One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m36/peak-motifs_oligos_6nt_mkv3_m36.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m36/peak-motifs_oligos_6nt_mkv3_m36_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m36_shift3 ; 19 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv3_m36_shift3 (oligos_6nt_mkv3_m36oligos_6nt_mkv3_m36)     
; oligos_6nt_mkv3_m36 (oligos_6nt_mkv3_m36oligos_6nt_mkv3_m36); m=0 (reference); ncol1=12; shift=3; ncol=15; ---msGTGGCTCAss
; Alignment reference
a	0	0	0	48	30	11	1	3	20	3	1	8	151	18	47
c	0	0	0	57	65	4	2	1	1	181	3	177	15	72	59
g	0	0	0	46	51	170	3	185	167	4	11	1	15	60	53
t	0	0	0	38	43	4	183	0	1	1	174	3	8	39	30
MA1134.1_rc_shift3 (FOS::JUNB_rc) 
; oligos_6nt_mkv3_m36 versus MA1134.1_rc (FOS::JUNB_rc); m=1/18; ncol2=12; w=12; offset=0; strand=R; shift=3; score=0.705729; ---bkrTGAsTCAym
; cor=; Ncor=
a	0	0	0	156.0	184.0	658.0	1.0	1.0	996.0	25.0	4.0	131.0	998.0	36.0	286.0
c	0	0	0	256.0	178.0	51.0	1.0	1.0	3.0	618.0	1.0	868.0	1.0	267.0	372.0
g	0	0	0	304.0	363.0	284.0	1.0	971.0	1.0	309.0	30.0	1.0	1.0	105.0	168.0
t	0	0	0	283.0	275.0	7.0	998.0	27.0	1.0	48.0	965.0	1.0	1.0	593.0	174.0
MA0478.1_shift3 (FOSL2) 
; oligos_6nt_mkv3_m36 versus MA0478.1 (FOSL2); m=2/18; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.693503; ---krrTGAsTCAb-
; cor=; Ncor=
a	0	0	0	833.0	1525.0	2861.0	0.0	0.0	5075.0	0.0	0.0	205.0	5318.0	0.0	0
c	0	0	0	994.0	592.0	55.0	0.0	0.0	51.0	3286.0	0.0	5113.0	0.0	1399.0	0
g	0	0	0	2086.0	2707.0	2328.0	0.0	5318.0	192.0	1838.0	0.0	0.0	0.0	1933.0	0
t	0	0	0	1405.0	494.0	74.0	5318.0	0.0	0.0	194.0	5318.0	0.0	0.0	1986.0	0
MA1141.1_rc_shift3 (FOS::JUND_rc) 
; oligos_6nt_mkv3_m36 versus MA1141.1_rc (FOS::JUND_rc); m=3/18; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.678235; ---bkrTGACTCAym
; cor=; Ncor=
a	0	0	0	180.0	185.0	612.0	0.0	0.0	999.0	19.0	15.0	129.0	999.0	38.0	263.0
c	0	0	0	292.0	195.0	77.0	0.0	0.0	0.0	867.0	0.0	871.0	0.0	266.0	389.0
g	0	0	0	264.0	370.0	290.0	0.0	970.0	0.0	40.0	91.0	0.0	1.0	104.0	167.0
t	0	0	0	264.0	250.0	21.0	999.0	29.0	0.0	75.0	894.0	0.0	0.0	593.0	182.0
MA1128.1_shift3 (FOSL1::JUN) 
; oligos_6nt_mkv3_m36 versus MA1128.1 (FOSL1::JUN); m=4/18; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.667419; ---kkrTGACTCAtm
; cor=; Ncor=
a	0	0	0	208.0	172.0	602.0	1.0	3.0	994.0	26.0	33.0	159.0	984.0	57.0	296.0
