Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m50/peak-motifs_oligos_6nt_mkv3_m50_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m50/peak-motifs_oligos_6nt_mkv3_m50.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m50/peak-motifs_oligos_6nt_mkv3_m50_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m50/peak-motifs_oligos_6nt_mkv3_m50.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m50/peak-motifs_oligos_6nt_mkv3_m50_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m50/peak-motifs_oligos_6nt_mkv3_m50_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m50/peak-motifs_oligos_6nt_mkv3_m50_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m50/peak-motifs_oligos_6nt_mkv3_m50_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m50/peak-motifs_oligos_6nt_mkv3_m50_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m50/peak-motifs_oligos_6nt_mkv3_m50_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m50/peak-motifs_oligos_6nt_mkv3_m50.tf
		file1	1	10	179
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m50 MA1115.1 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 POU5F1 0.885 0.804 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_6nt_mkv3_m50 MA0019.1 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 Ddit3::Cebpa 0.842 0.701 10 12 10 12 0.8333 1.0000 0.8333 D 0
oligos_6nt_mkv3_m50 MA0792.1 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 POU5F1B 0.760 0.684 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6nt_mkv3_m50 MA0789.1 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 POU3F4 0.736 0.663 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6nt_mkv3_m50 MA0627.2 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 POU2F3 0.834 0.641 10 13 10 13 0.7692 1.0000 0.7692 D -1
oligos_6nt_mkv3_m50 MA0507.1 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 POU2F2 0.832 0.640 10 13 10 13 0.7692 1.0000 0.7692 R 0
oligos_6nt_mkv3_m50 MA0785.1 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 POU2F1 0.746 0.622 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6nt_mkv3_m50 MA0786.1 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 POU3F1 0.721 0.601 10 12 10 12 0.8333 1.0000 0.8333 D 0
oligos_6nt_mkv3_m50 MA0787.1 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 POU3F2 0.712 0.593 10 12 10 12 0.8333 1.0000 0.8333 D 0
oligos_6nt_mkv3_m50 MA0025.2 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 NFIL3 0.765 0.588 10 13 10 13 0.7692 1.0000 0.7692 D -2
oligos_6nt_mkv3_m50 MA0833.2 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 ATF4 0.804 0.574 10 14 10 14 0.7143 1.0000 0.7143 D -3
oligos_6nt_mkv3_m50 MA0043.3 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 HLF 0.788 0.563 10 14 10 14 0.7143 1.0000 0.7143 D -3
oligos_6nt_mkv3_m50 MA0142.1 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 Pou5f1::Sox2 0.817 0.545 10 15 10 15 0.6667 1.0000 0.6667 D -5
oligos_6nt_mkv3_m50 MA1636.1 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 CEBPG(var.2) 0.797 0.531 10 15 10 15 0.6667 1.0000 0.6667 D -3
oligos_6nt_mkv3_m50 MA0784.1 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 POU1F1 0.722 0.515 10 14 10 14 0.7143 1.0000 0.7143 D -1
oligos_6nt_mkv3_m50 MA0088.2 oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50 ZNF143 0.744 0.465 10 16 10 16 0.6250 1.0000 0.6250 D -6 
 Host name	pedagogix
 Job started	2020-04-13.225217
 Job done	2020-04-13.225234
 Seconds	2.51
	user	2.51
	system	0.27
	cuser	12.81
;	csystem	0.78