Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41.tf
		file1	1	11	256
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m41 MA1463.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 ARGFX 0.755 0.687 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m41 MA0773.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 MEF2D 0.876 0.674 11 12 10 13 0.7692 0.9091 0.8333 D -2
oligos_6nt_mkv3_m41 MA0660.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 MEF2B 0.871 0.670 11 12 10 13 0.7692 0.9091 0.8333 D -2
oligos_6nt_mkv3_m41 MA0886.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 EMX2 0.714 0.649 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv3_m41 MA0658.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 LHX6 0.706 0.641 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv3_m41 MA0628.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 POU6F1 0.701 0.637 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv3_m41 MA0621.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 mix-a 0.736 0.613 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6nt_mkv3_m41 MA0497.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 MEF2C 0.836 0.613 11 15 11 15 0.7333 1.0000 0.7333 D -4
oligos_6nt_mkv3_m41 MA1606.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 Foxf1 0.730 0.608 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6nt_mkv3_m41 MA0052.4 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 MEF2A 0.829 0.608 11 15 11 15 0.7333 1.0000 0.7333 D -3
oligos_6nt_mkv3_m41 MA0047.3 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXA2 0.721 0.601 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6nt_mkv3_m41 MA1683.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXA3 0.719 0.599 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6nt_mkv3_m41 MA0481.3 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXP1 0.714 0.595 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6nt_mkv3_m41 MA1103.2 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXK2 0.712 0.593 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6nt_mkv3_m41 MA0593.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXP2 0.701 0.584 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6nt_mkv3_m41 MA0618.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 LBX1 0.777 0.565 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_6nt_mkv3_m41 MA0846.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXC2 0.709 0.546 11 12 10 13 0.7692 0.9091 0.8333 D -2
oligos_6nt_mkv3_m41 MA0726.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 VSX2 0.748 0.544 11 8 8 11 0.7273 0.7273 1.0000 R 1
oligos_6nt_mkv3_m41 MA0845.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXB1 0.783 0.542 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_6nt_mkv3_m41 MA0075.3 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 PRRX2 0.743 0.541 11 8 8 11 0.7273 0.7273 1.0000 R 1
oligos_6nt_mkv3_m41 MA0701.2 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 LHX9 0.736 0.535 11 8 8 11 0.7273 0.7273 1.0000 R 1
oligos_6nt_mkv3_m41 MA0032.2 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXC1 0.772 0.534 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_6nt_mkv3_m41 MA0912.2 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 HOXD3 0.732 0.532 11 8 8 11 0.7273 0.7273 1.0000 R 1
oligos_6nt_mkv3_m41 MA0612.2 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 EMX1 0.728 0.529 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_6nt_mkv3_m41 MA0725.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 VSX1 0.723 0.526 11 8 8 11 0.7273 0.7273 1.0000 R 1
oligos_6nt_mkv3_m41 MA0033.2 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXL1 0.819 0.521 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_6nt_mkv3_m41 MA0108.2 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 TBP 0.705 0.517 11 15 11 15 0.7333 1.0000 0.7333 D -1
oligos_6nt_mkv3_m41 MA1519.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 LHX5 0.710 0.517 11 8 8 11 0.7273 0.7273 1.0000 R 1
oligos_6nt_mkv3_m41 MA0702.2 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 LMX1A 0.708 0.515 11 8 8 11 0.7273 0.7273 1.0000 R 1
oligos_6nt_mkv3_m41 MA0068.2 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 PAX4 0.706 0.513 11 8 8 11 0.7273 0.7273 1.0000 R 1
oligos_6nt_mkv3_m41 MA0900.2 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 HOXA2 0.704 0.512 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_6nt_mkv3_m41 MA1577.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 TLX2 0.704 0.512 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_6nt_mkv3_m41 MA0848.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXO4 0.764 0.486 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_6nt_mkv3_m41 MA0850.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXP3 0.764 0.486 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_6nt_mkv3_m41 MA0042.2 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXI1 0.755 0.480 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_6nt_mkv3_m41 MA1607.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 Foxl2 0.703 0.469 11 14 10 15 0.6667 0.9091 0.7143 D -4
oligos_6nt_mkv3_m41 MA0849.1 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXO6 0.727 0.463 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_6nt_mkv3_m41 MA0847.2 oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41 FOXD2 0.737 0.442 11 13 9 15 0.6000 0.8182 0.6923 D -4 
 Host name	pedagogix
 Job started	2020-04-13.224934
 Job done	2020-04-13.225021
 Seconds	6.49
	user	6.5
	system	1.55
	cuser	36.54
;	csystem	2.72