One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m41/peak-motifs_oligos_6nt_mkv3_m41_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m41_shift4 ; 39 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m41_shift4 (oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41)
; oligos_6nt_mkv3_m41 (oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41); m=0 (reference); ncol1=11; shift=4; ncol=15; ----twTAAATAGmc ; Alignment reference a 0 0 0 0 49 85 28 239 226 230 10 236 21 69 61 c 0 0 0 0 49 56 11 3 12 9 11 2 14 74 78 g 0 0 0 0 46 49 16 6 11 7 3 11 195 57 58 t 0 0 0 0 112 66 201 8 7 10 232 7 26 56 59

MA1463.1_rc_shift4 (ARGFX_rc)
; oligos_6nt_mkv3_m41 versus MA1463.1_rc (ARGFX_rc); m=1/38; ncol2=10; w=10; offset=0; strand=R; shift=4; score=0.686815; ----tyTAATTAgm- ; cor=; Ncor= a 0 0 0 0 3158.0 900.0 1048.0 16589.0 16589.0 0.0 4.0 16589.0 4423.0 6479.0 0 c 0 0 0 0 2351.0 6249.0 1492.0 0.0 0.0 0.0 0.0 96.0 1748.0 4467.0 0 g 0 0 0 0 4098.0 563.0 499.0 44.0 0.0 0.0 46.0 1130.0 16589.0 1750.0 0 t 0 0 0 0 6983.0 10340.0 16589.0 0.0 0.0 16589.0 16589.0 270.0 2558.0 3893.0 0

MA0773.1_shift2 (MEF2D)
; oligos_6nt_mkv3_m41 versus MA0773.1 (MEF2D); m=2/38; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.673613; --dCTAwAAATAGm- ; cor=; Ncor= a 0 0 2120.0 28.0 3.0 5803.0 2782.0 5803.0 5803.0 5803.0 0.0 5803.0 339.0 3206.0 0 c 0 0 109.0 5803.0 22.0 8.0 0.0 4.0 0.0 2.0 0.0 0.0 17.0 2598.0 0 g 0 0 1933.0 0.0 0.0 2.0 2.0 0.0 2.0 1.0 0.0 4.0 5803.0 70.0 0 t 0 0 1642.0 53.0 5803.0 6.0 3021.0 778.0 217.0 69.0 5803.0 0.0 5.0 585.0 0

MA0660.1_shift2 (MEF2B)
; oligos_6nt_mkv3_m41 versus MA0660.1 (MEF2B); m=3/38; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.669785; --rCTAwAAATAGm- ; cor=; Ncor= a 0 0 1385.0 18.0 0.0 3150.0 1495.0 3150.0 3150.0 3150.0 0.0 3150.0 98.0 1013.0 0 c 0 0 72.0 3150.0 25.0 0.0 2.0 0.0 3.0 0.0 0.0 3.0 19.0 2138.0 0 g 0 0 1766.0 0.0 0.0 0.0 0.0 12.0 2.0 0.0 0.0 2.0 3150.0 99.0 0 t 0 0 505.0 12.0 3150.0 15.0 1655.0 710.0 143.0 45.0 3150.0 3.0 3.0 506.0 0

MA0886.1_shift4 (EMX2)
; oligos_6nt_mkv3_m41 versus MA0886.1 (EMX2); m=4/38; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.649067; ----rsTAATTAgs- ; cor=; Ncor= a 0 0 0 0 10479.0 5704.0 834.0 37262.0 37262.0 0.0 0.0 37262.0 9139.0 5970.0 0 c 0 0 0 0 8412.0 13337.0 7761.0 4938.0 0.0 0.0 0.0 0.0 7124.0 13054.0 0 g 0 0 0 0 12802.0 10582.0 0.0 678.0 0.0 0.0 4025.0 0.0 17672.0 10195.0 0 t 0 0 0 0 5569.0 7639.0 29501.0 1236.0 0.0 37262.0 37262.0 0.0 3328.0 8043.0 0

MA0658.1_shift4 (LHX6)
; oligos_6nt_mkv3_m41 versus MA0658.1 (LHX6); m=5/38; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.641376; ----rcTAATTAry- ; cor=; Ncor= a 0 0 0 0 1857.0 529.0 0.0 4438.0 4438.0 0.0 0.0 4438.0 1668.0 548.0 0 c 0 0 0 0 769.0 3015.0 253.0 90.0 14.0 98.0 766.0 0.0 637.0 1654.0 0 g 0 0 0 0 1548.0 791.0 28.0 487.0 0.0 15.0 108.0 243.0 2769.0 728.0 0 t 0 0 0 0 264.0 1422.0 4438.0 0.0 0.0 4438.0 4438.0 2.0 194.0 1507.0 0

MA0628.1_shift4 (POU6F1)
; oligos_6nt_mkv3_m41 versus MA0628.1 (POU6F1); m=6/38; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.637135; ----ayTAATTArt- ; cor=; Ncor= a 0 0 0 0 507.0 151.0 32.0 905.0 938.0 14.0 18.0 950.0 353.0 89.0 0 c 0 0 0 0 193.0 351.0 10.0 70.0 34.0 14.0 8.0 8.0 145.0 211.0 0 g 0 0 0 0 211.0 145.0 8.0 8.0 14.0 34.0 70.0 10.0 351.0 193.0 0 t 0 0 0 0 89.0 353.0 950.0 18.0 14.0 938.0 905.0 32.0 151.0 507.0 0

MA0621.1_shift3 (mix-a)
; oligos_6nt_mkv3_m41 versus MA0621.1 (mix-a); m=7/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.613248; ---artTAATTAgk- ; cor=; Ncor= a 0 0 0 312.0 345.0 130.0 0.0 1000.0 1000.0 0.0 0.0 938.0 228.0 205.0 0 c 0 0 0 229.0 150.0 146.0 0.0 0.0 0.0 0.0 0.0 21.0 100.0 205.0 0 g 0 0 0 229.0 261.0 46.0 0.0 0.0 0.0 0.0 0.0 21.0 488.0 290.0 0 t 0 0 0 229.0 244.0 679.0 1000.0 0.0 0.0 1000.0 1000.0 21.0 184.0 301.0 0

