	0	0	0	0	0	397.0	313.0	2.0	963.0	2.0	180.0	131.0	1.0	5.0	111.0	0	0	0
t	0	0	0	0	0	277.0	24.0	992.0	30.0	5.0	78.0	820.0	7.0	3.0	592.0	0	0	0
MA1142.1_shift5 (FOSL1::JUND) 
; oligos_6nt_mkv3_m33 versus MA1142.1 (FOSL1::JUND); m=18/24; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.485624; -----rrTGActmAt---
; cor=; Ncor=
a	0	0	0	0	0	265.0	551.0	30.0	22.0	864.0	49.0	98.0	270.0	912.0	174.0	0	0	0
c	0	0	0	0	0	221.0	127.0	23.0	61.0	12.0	581.0	45.0	641.0	40.0	212.0	0	0	0
g	0	0	0	0	0	279.0	282.0	34.0	777.0	82.0	191.0	187.0	25.0	17.0	144.0	0	0	0
t	0	0	0	0	0	235.0	40.0	913.0	140.0	41.0	180.0	669.0	64.0	31.0	470.0	0	0	0
MA1135.1_shift5 (FOSB::JUNB) 
; oligos_6nt_mkv3_m33 versus MA1135.1 (FOSB::JUNB); m=19/24; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.478084; -----krTGAsTCAy---
; cor=; Ncor=
a	0	0	0	0	0	119.0	598.0	1.0	1.0	997.0	34.0	2.0	191.0	998.0	37.0	0	0	0
c	0	0	0	0	0	182.0	61.0	0.0	0.0	1.0	596.0	1.0	808.0	0.0	259.0	0	0	0
g	0	0	0	0	0	429.0	321.0	1.0	980.0	1.0	309.0	39.0	1.0	1.0	126.0	0	0	0
t	0	0	0	0	0	270.0	20.0	998.0	19.0	1.0	61.0	958.0	1.0	1.0	578.0	0	0	0
MA1138.1_shift5 (FOSL2::JUNB) 
; oligos_6nt_mkv3_m33 versus MA1138.1 (FOSL2::JUNB); m=20/24; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.477674; -----krTGAsTCAy---
; cor=; Ncor=
a	0	0	0	0	0	151.0	621.0	0.0	0.0	999.0	54.0	1.0	168.0	999.0	35.0	0	0	0
c	0	0	0	0	0	164.0	53.0	0.0	0.0	0.0	568.0	0.0	831.0	0.0	251.0	0	0	0
g	0	0	0	0	0	407.0	314.0	0.0	985.0	0.0	292.0	26.0	0.0	0.0	112.0	0	0	0
t	0	0	0	0	0	277.0	13.0	999.0	14.0	0.0	85.0	973.0	0.0	0.0	602.0	0	0	0
MA1144.1_shift5 (FOSL2::JUND) 
; oligos_6nt_mkv3_m33 versus MA1144.1 (FOSL2::JUND); m=21/24; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.477047; -----krTGAsTCAy---
; cor=; Ncor=
a	0	0	0	0	0	137.0	634.0	0.0	0.0	998.0	46.0	6.0	140.0	999.0	38.0	0	0	0
c	0	0	0	0	0	143.0	60.0	0.0	0.0	1.0	604.0	0.0	860.0	0.0	266.0	0	0	0
g	0	0	0	0	0	446.0	291.0	0.0	990.0	0.0	292.0	60.0	0.0	0.0	113.0	0	0	0
t	0	0	0	0	0	275.0	14.0	999.0	10.0	0.0	58.0	934.0	0.0	0.0	583.0	0	0	0
MA0841.1_shift5 (NFE2) 
; oligos_6nt_mkv3_m33 versus MA0841.1 (NFE2); m=22/24; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.476045; -----vATGACTCATs--
; cor=; Ncor=
a	0	0	0	0	0	5589.0	18831.0	2.0	0.0	18831.0	37.0	0.0	1.0	18831.0	0.0	487.0	0	0
c	0	0	0	0	0	7208.0	9.0	8.0	0.0	11.0	14360.0	20.0	18831.0	13.0	2689.0	9860.0	0	0
g	0	0	0	0	0	5303.0	1306.0	0.0	18831.0	0.0	4472.0	3.0	0.0	8.0	10.0	5067.0	0	0
t	0	0	0	0	0	731.0	5.0	18831.0	2.0	4.0	17.0	18831.0	3.0	5.0	18831.0	3417.0	0	0
MA1132.1_shift5 (JUN::JUNB) 
; oligos_6nt_mkv3_m33 versus MA1132.1 (JUN::JUNB); m=23/24; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.469471; -----kaTGACkCAt---
; cor=; Ncor=
a	0	0	0	0	0	203.0	627.0	11.0	10.0	944.0	27.0	58.0	161.0	931.0	188.0	0	0	0
c	0	0	0	0	0	128.0	134.0	10.0	21.0	10.0	826.0	24.0	707.0	24.0	248.0	0	0	0
g	0	0	0	0	0	408.0	189.0	34.0	921.0	28.0	115.0	353.0	10.0	18.0	64.0	0	0	0
t	0	0	0	0	0	261.0	50.0	946.0	47.0	18.0	33.0	565.0	122.0	27.0	500.0	0	0	0
MA0655.1_shift6 (JDP2) 
; oligos_6nt_mkv3_m33 versus MA0655.1 (JDP2); m=24/24; ncol2=9; w=9; offset=6; strand=D; shift=6; score=0.415498; ------ATGASTCAT---
; cor=; Ncor=
a	0	0	0	0	0	0	1634.0	5.0	0.0	1634.0	14.0	6.0	22.0	1634.0	22.0	0	0	0
c	0	0	0	0	0	0	19.0	6.0	3.0	1.0	1200.0	0.0	1634.0	0.0	404.0	0	0	0
g	0	0	0	0	0	0	140.0	1.0	1634.0	2.0	434.0	6.0	3.0	0.0	5.0	0	0	0
t	0	0	0	0	0	0	8.0	1634.0	22.0	25.0	13.0	1634.0	9.0	7.0	1634.0	0	0	0