One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m47/peak-motifs_oligos_6nt_mkv3_m47.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m47/peak-motifs_oligos_6nt_mkv3_m47_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m47_shift3 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m47_shift3 (oligos_6nt_mkv3_m47oligos_6nt_mkv3_m47)
; oligos_6nt_mkv3_m47 (oligos_6nt_mkv3_m47oligos_6nt_mkv3_m47); m=0 (reference); ncol1=10; shift=3; ncol=16; ---aCACACACAc--- ; Alignment reference a 0 0 0 748 89 1176 0 1175 0 1173 0 825 107 0 0 0 c 0 0 0 160 876 0 1175 0 1176 0 1176 153 736 0 0 0 g 0 0 0 165 119 0 0 1 0 3 0 63 186 0 0 0 t 0 0 0 103 92 0 1 0 0 0 0 135 147 0 0 0

MA1511.1_shift2 (KLF10)
; oligos_6nt_mkv3_m47 versus MA1511.1 (KLF10); m=1/6; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.648565; --gmCACrCCCmy--- ; cor=; Ncor= a 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 c 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 g 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 t 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0

MA0493.1_shift1 (Klf1)
; oligos_6nt_mkv3_m47 versus MA0493.1 (Klf1); m=2/6; ncol2=11; w=9; offset=-2; strand=D; shift=1; score=0.527673; -rrCCACACCCw---- ; cor=; Ncor= a 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 c 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 g 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0

MA1523.1_shift1 (MSANTD3)
; oligos_6nt_mkv3_m47 versus MA1523.1 (MSANTD3); m=3/6; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.487635; -stmCACTCAm----- ; cor=; Ncor= a 0 98.0 111.0 332.0 64.0 980.0 31.0 37.0 47.0 775.0 271.0 0 0 0 0 0 c 0 269.0 211.0 272.0 723.0 0.0 896.0 7.0 862.0 140.0 568.0 0 0 0 0 0 g 0 515.0 220.0 249.0 31.0 2.0 27.0 0.0 29.0 24.0 63.0 0 0 0 0 0 t 0 117.0 456.0 145.0 180.0 16.0 45.0 954.0 60.0 59.0 96.0 0 0 0 0 0

MA1107.2_shift0 (KLF9)
; oligos_6nt_mkv3_m47 versus MA1107.2 (KLF9); m=4/6; ncol2=16; w=10; offset=-3; strand=D; shift=0; score=0.487007; crgCCACACCCAChyc ; cor=; Ncor= a 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 c 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 g 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 t 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0

MA1155.1_shift2 (ZSCAN4)
; oligos_6nt_mkv3_m47 versus MA1155.1 (ZSCAN4); m=5/6; ncol2=15; w=10; offset=-1; strand=D; shift=2; score=0.480325; --tGCACACmCTGaAA ; cor=; Ncor= a 0 0 257.0 290.0 0.0 1292.0 0.0 1281.0 3.0 772.0 7.0 8.0 3.0 1118.0 1225.0 1269.0 c 0 0 383.0 2.0 1676.0 0.0 1665.0 0.0 1702.0 374.0 1684.0 11.0 50.0 107.0 279.0 0.0 g 0 0 112.0 1737.0 1.0 0.0 0.0 2.0 0.0 320.0 0.0 75.0 1873.0 230.0 0.0 2.0 t 0 0 1373.0 0.0 0.0 2.0 0.0 2.0 73.0 8.0 2.0 1699.0 218.0 362.0 6.0 1.0

MA0006.1_rc_shift6 (Ahr::Arnt_rc)
; oligos_6nt_mkv3_m47 versus MA0006.1_rc (Ahr::Arnt_rc); m=6/6; ncol2=6; w=6; offset=3; strand=R; shift=6; score=0.44526; ------CACGCr---- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 0 0 0 c 0 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 0 0 0 g 0 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 0 0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m47_shift3 (oligos_6nt_mkv3_m47oligos_6nt_mkv3_m47)				; oligos_6nt_mkv3_m47 (oligos_6nt_mkv3_m47oligos_6nt_mkv3_m47); m=0 (reference); ncol1=10; shift=3; ncol=16; ---aCACACACAc--- ; Alignment reference a 0 0 0 748 89 1176 0 1175 0 1173 0 825 107 0 0 0 c 0 0 0 160 876 0 1175 0 1176 0 1176 153 736 0 0 0 g 0 0 0 165 119 0 0 1 0 3 0 63 186 0 0 0 t 0 0 0 103 92 0 1 0 0 0 0 135 147 0 0 0
MA1511.1_shift2 (KLF10)				; oligos_6nt_mkv3_m47 versus MA1511.1 (KLF10); m=1/6; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.648565; --gmCACrCCCmy--- ; cor=; Ncor= a 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 c 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 g 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 t 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0
MA0493.1_shift1 (Klf1)				; oligos_6nt_mkv3_m47 versus MA0493.1 (Klf1); m=2/6; ncol2=11; w=9; offset=-2; strand=D; shift=1; score=0.527673; -rrCCACACCCw---- ; cor=; Ncor= a 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 c 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 g 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0
MA1523.1_shift1 (MSANTD3)				; oligos_6nt_mkv3_m47 versus MA1523.1 (MSANTD3); m=3/6; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.487635; -stmCACTCAm----- ; cor=; Ncor= a 0 98.0 111.0 332.0 64.0 980.0 31.0 37.0 47.0 775.0 271.0 0 0 0 0 0 c 0 269.0 211.0 272.0 723.0 0.0 896.0 7.0 862.0 140.0 568.0 0 0 0 0 0 g 0 515.0 220.0 249.0 31.0 2.0 27.0 0.0 29.0 24.0 63.0 0 0 0 0 0 t 0 117.0 456.0 145.0 180.0 16.0 45.0 954.0 60.0 59.0 96.0 0 0 0 0 0
MA1107.2_shift0 (KLF9)				; oligos_6nt_mkv3_m47 versus MA1107.2 (KLF9); m=4/6; ncol2=16; w=10; offset=-3; strand=D; shift=0; score=0.487007; crgCCACACCCAChyc ; cor=; Ncor= a 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 c 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 g 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 t 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0
MA1155.1_shift2 (ZSCAN4)				; oligos_6nt_mkv3_m47 versus MA1155.1 (ZSCAN4); m=5/6; ncol2=15; w=10; offset=-1; strand=D; shift=2; score=0.480325; --tGCACACmCTGaAA ; cor=; Ncor= a 0 0 257.0 290.0 0.0 1292.0 0.0 1281.0 3.0 772.0 7.0 8.0 3.0 1118.0 1225.0 1269.0 c 0 0 383.0 2.0 1676.0 0.0 1665.0 0.0 1702.0 374.0 1684.0 11.0 50.0 107.0 279.0 0.0 g 0 0 112.0 1737.0 1.0 0.0 0.0 2.0 0.0 320.0 0.0 75.0 1873.0 230.0 0.0 2.0 t 0 0 1373.0 0.0 0.0 2.0 0.0 2.0 73.0 8.0 2.0 1699.0 218.0 362.0 6.0 1.0
MA0006.1_rc_shift6 (Ahr::Arnt_rc)				; oligos_6nt_mkv3_m47 versus MA0006.1_rc (Ahr::Arnt_rc); m=6/6; ncol2=6; w=6; offset=3; strand=R; shift=6; score=0.44526; ------CACGCr---- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 0 0 0 c 0 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 0 0 0 g 0 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 0 0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0