MA0497.1_shift0 (MEF2C)
; oligos_6nt_mkv3_m41 versus MA0497.1 (MEF2C); m=8/38; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.61324; rdkcyAAAAATAGmw ; cor=; Ncor= a 705.0 733.0 431.0 382.0 0.0 1616.0 1706.0 2107.0 2131.0 2135.0 56.0 2177.0 389.0 975.0 1009.0 c 321.0 151.0 196.0 1412.0 985.0 256.0 32.0 0.0 0.0 0.0 62.0 0.0 120.0 836.0 450.0 g 676.0 573.0 822.0 78.0 0.0 74.0 241.0 87.0 2.0 4.0 0.0 32.0 1671.0 148.0 126.0 t 507.0 752.0 760.0 337.0 1224.0 263.0 230.0 15.0 76.0 70.0 2091.0 0.0 29.0 250.0 624.0

MA1606.1_shift3 (Foxf1)
; oligos_6nt_mkv3_m41 versus MA1606.1 (Foxf1); m=9/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.608106; ---awrTAAACAaa- ; cor=; Ncor= a 0 0 0 23159.0 17275.0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 18673.0 20323.0 0 c 0 0 0 10753.0 7560.0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 12643.0 11715.0 0 g 0 0 0 12462.0 8287.0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 14294.0 12844.0 0 t 0 0 0 13166.0 26418.0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 13930.0 14658.0 0

MA0052.4_shift1 (MEF2A)
; oligos_6nt_mkv3_m41 versus MA0052.4 (MEF2A); m=10/38; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=0.607581; -wkcTAAAAATAGaw ; cor=; Ncor= a 0 5075.0 4033.0 1984.0 627.0 12437.0 13132.0 14680.0 14453.0 14956.0 441.0 15582.0 2566.0 7709.0 6171.0 c 0 2119.0 1960.0 10919.0 2974.0 1013.0 253.0 141.0 231.0 173.0 349.0 50.0 1060.0 4039.0 3523.0 g 0 3651.0 4493.0 1007.0 236.0 1066.0 610.0 506.0 241.0 202.0 215.0 422.0 11104.0 1605.0 1810.0 t 0 5317.0 5676.0 2252.0 12325.0 1646.0 2167.0 835.0 1237.0 831.0 15157.0 108.0 1432.0 2809.0 4658.0

MA0047.3_shift3 (FOXA2)
; oligos_6nt_mkv3_m41 versus MA0047.3 (FOXA2); m=11/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.600902; ---awGTAAACAww- ; cor=; Ncor= a 0 0 0 112241.0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 76950.0 85410.0 0 c 0 0 0 34080.0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 50576.0 53633.0 0 g 0 0 0 63806.0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 50527.0 56632.0 0 t 0 0 0 52026.0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 84100.0 66478.0 0

MA1683.1_shift3 (FOXA3)
; oligos_6nt_mkv3_m41 versus MA1683.1 (FOXA3); m=12/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.599094; ---rwGTAAACAww- ; cor=; Ncor= a 0 0 0 18375.0 16693.0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 13442.0 14902.0 0 c 0 0 0 8520.0 3627.0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 9975.0 9884.0 0 g 0 0 0 12744.0 9296.0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 11451.0 11103.0 0 t 0 0 0 9298.0 19321.0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 14069.0 13048.0 0

MA0481.3_shift3 (FOXP1)
; oligos_6nt_mkv3_m41 versus MA0481.3 (FOXP1); m=13/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.595313; ---awGTAAACAww- ; cor=; Ncor= a 0 0 0 26982.0 26879.0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 20210.0 25974.0 0 c 0 0 0 13908.0 6209.0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 17235.0 14312.0 0 g 0 0 0 16635.0 14136.0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 15846.0 12809.0 0 t 0 0 0 17193.0 27494.0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 21427.0 21623.0 0

MA1103.2_shift3 (FOXK2)
; oligos_6nt_mkv3_m41 versus MA1103.2 (FOXK2); m=14/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.593312; ---awGTAAACAar- ; cor=; Ncor= a 0 0 0 6548.0 4861.0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 4836.0 4855.0 0 c 0 0 0 2872.0 2198.0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 3877.0 3788.0 0 g 0 0 0 3471.0 3423.0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 3950.0 5012.0 0 t 0 0 0 3788.0 6197.0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 4016.0 3024.0 0

MA0593.1_shift3 (FOXP2)
; oligos_6nt_mkv3_m41 versus MA0593.1 (FOXP2); m=15/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.584065; ---awGTAAACAra- ; cor=; Ncor= a 0 0 0 330.0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 332.0 0 c 0 0 0 113.0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 124.0 0 g 0 0 0 190.0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 184.0 0 t 0 0 0 133.0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 126.0 0

MA0618.1_shift5 (LBX1)
; oligos_6nt_mkv3_m41 versus MA0618.1 (LBX1); m=16/38; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.564949; -----tTAAYTRG-- ; cor=; Ncor= a 0 0 0 0 0 217.0 0.0 999.0 999.0 0.0 143.0 731.0 29.0 0 0 c 0 0 0 0 0 131.0 49.0 0.0 0.0 262.0 0.0 0.0 114.0 0 0 g 0 0 0 0 0 174.0 0.0 0.0 0.0 0.0 119.0 268.0 799.0 0 0 t 0 0 0 0 0 478.0 951.0 0.0 0.0 738.0 738.0 0.0 57.0 0 0

MA0846.1_shift2 (FOXC2)
; oligos_6nt_mkv3_m41 versus MA0846.1 (FOXC2); m=17/38; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.545705; --wAwrTAAAYAww- ; cor=; Ncor= a 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 10995.0 0 c 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 3080.0 0 g 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 2649.0 0 t 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 9461.0 0

MA0726.1_rc_shift5 (VSX2_rc)
; oligos_6nt_mkv3_m41 versus MA0726.1_rc (VSX2_rc); m=18/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.543993; -----cTAATTAr-- ; cor=; Ncor= a 0 0 0 0 0 3387.0 1014.0 13809.0 13809.0 63.0 402.0 13809.0 4255.0 0 0 c 0 0 0 0 0 4288.0 2109.0 447.0 92.0 123.0 343.0 363.0 445.0 0 0 g 0 0 0 0 0 3243.0 321.0 567.0 186.0 124.0 397.0 2725.0 9554.0 0 0 t 0 0 0 0 0 2891.0 13809.0 626.0 118.0 13809.0 13809.0 1080.0 427.0 0 0

