Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m42/peak-motifs_oligos_6nt_mkv3_m42_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m42/peak-motifs_oligos_6nt_mkv3_m42.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m42/peak-motifs_oligos_6nt_mkv3_m42_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m42/peak-motifs_oligos_6nt_mkv3_m42.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m42/peak-motifs_oligos_6nt_mkv3_m42_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m42/peak-motifs_oligos_6nt_mkv3_m42_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m42/peak-motifs_oligos_6nt_mkv3_m42_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m42/peak-motifs_oligos_6nt_mkv3_m42_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m42/peak-motifs_oligos_6nt_mkv3_m42_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m42/peak-motifs_oligos_6nt_mkv3_m42_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m42/peak-motifs_oligos_6nt_mkv3_m42.tf
		file1	1	10	471
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m42 MA0671.1 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 NFIX 0.827 0.744 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6nt_mkv3_m42 MA0670.1 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 NFIA 0.802 0.656 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv3_m42 MA0739.1 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 Hic1 0.897 0.653 10 9 8 11 0.7273 0.8000 0.8889 D 2
oligos_6nt_mkv3_m42 MA0809.2 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 TEAD4 0.725 0.604 10 12 10 12 0.8333 1.0000 0.8333 D -2
oligos_6nt_mkv3_m42 MA0738.1 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 HIC2 0.797 0.580 10 9 8 11 0.7273 0.8000 0.8889 D 2
oligos_6nt_mkv3_m42 MA0808.1 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 TEAD3 0.724 0.579 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv3_m42 MA0161.2 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 NFIC 0.758 0.568 10 11 9 12 0.7500 0.9000 0.8182 R 1
oligos_6nt_mkv3_m42 MA0090.3 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 TEAD1 0.720 0.554 10 13 10 13 0.7692 1.0000 0.7692 D -2
oligos_6nt_mkv3_m42 MA1527.1 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 NFIC(var.2) 0.869 0.511 10 17 10 17 0.5882 1.0000 0.5882 D -7
oligos_6nt_mkv3_m42 MA1528.1 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 NFIX(var.2) 0.867 0.510 10 17 10 17 0.5882 1.0000 0.5882 D -7
oligos_6nt_mkv3_m42 MA0092.1 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 Hand1::Tcf3 0.757 0.504 10 10 8 12 0.6667 0.8000 0.8000 R 2
oligos_6nt_mkv3_m42 MA0119.1 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 NFIC::TLX1 0.802 0.481 10 14 9 15 0.6000 0.9000 0.6429 D -5
oligos_6nt_mkv3_m42 MA1643.1 oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42 NFIB 0.874 0.416 10 21 10 21 0.4762 1.0000 0.4762 R -9 
 Host name	pedagogix
 Job started	2020-04-13.225022
 Job done	2020-04-13.225048
 Seconds	4.41
	user	4.41
	system	0.46
	cuser	20.28
;	csystem	0.95