One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m35/peak-motifs_oligos_6nt_mkv3_m35.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m35/peak-motifs_oligos_6nt_mkv3_m35_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m35_shift0 ; 29 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m35_shift0 (oligos_6nt_mkv3_m35oligos_6nt_mkv3_m35)
; oligos_6nt_mkv3_m35 (oligos_6nt_mkv3_m35oligos_6nt_mkv3_m35); m=0 (reference); ncol1=16; shift=0; ncol=16; vsagACAGCTGTccys ; Alignment reference a 306 273 507 176 945 1 1201 7 4 3 2 49 68 242 207 214 c 318 367 197 220 80 1203 4 13 1172 2 1 115 720 555 406 355 g 369 403 261 744 131 0 2 1184 26 5 1202 94 212 190 291 341 t 214 164 242 67 51 3 0 3 5 1197 2 949 207 220 303 297

MA0832.1_shift1 (Tcf21)
; oligos_6nt_mkv3_m35 versus MA0832.1 (Tcf21); m=1/28; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.737483; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA1641.1_shift2 (MYF5)
; oligos_6nt_mkv3_m35 versus MA1641.1 (MYF5); m=2/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.722514; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA1619.1_rc_shift2 (Ptf1a(var.2)_rc)
; oligos_6nt_mkv3_m35 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.71106; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1621.1_rc_shift1 (Rbpjl_rc)
; oligos_6nt_mkv3_m35 versus MA1621.1_rc (Rbpjl_rc); m=4/28; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.69627; -grsaCAGGTGtkbs- ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0

MA1485.1_shift1 (FERD3L)
; oligos_6nt_mkv3_m35 versus MA1485.1 (FERD3L); m=5/28; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.69241; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0500.2_shift2 (MYOG)
; oligos_6nt_mkv3_m35 versus MA0500.2 (MYOG); m=6/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.661221; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA0499.2_shift2 (MYOD1)
; oligos_6nt_mkv3_m35 versus MA0499.2 (MYOD1); m=7/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.643138; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA1618.1_shift2 (Ptf1a)
; oligos_6nt_mkv3_m35 versus MA1618.1 (Ptf1a); m=8/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.638321; --dmaCAGATGttkh- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0

MA0796.1_shift2 (TGIF1)
; oligos_6nt_mkv3_m35 versus MA0796.1 (TGIF1); m=9/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.63535; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0

MA1571.1_rc_shift2 (TGIF2LX_rc)
; oligos_6nt_mkv3_m35 versus MA1571.1_rc (TGIF2LX_rc); m=10/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.633523; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA1572.1_rc_shift2 (TGIF2LY_rc)
; oligos_6nt_mkv3_m35 versus MA1572.1_rc (TGIF2LY_rc); m=11/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.622737; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0

MA0797.1_shift2 (TGIF2)
; oligos_6nt_mkv3_m35 versus MA0797.1 (TGIF2); m=12/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.620956; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0

MA1620.1_rc_shift2 (Ptf1a(var.3)_rc)
; oligos_6nt_mkv3_m35 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=13/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.611202; --rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA0521.1_shift3 (Tcf12)
; oligos_6nt_mkv3_m35 versus MA0521.1 (Tcf12); m=14/28; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.609613; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; oligos_6nt_mkv3_m35 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.592486; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA0783.1_shift2 (PKNOX2)
; oligos_6nt_mkv3_m35 versus MA0783.1 (PKNOX2); m=16/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.591336; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0

MA0745.2_shift2 (SNAI2)
; oligos_6nt_mkv3_m35 versus MA0745.2 (SNAI2); m=17/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.590758; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1109.1_shift2 (NEUROD1)
; oligos_6nt_mkv3_m35 versus MA1109.1 (NEUROD1); m=18/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.571554; --graCAGATGGyrs- ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; oligos_6nt_mkv3_m35 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=19/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.568843; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)
; oligos_6nt_mkv3_m35 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=20/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.551335; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0665.1_rc_shift3 (MSC_rc)
; oligos_6nt_mkv3_m35 versus MA0665.1_rc (MSC_rc); m=21/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.550396; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; oligos_6nt_mkv3_m35 versus MA0667.1_rc (MYF6_rc); m=22/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.534779; ---RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