MA0845.1_shift2 (FOXB1)
; oligos_6nt_mkv3_m41 versus MA0845.1 (FOXB1); m=19/38; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.541991; --wAwGTMAAyAt-- ; cor=; Ncor= a 0 0 2393.0 5343.0 1983.0 1159.0 180.0 4891.0 6841.0 6841.0 28.0 6841.0 1704.0 0 0 c 0 0 272.0 263.0 218.0 54.0 240.0 1950.0 213.0 47.0 2252.0 0.0 573.0 0 0 g 0 0 190.0 1498.0 409.0 6841.0 113.0 75.0 0.0 47.0 104.0 157.0 556.0 0 0 t 0 0 4448.0 561.0 4858.0 124.0 6841.0 73.0 381.0 216.0 4589.0 147.0 4008.0 0 0

MA0075.3_rc_shift5 (PRRX2_rc)
; oligos_6nt_mkv3_m41 versus MA0075.3_rc (PRRX2_rc); m=20/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.540665; -----yTAATTrg-- ; cor=; Ncor= a 0 0 0 0 0 1295.0 0.0 6720.0 6720.0 0.0 0.0 4711.0 1933.0 0 0 c 0 0 0 0 0 1862.0 399.0 0.0 0.0 0.0 3.0 131.0 1613.0 0 0 g 0 0 0 0 0 1271.0 1.0 0.0 0.0 0.0 29.0 2008.0 6720.0 0 0 t 0 0 0 0 0 2291.0 6720.0 0.0 0.0 6720.0 6720.0 122.0 778.0 0 0

MA0701.2_rc_shift5 (LHX9_rc)
; oligos_6nt_mkv3_m41 versus MA0701.2_rc (LHX9_rc); m=21/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.535162; -----yTAATTrG-- ; cor=; Ncor= a 0 0 0 0 0 856.0 0.0 6075.0 6075.0 0.0 20.0 3983.0 1219.0 0 0 c 0 0 0 0 0 1946.0 305.0 170.0 0.0 0.0 0.0 0.0 1056.0 0 0 g 0 0 0 0 0 1013.0 0.0 0.0 0.0 0.0 505.0 2093.0 6075.0 0 0 t 0 0 0 0 0 2261.0 6075.0 0.0 0.0 6075.0 6075.0 0.0 390.0 0 0

MA0032.2_shift2 (FOXC1)
; oligos_6nt_mkv3_m41 versus MA0032.2 (FOXC1); m=22/38; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.534116; --wAwRTMAAyAw-- ; cor=; Ncor= a 0 0 6452.0 14324.0 7893.0 4858.0 2496.0 13117.0 18489.0 18489.0 122.0 18489.0 6702.0 0 0 c 0 0 772.0 728.0 2008.0 336.0 1652.0 5372.0 108.0 56.0 8782.0 27.0 1558.0 0 0 g 0 0 304.0 4165.0 2422.0 13631.0 390.0 21.0 0.0 141.0 165.0 433.0 1107.0 0 0 t 0 0 12038.0 1386.0 10596.0 51.0 18489.0 45.0 57.0 112.0 9708.0 184.0 11787.0 0 0

MA0912.2_rc_shift5 (HOXD3_rc)
; oligos_6nt_mkv3_m41 versus MA0912.2_rc (HOXD3_rc); m=23/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.532003; -----gTAATTAG-- ; cor=; Ncor= a 0 0 0 0 0 1674.0 0.0 14562.0 14562.0 0.0 0.0 14562.0 2947.0 0 0 c 0 0 0 0 0 3187.0 2198.0 4453.0 0.0 0.0 0.0 0.0 827.0 0 0 g 0 0 0 0 0 8987.0 0.0 0.0 0.0 0.0 742.0 94.0 11615.0 0 0 t 0 0 0 0 0 714.0 14562.0 0.0 0.0 14562.0 14562.0 0.0 276.0 0 0

MA0612.2_shift5 (EMX1)
; oligos_6nt_mkv3_m41 versus MA0612.2 (EMX1); m=24/38; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.529147; -----sTAATTAs-- ; cor=; Ncor= a 0 0 0 0 0 1276.0 19.0 9544.0 9544.0 0.0 0.0 9544.0 1333.0 0 0 c 0 0 0 0 0 3425.0 2263.0 1235.0 0.0 0.0 0.0 0.0 2633.0 0 0 g 0 0 0 0 0 3066.0 0.0 0.0 0.0 0.0 933.0 0.0 4516.0 0 0 t 0 0 0 0 0 1777.0 7281.0 0.0 0.0 9544.0 9544.0 0.0 1062.0 0 0

MA0725.1_rc_shift5 (VSX1_rc)
; oligos_6nt_mkv3_m41 versus MA0725.1_rc (VSX1_rc); m=25/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.525712; -----vTAATTAr-- ; cor=; Ncor= a 0 0 0 0 0 3732.0 1372.0 13572.0 13572.0 90.0 554.0 13572.0 5119.0 0 0 c 0 0 0 0 0 3658.0 3337.0 984.0 103.0 172.0 553.0 572.0 561.0 0 0 g 0 0 0 0 0 3555.0 516.0 761.0 199.0 154.0 626.0 3131.0 8453.0 0 0 t 0 0 0 0 0 2626.0 13572.0 898.0 172.0 13572.0 13572.0 1836.0 756.0 0 0

MA0033.2_shift5 (FOXL1)
; oligos_6nt_mkv3_m41 versus MA0033.2 (FOXL1); m=26/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.521264; -----rTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 c 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 g 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 t 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0

