Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf
		file1	1	18	15
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m5 MA1622.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 Smad2::Smad3 0.778 0.605 18 14 14 18 0.7778 0.7778 1.0000 D 3
oligos_6nt_mkv3_m5 MA0591.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 Bach1::Mafk 0.710 0.592 18 15 15 18 0.8333 0.8333 1.0000 D 3
oligos_6nt_mkv3_m5 MA0489.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 JUN(var.2) 0.754 0.587 18 14 14 18 0.7778 0.7778 1.0000 D 1
oligos_6nt_mkv3_m5 MA0150.2 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 Nfe2l2 0.703 0.586 18 15 15 18 0.8333 0.8333 1.0000 D 2
oligos_6nt_mkv3_m5 MA0089.2 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 NFE2L1 0.721 0.569 18 16 15 19 0.7895 0.8333 0.9375 D 3
oligos_6nt_mkv3_m5 MA1633.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 BACH1 0.787 0.568 18 13 13 18 0.7222 0.7222 1.0000 D 5
oligos_6nt_mkv3_m5 MA1141.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOS::JUND 0.759 0.548 18 13 13 18 0.7222 0.7222 1.0000 R 4
oligos_6nt_mkv3_m5 MA1128.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOSL1::JUN 0.756 0.546 18 13 13 18 0.7222 0.7222 1.0000 D 4
oligos_6nt_mkv3_m5 MA1137.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOSL1::JUNB 0.755 0.546 18 13 13 18 0.7222 0.7222 1.0000 D 4
oligos_6nt_mkv3_m5 MA0477.2 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOSL1 0.750 0.541 18 13 13 18 0.7222 0.7222 1.0000 D 4
oligos_6nt_mkv3_m5 MA0496.3 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 MAFK 0.733 0.540 18 15 14 19 0.7368 0.7778 0.9333 D 4
oligos_6nt_mkv3_m5 MA0490.2 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 JUNB 0.726 0.524 18 13 13 18 0.7222 0.7222 1.0000 D 4
oligos_6nt_mkv3_m5 MA0491.2 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 JUND 0.724 0.523 18 13 13 18 0.7222 0.7222 1.0000 D 4
oligos_6nt_mkv3_m5 MA1130.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOSL2::JUN 0.774 0.516 18 12 12 18 0.6667 0.6667 1.0000 R 5
oligos_6nt_mkv3_m5 MA0478.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOSL2 0.833 0.509 18 11 11 18 0.6111 0.6111 1.0000 D 4
oligos_6nt_mkv3_m5 MA1634.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 BATF 0.813 0.497 18 11 11 18 0.6111 0.6111 1.0000 D 5
oligos_6nt_mkv3_m5 MA0462.2 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 BATF::JUN 0.811 0.496 18 11 11 18 0.6111 0.6111 1.0000 D 5
oligos_6nt_mkv3_m5 MA1134.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOS::JUNB 0.743 0.496 18 12 12 18 0.6667 0.6667 1.0000 R 4
oligos_6nt_mkv3_m5 MA0835.2 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 BATF3 0.809 0.494 18 11 11 18 0.6111 0.6111 1.0000 D 5
oligos_6nt_mkv3_m5 MA0476.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOS 0.779 0.476 18 11 11 18 0.6111 0.6111 1.0000 R 5
oligos_6nt_mkv3_m5 MA0501.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 MAF::NFE2 0.784 0.448 18 15 12 21 0.5714 0.6667 0.8000 D 6
oligos_6nt_mkv3_m5 MA1142.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOSL1::JUND 0.800 0.444 18 10 10 18 0.5556 0.5556 1.0000 D 5
oligos_6nt_mkv3_m5 MA0099.3 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOS::JUN 0.791 0.439 18 10 10 18 0.5556 0.5556 1.0000 R 5
oligos_6nt_mkv3_m5 MA1138.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOSL2::JUNB 0.775 0.431 18 10 10 18 0.5556 0.5556 1.0000 D 5
oligos_6nt_mkv3_m5 MA1135.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOSB::JUNB 0.775 0.431 18 10 10 18 0.5556 0.5556 1.0000 D 5
oligos_6nt_mkv3_m5 MA1144.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 FOSL2::JUND 0.772 0.429 18 10 10 18 0.5556 0.5556 1.0000 D 5
oligos_6nt_mkv3_m5 MA1132.1 oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5 JUN::JUNB 0.749 0.416 18 10 10 18 0.5556 0.5556 1.0000 D 5 
 Host name	pedagogix
 Job started	2020-04-13.224011
 Job done	2020-04-13.224046
 Seconds	5.21
	user	5.21
	system	0.64
	cuser	27.23
;	csystem	1.55