MA1100.2_shift3 (ASCL1)
; oligos_6nt_mkv3_m35 versus MA1100.2 (ASCL1); m=23/28; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.53325; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0691.1_rc_shift3 (TFAP4_rc)
; oligos_6nt_mkv3_m35 versus MA0691.1_rc (TFAP4_rc); m=24/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.530082; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0816.1_rc_shift3 (Ascl2_rc)
; oligos_6nt_mkv3_m35 versus MA0816.1_rc (Ascl2_rc); m=25/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.528888; ---rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; oligos_6nt_mkv3_m35 versus MA0820.1_rc (FIGLA_rc); m=26/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.47799; ---wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA0048.2_rc_shift3 (NHLH1_rc)
; oligos_6nt_mkv3_m35 versus MA0048.2_rc (NHLH1_rc); m=27/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.474018; ---mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1638.1_shift3 (HAND2)
; oligos_6nt_mkv3_m35 versus MA1638.1 (HAND2); m=28/28; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.440495; ---amCAGATGby--- ; cor=; Ncor= a 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 0 c 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 0 g 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 0 t 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m35_shift0 (oligos_6nt_mkv3_m35oligos_6nt_mkv3_m35)				; oligos_6nt_mkv3_m35 (oligos_6nt_mkv3_m35oligos_6nt_mkv3_m35); m=0 (reference); ncol1=16; shift=0; ncol=16; vsagACAGCTGTccys ; Alignment reference a 306 273 507 176 945 1 1201 7 4 3 2 49 68 242 207 214 c 318 367 197 220 80 1203 4 13 1172 2 1 115 720 555 406 355 g 369 403 261 744 131 0 2 1184 26 5 1202 94 212 190 291 341 t 214 164 242 67 51 3 0 3 5 1197 2 949 207 220 303 297
MA0832.1_shift1 (Tcf21)				; oligos_6nt_mkv3_m35 versus MA0832.1 (Tcf21); m=1/28; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.737483; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0
MA1641.1_shift2 (MYF5)				; oligos_6nt_mkv3_m35 versus MA1641.1 (MYF5); m=2/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.722514; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0
MA1619.1_rc_shift2 (Ptf1a(var.2)_rc)				; oligos_6nt_mkv3_m35 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.71106; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0
MA1621.1_rc_shift1 (Rbpjl_rc)				; oligos_6nt_mkv3_m35 versus MA1621.1_rc (Rbpjl_rc); m=4/28; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.69627; -grsaCAGGTGtkbs- ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0
MA1485.1_shift1 (FERD3L)				; oligos_6nt_mkv3_m35 versus MA1485.1 (FERD3L); m=5/28; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.69241; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0
MA0500.2_shift2 (MYOG)				; oligos_6nt_mkv3_m35 versus MA0500.2 (MYOG); m=6/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.661221; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0
MA0499.2_shift2 (MYOD1)				; oligos_6nt_mkv3_m35 versus MA0499.2 (MYOD1); m=7/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.643138; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0
MA1618.1_shift2 (Ptf1a)				; oligos_6nt_mkv3_m35 versus MA1618.1 (Ptf1a); m=8/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.638321; --dmaCAGATGttkh- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0
MA0796.1_shift2 (TGIF1)				; oligos_6nt_mkv3_m35 versus MA0796.1 (TGIF1); m=9/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.63535; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0
MA1571.1_rc_shift2 (TGIF2LX_rc)				; oligos_6nt_mkv3_m35 versus MA1571.1_rc (TGIF2LX_rc); m=10/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.633523; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0
MA1572.1_rc_shift2 (TGIF2LY_rc)				; oligos_6nt_mkv3_m35 versus MA1572.1_rc (TGIF2LY_rc); m=11/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.622737; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0
MA0797.1_shift2 (TGIF2)				; oligos_6nt_mkv3_m35 versus MA0797.1 (TGIF2); m=12/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.620956; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0
MA1620.1_rc_shift2 (Ptf1a(var.3)_rc)				; oligos_6nt_mkv3_m35 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=13/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.611202; --rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0
MA0521.1_shift3 (Tcf12)				; oligos_6nt_mkv3_m35 versus MA0521.1 (Tcf12); m=14/28; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.609613; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; oligos_6nt_mkv3_m35 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.592486; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0
MA0783.1_shift2 (PKNOX2)				; oligos_6nt_mkv3_m35 versus MA0783.1 (PKNOX2); m=16/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.591336; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0
MA0745.2_shift2 (SNAI2)				; oligos_6nt_mkv3_m35 versus MA0745.2 (SNAI2); m=17/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.590758; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0
MA1109.1_shift2 (NEUROD1)				; oligos_6nt_mkv3_m35 versus MA1109.1 (NEUROD1); m=18/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.571554; --graCAGATGGyrs- ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0 0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)				; oligos_6nt_mkv3_m35 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=19/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.568843; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0
MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)				; oligos_6nt_mkv3_m35 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=20/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.551335; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0
MA0665.1_rc_shift3 (MSC_rc)				; oligos_6nt_mkv3_m35 versus MA0665.1_rc (MSC_rc); m=21/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.550396; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0
MA0667.1_rc_shift3 (MYF6_rc)				; oligos_6nt_mkv3_m35 versus MA0667.1_rc (MYF6_rc); m=22/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.534779; ---RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0
MA1100.2_shift3 (ASCL1)				; oligos_6nt_mkv3_m35 versus MA1100.2 (ASCL1); m=23/28; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.53325; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA0691.1_rc_shift3 (TFAP4_rc)				; oligos_6nt_mkv3_m35 versus MA0691.1_rc (TFAP4_rc); m=24/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.530082; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0
MA0816.1_rc_shift3 (Ascl2_rc)				; oligos_6nt_mkv3_m35 versus MA0816.1_rc (Ascl2_rc); m=25/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.528888; ---rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0
MA0820.1_rc_shift3 (FIGLA_rc)				; oligos_6nt_mkv3_m35 versus MA0820.1_rc (FIGLA_rc); m=26/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.47799; ---wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0
MA0048.2_rc_shift3 (NHLH1_rc)				; oligos_6nt_mkv3_m35 versus MA0048.2_rc (NHLH1_rc); m=27/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.474018; ---mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0
MA1638.1_shift3 (HAND2)				; oligos_6nt_mkv3_m35 versus MA1638.1 (HAND2); m=28/28; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.440495; ---amCAGATGby--- ; cor=; Ncor= a 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 0 c 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 0 g 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 0 t 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0 0