MA0108.2_shift3 (TBP)
; oligos_6nt_mkv3_m41 versus MA0108.2 (TBP); m=27/38; ncol2=15; w=11; offset=-1; strand=D; shift=3; score=0.517077; ---sTATAWAwrsss ; cor=; Ncor= a 0 0 0 61.0 16.0 352.0 3.0 354.0 268.0 360.0 222.0 155.0 56.0 83.0 82.0 c 0 0 0 145.0 46.0 0.0 10.0 0.0 0.0 3.0 2.0 44.0 135.0 147.0 127.0 g 0 0 0 152.0 18.0 2.0 2.0 5.0 0.0 20.0 44.0 157.0 150.0 128.0 128.0 t 0 0 0 31.0 309.0 35.0 374.0 30.0 121.0 6.0 121.0 33.0 48.0 31.0 52.0

MA1519.1_rc_shift5 (LHX5_rc)
; oligos_6nt_mkv3_m41 versus MA1519.1_rc (LHX5_rc); m=28/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.516558; -----tTAATTRs-- ; cor=; Ncor= a 0 0 0 0 0 1333.0 0.0 7142.0 7142.0 0.0 0.0 5049.0 1215.0 0 0 c 0 0 0 0 0 1483.0 160.0 28.0 0.0 0.0 0.0 0.0 3721.0 0 0 g 0 0 0 0 0 1576.0 0.0 144.0 0.0 0.0 187.0 2093.0 3420.0 0 0 t 0 0 0 0 0 2749.0 7142.0 0.0 0.0 7142.0 7142.0 0.0 394.0 0 0

MA0702.2_rc_shift5 (LMX1A_rc)
; oligos_6nt_mkv3_m41 versus MA0702.2_rc (LMX1A_rc); m=29/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.51471; -----kTAATTAr-- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0

MA0068.2_rc_shift5 (PAX4_rc)
; oligos_6nt_mkv3_m41 versus MA0068.2_rc (PAX4_rc); m=30/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.513348; -----cTAATTag-- ; cor=; Ncor= a 0 0 0 0 0 41.0 12.0 333.0 333.0 0.0 3.0 333.0 105.0 0 0 c 0 0 0 0 0 333.0 11.0 10.0 5.0 0.0 0.0 120.0 47.0 0 0 g 0 0 0 0 0 93.0 89.0 11.0 0.0 0.0 2.0 30.0 333.0 0 0 t 0 0 0 0 0 150.0 333.0 18.0 0.0 333.0 333.0 58.0 37.0 0 0

MA0900.2_shift5 (HOXA2)
; oligos_6nt_mkv3_m41 versus MA0900.2 (HOXA2); m=31/38; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.511874; -----sTMATTAs-- ; cor=; Ncor= a 0 0 0 0 0 8880.0 0.0 39674.0 56949.0 0.0 0.0 56949.0 10641.0 0 0 c 0 0 0 0 0 19452.0 3636.0 17275.0 0.0 0.0 0.0 0.0 16330.0 0 0 g 0 0 0 0 0 22686.0 0.0 290.0 0.0 0.0 0.0 2052.0 22246.0 0 0 t 0 0 0 0 0 5931.0 56949.0 0.0 0.0 56949.0 56949.0 0.0 7731.0 0 0

MA1577.1_shift5 (TLX2)
; oligos_6nt_mkv3_m41 versus MA1577.1 (TLX2); m=32/38; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.511813; -----yyAATTAr-- ; cor=; Ncor= a 0 0 0 0 0 997.0 1435.0 7799.0 7799.0 0.0 0.0 7799.0 2184.0 0 0 c 0 0 0 0 0 2572.0 7799.0 0.0 0.0 0.0 0.0 0.0 1323.0 0 0 g 0 0 0 0 0 1851.0 1112.0 80.0 0.0 0.0 0.0 0.0 3439.0 0 0 t 0 0 0 0 0 2379.0 8156.0 0.0 0.0 7799.0 7799.0 0.0 852.0 0 0

MA0848.1_shift5 (FOXO4)
; oligos_6nt_mkv3_m41 versus MA0848.1 (FOXO4); m=33/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.486055; -----GTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0

MA0850.1_shift5 (FOXP3)
; oligos_6nt_mkv3_m41 versus MA0850.1 (FOXP3); m=34/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.485925; -----rTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 c 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 g 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 t 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0

MA0042.2_shift5 (FOXI1)
; oligos_6nt_mkv3_m41 versus MA0042.2 (FOXI1); m=35/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.480296; -----GTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 c 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 g 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 t 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0

MA1607.1_shift0 (Foxl2)
; oligos_6nt_mkv3_m41 versus MA1607.1 (Foxl2); m=36/38; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.468824; rwwaTGTAAACAwr- ; cor=; Ncor= a 6235.0 5913.0 6433.0 11158.0 2985.0 2607.0 1097.0 17227.0 17212.0 17146.0 282.0 15623.0 5229.0 5143.0 0 c 3031.0 2912.0 1576.0 2051.0 896.0 367.0 301.0 558.0 336.0 216.0 15698.0 807.0 4246.0 4329.0 0 g 4621.0 3521.0 1599.0 2107.0 1371.0 14648.0 419.0 112.0 187.0 411.0 151.0 401.0 3844.0 4529.0 0 t 4214.0 5755.0 8493.0 2785.0 12849.0 479.0 16284.0 204.0 366.0 328.0 1970.0 1270.0 4782.0 4100.0 0

MA0849.1_shift5 (FOXO6)
; oligos_6nt_mkv3_m41 versus MA0849.1 (FOXO6); m=37/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.462755; -----GTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 c 0 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 g 0 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 t 0 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0