c	0	0	0	246.0	159.0	89.0	2.0	2.0	2.0	826.0	2.0	835.0	4.0	245.0	308.0
g	0	0	0	253.0	380.0	283.0	1.0	957.0	2.0	51.0	140.0	2.0	9.0	119.0	173.0
t	0	0	0	293.0	289.0	26.0	996.0	38.0	3.0	97.0	826.0	4.0	4.0	579.0	223.0
MA0477.2_shift3 (FOSL1) 
; oligos_6nt_mkv3_m36 versus MA0477.2 (FOSL1); m=5/18; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.661209; ---draTGACTCAth
; cor=; Ncor=
a	0	0	0	14979.0	15921.0	35056.0	260.0	515.0	56806.0	2557.0	1060.0	3133.0	56408.0	2716.0	14671.0
c	0	0	0	12491.0	11018.0	6703.0	460.0	301.0	287.0	43918.0	163.0	53711.0	344.0	10399.0	15640.0
g	0	0	0	14848.0	16855.0	13127.0	183.0	54619.0	286.0	8615.0	598.0	278.0	566.0	6533.0	12314.0
t	0	0	0	15363.0	13887.0	2795.0	56778.0	2246.0	302.0	2591.0	55860.0	559.0	363.0	38033.0	15056.0
MA0462.2_shift4 (BATF::JUN) 
; oligos_6nt_mkv3_m36 versus MA0462.2 (BATF::JUN); m=6/18; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.656496; ----waTGACTCAth
; cor=; Ncor=
a	0	0	0	0	10765.0	18789.0	367.0	834.0	37280.0	1399.0	755.0	3955.0	36854.0	6299.0	13407.0
c	0	0	0	0	4762.0	7260.0	275.0	400.0	204.0	31168.0	241.0	32770.0	318.0	6105.0	9668.0
g	0	0	0	0	9317.0	6729.0	182.0	33135.0	350.0	4188.0	539.0	522.0	424.0	7745.0	4923.0
t	0	0	0	0	13310.0	5376.0	37330.0	3785.0	320.0	1399.0	36619.0	907.0	558.0	18005.0	10156.0
MA1634.1_shift4 (BATF) 
; oligos_6nt_mkv3_m36 versus MA1634.1 (BATF); m=7/18; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.655509; ----waTGACTCAth
; cor=; Ncor=
a	0	0	0	0	13555.0	22575.0	483.0	1139.0	45946.0	2051.0	1130.0	4742.0	45316.0	8146.0	16139.0
c	0	0	0	0	5742.0	8931.0	355.0	570.0	250.0	37333.0	306.0	40279.0	431.0	7566.0	12048.0
g	0	0	0	0	11492.0	8627.0	283.0	40617.0	341.0	5573.0	836.0	711.0	507.0	9681.0	5919.0
t	0	0	0	0	16219.0	6875.0	45887.0	4682.0	471.0	2051.0	44736.0	1276.0	754.0	21615.0	12902.0
MA0835.2_shift4 (BATF3) 
; oligos_6nt_mkv3_m36 versus MA0835.2 (BATF3); m=8/18; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.651006; ----waTGACTCAtw
; cor=; Ncor=
a	0	0	0	0	3609.0	6137.0	132.0	245.0	11670.0	408.0	267.0	1248.0	11529.0	2334.0	4521.0
c	0	0	0	0	1245.0	2106.0	59.0	62.0	92.0	10589.0	79.0	10347.0	84.0	1664.0	2733.0
g	0	0	0	0	2608.0	1831.0	37.0	10420.0	87.0	560.0	117.0	88.0	117.0	2249.0	1255.0
t	0	0	0	0	4503.0	1891.0	11737.0	1238.0	116.0	408.0	11502.0	282.0	235.0	5718.0	3456.0
MA1622.1_shift2 (Smad2::Smad3) 