MA0847.2_shift0 (FOXD2)
; oligos_6nt_mkv3_m41 versus MA0847.2 (FOXD2); m=38/38; ncol2=13; w=9; offset=-4; strand=D; shift=0; score=0.44202; sywAwRTAAAYAw-- ; cor=; Ncor= a 1404.0 865.0 2183.0 5995.0 2482.0 2608.0 148.0 5995.0 5995.0 5995.0 0.0 5995.0 2400.0 0 0 c 1834.0 2406.0 36.0 92.0 1208.0 101.0 1005.0 658.0 209.0 0.0 5995.0 53.0 1003.0 0 0 g 2314.0 309.0 3.0 1294.0 752.0 5995.0 0.0 11.0 17.0 25.0 0.0 125.0 515.0 0 0 t 442.0 3589.0 3812.0 23.0 1553.0 6.0 5995.0 11.0 11.0 33.0 2297.0 209.0 2076.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m41_shift4 (oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41)				; oligos_6nt_mkv3_m41 (oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41); m=0 (reference); ncol1=11; shift=4; ncol=15; ----twTAAATAGmc ; Alignment reference a 0 0 0 0 49 85 28 239 226 230 10 236 21 69 61 c 0 0 0 0 49 56 11 3 12 9 11 2 14 74 78 g 0 0 0 0 46 49 16 6 11 7 3 11 195 57 58 t 0 0 0 0 112 66 201 8 7 10 232 7 26 56 59
MA1463.1_rc_shift4 (ARGFX_rc)				; oligos_6nt_mkv3_m41 versus MA1463.1_rc (ARGFX_rc); m=1/38; ncol2=10; w=10; offset=0; strand=R; shift=4; score=0.686815; ----tyTAATTAgm- ; cor=; Ncor= a 0 0 0 0 3158.0 900.0 1048.0 16589.0 16589.0 0.0 4.0 16589.0 4423.0 6479.0 0 c 0 0 0 0 2351.0 6249.0 1492.0 0.0 0.0 0.0 0.0 96.0 1748.0 4467.0 0 g 0 0 0 0 4098.0 563.0 499.0 44.0 0.0 0.0 46.0 1130.0 16589.0 1750.0 0 t 0 0 0 0 6983.0 10340.0 16589.0 0.0 0.0 16589.0 16589.0 270.0 2558.0 3893.0 0
MA0773.1_shift2 (MEF2D)				; oligos_6nt_mkv3_m41 versus MA0773.1 (MEF2D); m=2/38; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.673613; --dCTAwAAATAGm- ; cor=; Ncor= a 0 0 2120.0 28.0 3.0 5803.0 2782.0 5803.0 5803.0 5803.0 0.0 5803.0 339.0 3206.0 0 c 0 0 109.0 5803.0 22.0 8.0 0.0 4.0 0.0 2.0 0.0 0.0 17.0 2598.0 0 g 0 0 1933.0 0.0 0.0 2.0 2.0 0.0 2.0 1.0 0.0 4.0 5803.0 70.0 0 t 0 0 1642.0 53.0 5803.0 6.0 3021.0 778.0 217.0 69.0 5803.0 0.0 5.0 585.0 0
MA0660.1_shift2 (MEF2B)				; oligos_6nt_mkv3_m41 versus MA0660.1 (MEF2B); m=3/38; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.669785; --rCTAwAAATAGm- ; cor=; Ncor= a 0 0 1385.0 18.0 0.0 3150.0 1495.0 3150.0 3150.0 3150.0 0.0 3150.0 98.0 1013.0 0 c 0 0 72.0 3150.0 25.0 0.0 2.0 0.0 3.0 0.0 0.0 3.0 19.0 2138.0 0 g 0 0 1766.0 0.0 0.0 0.0 0.0 12.0 2.0 0.0 0.0 2.0 3150.0 99.0 0 t 0 0 505.0 12.0 3150.0 15.0 1655.0 710.0 143.0 45.0 3150.0 3.0 3.0 506.0 0
MA0886.1_shift4 (EMX2)				; oligos_6nt_mkv3_m41 versus MA0886.1 (EMX2); m=4/38; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.649067; ----rsTAATTAgs- ; cor=; Ncor= a 0 0 0 0 10479.0 5704.0 834.0 37262.0 37262.0 0.0 0.0 37262.0 9139.0 5970.0 0 c 0 0 0 0 8412.0 13337.0 7761.0 4938.0 0.0 0.0 0.0 0.0 7124.0 13054.0 0 g 0 0 0 0 12802.0 10582.0 0.0 678.0 0.0 0.0 4025.0 0.0 17672.0 10195.0 0 t 0 0 0 0 5569.0 7639.0 29501.0 1236.0 0.0 37262.0 37262.0 0.0 3328.0 8043.0 0
MA0658.1_shift4 (LHX6)				; oligos_6nt_mkv3_m41 versus MA0658.1 (LHX6); m=5/38; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.641376; ----rcTAATTAry- ; cor=; Ncor= a 0 0 0 0 1857.0 529.0 0.0 4438.0 4438.0 0.0 0.0 4438.0 1668.0 548.0 0 c 0 0 0 0 769.0 3015.0 253.0 90.0 14.0 98.0 766.0 0.0 637.0 1654.0 0 g 0 0 0 0 1548.0 791.0 28.0 487.0 0.0 15.0 108.0 243.0 2769.0 728.0 0 t 0 0 0 0 264.0 1422.0 4438.0 0.0 0.0 4438.0 4438.0 2.0 194.0 1507.0 0
MA0628.1_shift4 (POU6F1)				; oligos_6nt_mkv3_m41 versus MA0628.1 (POU6F1); m=6/38; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.637135; ----ayTAATTArt- ; cor=; Ncor= a 0 0 0 0 507.0 151.0 32.0 905.0 938.0 14.0 18.0 950.0 353.0 89.0 0 c 0 0 0 0 193.0 351.0 10.0 70.0 34.0 14.0 8.0 8.0 145.0 211.0 0 g 0 0 0 0 211.0 145.0 8.0 8.0 14.0 34.0 70.0 10.0 351.0 193.0 0 t 0 0 0 0 89.0 353.0 950.0 18.0 14.0 938.0 905.0 32.0 151.0 507.0 0
MA0621.1_shift3 (mix-a)				; oligos_6nt_mkv3_m41 versus MA0621.1 (mix-a); m=7/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.613248; ---artTAATTAgk- ; cor=; Ncor= a 0 0 0 312.0 345.0 130.0 0.0 1000.0 1000.0 0.0 0.0 938.0 228.0 205.0 0 c 0 0 0 229.0 150.0 146.0 0.0 0.0 0.0 0.0 0.0 21.0 100.0 205.0 0 g 0 0 0 229.0 261.0 46.0 0.0 0.0 0.0 0.0 0.0 21.0 488.0 290.0 0 t 0 0 0 229.0 244.0 679.0 1000.0 0.0 0.0 1000.0 1000.0 21.0 184.0 301.0 0
MA0497.1_shift0 (MEF2C)				; oligos_6nt_mkv3_m41 versus MA0497.1 (MEF2C); m=8/38; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.61324; rdkcyAAAAATAGmw ; cor=; Ncor= a 705.0 733.0 431.0 382.0 0.0 1616.0 1706.0 2107.0 2131.0 2135.0 56.0 2177.0 389.0 975.0 1009.0 c 321.0 151.0 196.0 1412.0 985.0 256.0 32.0 0.0 0.0 0.0 62.0 0.0 120.0 836.0 450.0 g 676.0 573.0 822.0 78.0 0.0 74.0 241.0 87.0 2.0 4.0 0.0 32.0 1671.0 148.0 126.0 t 507.0 752.0 760.0 337.0 1224.0 263.0 230.0 15.0 76.0 70.0 2091.0 0.0 29.0 250.0 624.0
MA1606.1_shift3 (Foxf1)				; oligos_6nt_mkv3_m41 versus MA1606.1 (Foxf1); m=9/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.608106; ---awrTAAACAaa- ; cor=; Ncor= a 0 0 0 23159.0 17275.0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 18673.0 20323.0 0 c 0 0 0 10753.0 7560.0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 12643.0 11715.0 0 g 0 0 0 12462.0 8287.0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 14294.0 12844.0 0 t 0 0 0 13166.0 26418.0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 13930.0 14658.0 0
MA0052.4_shift1 (MEF2A)				; oligos_6nt_mkv3_m41 versus MA0052.4 (MEF2A); m=10/38; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=0.607581; -wkcTAAAAATAGaw ; cor=; Ncor= a 0 5075.0 4033.0 1984.0 627.0 12437.0 13132.0 14680.0 14453.0 14956.0 441.0 15582.0 2566.0 7709.0 6171.0 c 0 2119.0 1960.0 10919.0 2974.0 1013.0 253.0 141.0 231.0 173.0 349.0 50.0 1060.0 4039.0 3523.0 g 0 3651.0 4493.0 1007.0 236.0 1066.0 610.0 506.0 241.0 202.0 215.0 422.0 11104.0 1605.0 1810.0 t 0 5317.0 5676.0 2252.0 12325.0 1646.0 2167.0 835.0 1237.0 831.0 15157.0 108.0 1432.0 2809.0 4658.0
MA0047.3_shift3 (FOXA2)				; oligos_6nt_mkv3_m41 versus MA0047.3 (FOXA2); m=11/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.600902; ---awGTAAACAww- ; cor=; Ncor= a 0 0 0 112241.0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 76950.0 85410.0 0 c 0 0 0 34080.0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 50576.0 53633.0 0 g 0 0 0 63806.0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 50527.0 56632.0 0 t 0 0 0 52026.0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 84100.0 66478.0 0
MA1683.1_shift3 (FOXA3)				; oligos_6nt_mkv3_m41 versus MA1683.1 (FOXA3); m=12/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.599094; ---rwGTAAACAww- ; cor=; Ncor= a 0 0 0 18375.0 16693.0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 13442.0 14902.0 0 c 0 0 0 8520.0 3627.0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 9975.0 9884.0 0 g 0 0 0 12744.0 9296.0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 11451.0 11103.0 0 t 0 0 0 9298.0 19321.0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 14069.0 13048.0 0
MA0481.3_shift3 (FOXP1)				; oligos_6nt_mkv3_m41 versus MA0481.3 (FOXP1); m=13/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.595313; ---awGTAAACAww- ; cor=; Ncor= a 0 0 0 26982.0 26879.0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 20210.0 25974.0 0 c 0 0 0 13908.0 6209.0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 17235.0 14312.0 0 g 0 0 0 16635.0 14136.0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 15846.0 12809.0 0 t 0 0 0 17193.0 27494.0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 21427.0 21623.0 0
MA1103.2_shift3 (FOXK2)				; oligos_6nt_mkv3_m41 versus MA1103.2 (FOXK2); m=14/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.593312; ---awGTAAACAar- ; cor=; Ncor= a 0 0 0 6548.0 4861.0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 4836.0 4855.0 0 c 0 0 0 2872.0 2198.0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 3877.0 3788.0 0 g 0 0 0 3471.0 3423.0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 3950.0 5012.0 0 t 0 0 0 3788.0 6197.0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 4016.0 3024.0 0
MA0593.1_shift3 (FOXP2)				; oligos_6nt_mkv3_m41 versus MA0593.1 (FOXP2); m=15/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.584065; ---awGTAAACAra- ; cor=; Ncor= a 0 0 0 330.0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 332.0 0 c 0 0 0 113.0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 124.0 0 g 0 0 0 190.0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 184.0 0 t 0 0 0 133.0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 126.0 0
MA0618.1_shift5 (LBX1)				; oligos_6nt_mkv3_m41 versus MA0618.1 (LBX1); m=16/38; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.564949; -----tTAAYTRG-- ; cor=; Ncor= a 0 0 0 0 0 217.0 0.0 999.0 999.0 0.0 143.0 731.0 29.0 0 0 c 0 0 0 0 0 131.0 49.0 0.0 0.0 262.0 0.0 0.0 114.0 0 0 g 0 0 0 0 0 174.0 0.0 0.0 0.0 0.0 119.0 268.0 799.0 0 0 t 0 0 0 0 0 478.0 951.0 0.0 0.0 738.0 738.0 0.0 57.0 0 0