; oligos_6nt_mkv3_m36 versus MA1622.1 (Smad2::Smad3); m=9/18; ncol2=14; w=12; offset=-1; strand=D; shift=2; score=0.632796; --rtkrTGACTCAtw
; cor=; Ncor=
a	0	0	2995.0	2508.0	2499.0	4451.0	79.0	90.0	10141.0	627.0	247.0	711.0	10056.0	683.0	2948.0
c	0	0	2254.0	2515.0	1642.0	2212.0	59.0	82.0	44.0	7480.0	53.0	9443.0	85.0	2047.0	2479.0
g	0	0	2615.0	2324.0	3479.0	2888.0	56.0	9768.0	58.0	1542.0	68.0	90.0	79.0	1979.0	2154.0
t	0	0	2481.0	2998.0	2725.0	794.0	10151.0	405.0	102.0	696.0	9977.0	101.0	125.0	5636.0	2764.0
MA1130.1_rc_shift4 (FOSL2::JUN_rc) 
; oligos_6nt_mkv3_m36 versus MA1130.1_rc (FOSL2::JUN_rc); m=10/18; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.611688; ----krTGACTCAym
; cor=; Ncor=
a	0	0	0	0	209.0	589.0	1.0	1.0	998.0	58.0	29.0	158.0	998.0	55.0	269.0
c	0	0	0	0	180.0	93.0	1.0	1.0	1.0	698.0	1.0	840.0	1.0	282.0	338.0
g	0	0	0	0	341.0	299.0	0.0	979.0	1.0	141.0	123.0	1.0	1.0	121.0	179.0
t	0	0	0	0	269.0	19.0	998.0	20.0	1.0	103.0	847.0	1.0	1.0	542.0	214.0
MA0099.3_rc_shift4 (FOS::JUN_rc) 
; oligos_6nt_mkv3_m36 versus MA0099.3_rc (FOS::JUN_rc); m=11/18; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.598167; ----krTGACTCAy-
; cor=; Ncor=
a	0	0	0	0	162.0	568.0	4.0	4.0	991.0	54.0	45.0	168.0	990.0	40.0	0
c	0	0	0	0	164.0	95.0	2.0	3.0	2.0	688.0	4.0	824.0	2.0	257.0	0
g	0	0	0	0	397.0	313.0	2.0	963.0	2.0	180.0	131.0	1.0	5.0	111.0	0
t	0	0	0	0	277.0	24.0	992.0	30.0	5.0	78.0	820.0	7.0	3.0	592.0	0
MA1135.1_shift4 (FOSB::JUNB) 
; oligos_6nt_mkv3_m36 versus MA1135.1 (FOSB::JUNB); m=12/18; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.592754; ----krTGAsTCAy-
; cor=; Ncor=
a	0	0	0	0	119.0	598.0	1.0	1.0	997.0	34.0	2.0	191.0	998.0	37.0	0
c	0	0	0	0	182.0	61.0	0.0	0.0	1.0	596.0	1.0	808.0	0.0	259.0	0
g	0	0	0	0	429.0	321.0	1.0	980.0	1.0	309.0	39.0	1.0	1.0	126.0	0
t	0	0	0	0	270.0	20.0	998.0	19.0	1.0	61.0	958.0	1.0	1.0	578.0	0
MA1144.1_shift4 (FOSL2::JUND) 
; oligos_6nt_mkv3_m36 versus MA1144.1 (FOSL2::JUND); m=13/18; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.589259; ----krTGAsTCAy-
; cor=; Ncor=
a	0	0	0	0	137.0	634.0	0.0	0.0	998.0	46.0	6.0	140.0	999.0	38.0	0
c	0	0	0	0	143.0	60.0	0.0	0.0	1.0	604.0	0.0	860.0	0.0	266.0	0
g	0	0	0	0	446.0	291.0	0.0	990.0	0.0	292.0	60.0	0.0	0.0	113.0	0
t	0	0	0	0	275.0	14.0	999.0	10.0	0.0	58.0	934.0	0.0	0.0	583.0	0
MA1138.1_shift4 (FOSL2::JUNB) 