MA0846.1_shift2 (FOXC2)				; oligos_6nt_mkv3_m41 versus MA0846.1 (FOXC2); m=17/38; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.545705; --wAwrTAAAYAww- ; cor=; Ncor= a 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 10995.0 0 c 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 3080.0 0 g 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 2649.0 0 t 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 9461.0 0
MA0726.1_rc_shift5 (VSX2_rc)				; oligos_6nt_mkv3_m41 versus MA0726.1_rc (VSX2_rc); m=18/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.543993; -----cTAATTAr-- ; cor=; Ncor= a 0 0 0 0 0 3387.0 1014.0 13809.0 13809.0 63.0 402.0 13809.0 4255.0 0 0 c 0 0 0 0 0 4288.0 2109.0 447.0 92.0 123.0 343.0 363.0 445.0 0 0 g 0 0 0 0 0 3243.0 321.0 567.0 186.0 124.0 397.0 2725.0 9554.0 0 0 t 0 0 0 0 0 2891.0 13809.0 626.0 118.0 13809.0 13809.0 1080.0 427.0 0 0
MA0845.1_shift2 (FOXB1)				; oligos_6nt_mkv3_m41 versus MA0845.1 (FOXB1); m=19/38; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.541991; --wAwGTMAAyAt-- ; cor=; Ncor= a 0 0 2393.0 5343.0 1983.0 1159.0 180.0 4891.0 6841.0 6841.0 28.0 6841.0 1704.0 0 0 c 0 0 272.0 263.0 218.0 54.0 240.0 1950.0 213.0 47.0 2252.0 0.0 573.0 0 0 g 0 0 190.0 1498.0 409.0 6841.0 113.0 75.0 0.0 47.0 104.0 157.0 556.0 0 0 t 0 0 4448.0 561.0 4858.0 124.0 6841.0 73.0 381.0 216.0 4589.0 147.0 4008.0 0 0
MA0075.3_rc_shift5 (PRRX2_rc)				; oligos_6nt_mkv3_m41 versus MA0075.3_rc (PRRX2_rc); m=20/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.540665; -----yTAATTrg-- ; cor=; Ncor= a 0 0 0 0 0 1295.0 0.0 6720.0 6720.0 0.0 0.0 4711.0 1933.0 0 0 c 0 0 0 0 0 1862.0 399.0 0.0 0.0 0.0 3.0 131.0 1613.0 0 0 g 0 0 0 0 0 1271.0 1.0 0.0 0.0 0.0 29.0 2008.0 6720.0 0 0 t 0 0 0 0 0 2291.0 6720.0 0.0 0.0 6720.0 6720.0 122.0 778.0 0 0
MA0701.2_rc_shift5 (LHX9_rc)				; oligos_6nt_mkv3_m41 versus MA0701.2_rc (LHX9_rc); m=21/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.535162; -----yTAATTrG-- ; cor=; Ncor= a 0 0 0 0 0 856.0 0.0 6075.0 6075.0 0.0 20.0 3983.0 1219.0 0 0 c 0 0 0 0 0 1946.0 305.0 170.0 0.0 0.0 0.0 0.0 1056.0 0 0 g 0 0 0 0 0 1013.0 0.0 0.0 0.0 0.0 505.0 2093.0 6075.0 0 0 t 0 0 0 0 0 2261.0 6075.0 0.0 0.0 6075.0 6075.0 0.0 390.0 0 0
MA0032.2_shift2 (FOXC1)				; oligos_6nt_mkv3_m41 versus MA0032.2 (FOXC1); m=22/38; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.534116; --wAwRTMAAyAw-- ; cor=; Ncor= a 0 0 6452.0 14324.0 7893.0 4858.0 2496.0 13117.0 18489.0 18489.0 122.0 18489.0 6702.0 0 0 c 0 0 772.0 728.0 2008.0 336.0 1652.0 5372.0 108.0 56.0 8782.0 27.0 1558.0 0 0 g 0 0 304.0 4165.0 2422.0 13631.0 390.0 21.0 0.0 141.0 165.0 433.0 1107.0 0 0 t 0 0 12038.0 1386.0 10596.0 51.0 18489.0 45.0 57.0 112.0 9708.0 184.0 11787.0 0 0
MA0912.2_rc_shift5 (HOXD3_rc)				; oligos_6nt_mkv3_m41 versus MA0912.2_rc (HOXD3_rc); m=23/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.532003; -----gTAATTAG-- ; cor=; Ncor= a 0 0 0 0 0 1674.0 0.0 14562.0 14562.0 0.0 0.0 14562.0 2947.0 0 0 c 0 0 0 0 0 3187.0 2198.0 4453.0 0.0 0.0 0.0 0.0 827.0 0 0 g 0 0 0 0 0 8987.0 0.0 0.0 0.0 0.0 742.0 94.0 11615.0 0 0 t 0 0 0 0 0 714.0 14562.0 0.0 0.0 14562.0 14562.0 0.0 276.0 0 0
MA0612.2_shift5 (EMX1)				; oligos_6nt_mkv3_m41 versus MA0612.2 (EMX1); m=24/38; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.529147; -----sTAATTAs-- ; cor=; Ncor= a 0 0 0 0 0 1276.0 19.0 9544.0 9544.0 0.0 0.0 9544.0 1333.0 0 0 c 0 0 0 0 0 3425.0 2263.0 1235.0 0.0 0.0 0.0 0.0 2633.0 0 0 g 0 0 0 0 0 3066.0 0.0 0.0 0.0 0.0 933.0 0.0 4516.0 0 0 t 0 0 0 0 0 1777.0 7281.0 0.0 0.0 9544.0 9544.0 0.0 1062.0 0 0
MA0725.1_rc_shift5 (VSX1_rc)				; oligos_6nt_mkv3_m41 versus MA0725.1_rc (VSX1_rc); m=25/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.525712; -----vTAATTAr-- ; cor=; Ncor= a 0 0 0 0 0 3732.0 1372.0 13572.0 13572.0 90.0 554.0 13572.0 5119.0 0 0 c 0 0 0 0 0 3658.0 3337.0 984.0 103.0 172.0 553.0 572.0 561.0 0 0 g 0 0 0 0 0 3555.0 516.0 761.0 199.0 154.0 626.0 3131.0 8453.0 0 0 t 0 0 0 0 0 2626.0 13572.0 898.0 172.0 13572.0 13572.0 1836.0 756.0 0 0
MA0033.2_shift5 (FOXL1)				; oligos_6nt_mkv3_m41 versus MA0033.2 (FOXL1); m=26/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.521264; -----rTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 c 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 g 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 t 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0
MA0108.2_shift3 (TBP)				; oligos_6nt_mkv3_m41 versus MA0108.2 (TBP); m=27/38; ncol2=15; w=11; offset=-1; strand=D; shift=3; score=0.517077; ---sTATAWAwrsss ; cor=; Ncor= a 0 0 0 61.0 16.0 352.0 3.0 354.0 268.0 360.0 222.0 155.0 56.0 83.0 82.0 c 0 0 0 145.0 46.0 0.0 10.0 0.0 0.0 3.0 2.0 44.0 135.0 147.0 127.0 g 0 0 0 152.0 18.0 2.0 2.0 5.0 0.0 20.0 44.0 157.0 150.0 128.0 128.0 t 0 0 0 31.0 309.0 35.0 374.0 30.0 121.0 6.0 121.0 33.0 48.0 31.0 52.0