; oligos_6nt_mkv3_m36 versus MA1138.1 (FOSL2::JUNB); m=14/18; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.58848; ----krTGAsTCAy-
; cor=; Ncor=
a	0	0	0	0	151.0	621.0	0.0	0.0	999.0	54.0	1.0	168.0	999.0	35.0	0
c	0	0	0	0	164.0	53.0	0.0	0.0	0.0	568.0	0.0	831.0	0.0	251.0	0
g	0	0	0	0	407.0	314.0	0.0	985.0	0.0	292.0	26.0	0.0	0.0	112.0	0
t	0	0	0	0	277.0	13.0	999.0	14.0	0.0	85.0	973.0	0.0	0.0	602.0	0
MA1633.1_shift4 (BACH1) 
; oligos_6nt_mkv3_m36 versus MA1633.1 (BACH1); m=15/18; ncol2=13; w=11; offset=1; strand=D; shift=4; score=0.554905; ----saTGACTCAGC
; cor=; Ncor=
a	0	0	0	0	3257.0	6929.0	105.0	97.0	15046.0	443.0	650.0	576.0	14778.0	339.0	769.0
c	0	0	0	0	3946.0	3833.0	267.0	149.0	230.0	12597.0	220.0	14563.0	194.0	623.0	13382.0
g	0	0	0	0	4835.0	3848.0	149.0	14831.0	167.0	2083.0	266.0	178.0	310.0	13050.0	858.0
t	0	0	0	0	3519.0	947.0	15036.0	480.0	114.0	434.0	14421.0	240.0	275.0	1545.0	548.0
MA0489.1_shift0 (JUN(var.2)) 
; oligos_6nt_mkv3_m36 versus MA0489.1 (JUN(var.2)); m=16/18; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.52178; rrrrrrTGAsTCAt-
; cor=; Ncor=
a	4852.0	3927.0	3726.0	4396.0	4146.0	5930.0	0.0	0.0	10953.0	382.0	199.0	956.0	10956.0	376.0	0
c	1250.0	1324.0	1127.0	1122.0	593.0	993.0	0.0	0.0	0.0	5704.0	0.0	10000.0	0.0	2509.0	0
g	2818.0	4110.0	4330.0	3461.0	4213.0	4033.0	0.0	10956.0	0.0	4090.0	0.0	0.0	0.0	2645.0	0
t	2036.0	1595.0	1773.0	1977.0	2004.0	0.0	10956.0	0.0	3.0	780.0	10757.0	0.0	0.0	5426.0	0
MA0719.1_rc_shift6 (RHOXF1_rc) 
; oligos_6nt_mkv3_m36 versus MA0719.1_rc (RHOXF1_rc); m=17/18; ncol2=8; w=8; offset=3; strand=R; shift=6; score=0.47957; ------kGGmTyAw-
; cor=; Ncor=
a	0	0	0	0	0	0	2123.0	2275.0	0.0	7376.0	0.0	1367.0	10916.0	3193.0	0
c	0	0	0	0	0	0	2117.0	0.0	0.0	3540.0	0.0	5373.0	478.0	1855.0	0
g	0	0	0	0	0	0	3453.0	10916.0	10916.0	0.0	0.0	0.0	0.0	2644.0	0
t	0	0	0	0	0	0	3223.0	0.0	0.0	0.0	10916.0	5543.0	2837.0	3224.0	0
MA1581.1_rc_shift5 (ZBTB6_rc) 
; oligos_6nt_mkv3_m36 versus MA1581.1_rc (ZBTB6_rc); m=18/18; ncol2=13; w=10; offset=2; strand=R; shift=5; score=0.469509; -----skGGCTCAAG
; cor=; Ncor=
a	0	0	0	0	0	344.0	464.0	223.0	46.0	14.0	21.0	7.0	1566.0	2042.0	28.0
c	0	0	0	0	0	749.0	467.0	88.0	38.0	2135.0	20.0	2148.0	409.0	52.0	25.0
g	0	0	0	0	0	593.0	707.0	1814.0	2087.0	20.0	28.0	59.0	45.0	104.0	2080.0
t	0	0	0	0	0	541.0	589.0	102.0	56.0	58.0	2158.0	13.0	207.0	29.0	94.0