MA1519.1_rc_shift5 (LHX5_rc)				; oligos_6nt_mkv3_m41 versus MA1519.1_rc (LHX5_rc); m=28/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.516558; -----tTAATTRs-- ; cor=; Ncor= a 0 0 0 0 0 1333.0 0.0 7142.0 7142.0 0.0 0.0 5049.0 1215.0 0 0 c 0 0 0 0 0 1483.0 160.0 28.0 0.0 0.0 0.0 0.0 3721.0 0 0 g 0 0 0 0 0 1576.0 0.0 144.0 0.0 0.0 187.0 2093.0 3420.0 0 0 t 0 0 0 0 0 2749.0 7142.0 0.0 0.0 7142.0 7142.0 0.0 394.0 0 0
MA0702.2_rc_shift5 (LMX1A_rc)				; oligos_6nt_mkv3_m41 versus MA0702.2_rc (LMX1A_rc); m=29/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.51471; -----kTAATTAr-- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0
MA0068.2_rc_shift5 (PAX4_rc)				; oligos_6nt_mkv3_m41 versus MA0068.2_rc (PAX4_rc); m=30/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.513348; -----cTAATTag-- ; cor=; Ncor= a 0 0 0 0 0 41.0 12.0 333.0 333.0 0.0 3.0 333.0 105.0 0 0 c 0 0 0 0 0 333.0 11.0 10.0 5.0 0.0 0.0 120.0 47.0 0 0 g 0 0 0 0 0 93.0 89.0 11.0 0.0 0.0 2.0 30.0 333.0 0 0 t 0 0 0 0 0 150.0 333.0 18.0 0.0 333.0 333.0 58.0 37.0 0 0
MA0900.2_shift5 (HOXA2)				; oligos_6nt_mkv3_m41 versus MA0900.2 (HOXA2); m=31/38; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.511874; -----sTMATTAs-- ; cor=; Ncor= a 0 0 0 0 0 8880.0 0.0 39674.0 56949.0 0.0 0.0 56949.0 10641.0 0 0 c 0 0 0 0 0 19452.0 3636.0 17275.0 0.0 0.0 0.0 0.0 16330.0 0 0 g 0 0 0 0 0 22686.0 0.0 290.0 0.0 0.0 0.0 2052.0 22246.0 0 0 t 0 0 0 0 0 5931.0 56949.0 0.0 0.0 56949.0 56949.0 0.0 7731.0 0 0
MA1577.1_shift5 (TLX2)				; oligos_6nt_mkv3_m41 versus MA1577.1 (TLX2); m=32/38; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.511813; -----yyAATTAr-- ; cor=; Ncor= a 0 0 0 0 0 997.0 1435.0 7799.0 7799.0 0.0 0.0 7799.0 2184.0 0 0 c 0 0 0 0 0 2572.0 7799.0 0.0 0.0 0.0 0.0 0.0 1323.0 0 0 g 0 0 0 0 0 1851.0 1112.0 80.0 0.0 0.0 0.0 0.0 3439.0 0 0 t 0 0 0 0 0 2379.0 8156.0 0.0 0.0 7799.0 7799.0 0.0 852.0 0 0
MA0848.1_shift5 (FOXO4)				; oligos_6nt_mkv3_m41 versus MA0848.1 (FOXO4); m=33/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.486055; -----GTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0
MA0850.1_shift5 (FOXP3)				; oligos_6nt_mkv3_m41 versus MA0850.1 (FOXP3); m=34/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.485925; -----rTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 c 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 g 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 t 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0
MA0042.2_shift5 (FOXI1)				; oligos_6nt_mkv3_m41 versus MA0042.2 (FOXI1); m=35/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.480296; -----GTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 c 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 g 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 t 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0
MA1607.1_shift0 (Foxl2)				; oligos_6nt_mkv3_m41 versus MA1607.1 (Foxl2); m=36/38; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.468824; rwwaTGTAAACAwr- ; cor=; Ncor= a 6235.0 5913.0 6433.0 11158.0 2985.0 2607.0 1097.0 17227.0 17212.0 17146.0 282.0 15623.0 5229.0 5143.0 0 c 3031.0 2912.0 1576.0 2051.0 896.0 367.0 301.0 558.0 336.0 216.0 15698.0 807.0 4246.0 4329.0 0 g 4621.0 3521.0 1599.0 2107.0 1371.0 14648.0 419.0 112.0 187.0 411.0 151.0 401.0 3844.0 4529.0 0 t 4214.0 5755.0 8493.0 2785.0 12849.0 479.0 16284.0 204.0 366.0 328.0 1970.0 1270.0 4782.0 4100.0 0
MA0849.1_shift5 (FOXO6)				; oligos_6nt_mkv3_m41 versus MA0849.1 (FOXO6); m=37/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.462755; -----GTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 c 0 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 g 0 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 t 0 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0
MA0847.2_shift0 (FOXD2)				; oligos_6nt_mkv3_m41 versus MA0847.2 (FOXD2); m=38/38; ncol2=13; w=9; offset=-4; strand=D; shift=0; score=0.44202; sywAwRTAAAYAw-- ; cor=; Ncor= a 1404.0 865.0 2183.0 5995.0 2482.0 2608.0 148.0 5995.0 5995.0 5995.0 0.0 5995.0 2400.0 0 0 c 1834.0 2406.0 36.0 92.0 1208.0 101.0 1005.0 658.0 209.0 0.0 5995.0 53.0 1003.0 0 0 g 2314.0 309.0 3.0 1294.0 752.0 5995.0 0.0 11.0 17.0 25.0 0.0 125.0 515.0 0 0 t 442.0 3589.0 3812.0 23.0 1553.0 6.0 5995.0 11.0 11.0 33.0 2297.0 209.0 2076.0 0 0