One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m6/peak-motifs_oligos_6nt_mkv3_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m6/peak-motifs_oligos_6nt_mkv3_m6_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m6_shift0 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv3_m6_shift0 (oligos_6nt_mkv3_m6oligos_6nt_mkv3_m6)     
; oligos_6nt_mkv3_m6 (oligos_6nt_mkv3_m6oligos_6nt_mkv3_m6); m=0 (reference); ncol1=16; shift=0; ncol=16; csCCGCCCCGCCGCss
; Alignment reference
a	10	10	6	4	3	3	4	1	2	4	2	4	3	3	12	10
c	89	78	136	138	19	142	133	133	144	14	141	143	27	144	74	62
g	39	50	14	16	128	10	23	17	13	142	13	12	124	10	58	68
t	23	23	5	3	11	6	1	10	2	1	5	2	7	4	17	21
MA1513.1_shift4 (KLF15) 
; oligos_6nt_mkv3_m6 versus MA1513.1 (KLF15); m=1/5; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.568134; ----scCCCGCCCcs-
; cor=; Ncor=
a	0	0	0	0	1184.0	937.0	40.0	93.0	0.0	0.0	11.0	55.0	12.0	1566.0	1067.0	0
c	0	0	0	0	2903.0	6506.0	11234.0	10940.0	11368.0	0.0	11345.0	10954.0	11254.0	6267.0	5013.0	0
g	0	0	0	0	5538.0	2117.0	86.0	333.0	1.0	11369.0	2.0	359.0	100.0	1934.0	3124.0	0
t	0	0	0	0	1744.0	1809.0	9.0	3.0	0.0	0.0	11.0	1.0	3.0	1602.0	2165.0	0
MA1564.1_shift4 (SP9) 
; oligos_6nt_mkv3_m6 versus MA1564.1 (SP9); m=2/5; ncol2=12; w=12; offset=4; strand=D; shift=4; score=0.526914; ----rcCmCGCCCmcy
; cor=; Ncor=
a	0	0	0	0	834.0	566.0	321.0	2451.0	2.0	211.0	22.0	0.0	39.0	1192.0	188.0	420.0
c	0	0	0	0	440.0	2451.0	2451.0	1127.0	2451.0	200.0	2451.0	2451.0	2451.0	1259.0	1863.0	1167.0
g	0	0	0	0	952.0	309.0	113.0	56.0	17.0	2451.0	0.0	0.0	24.0	38.0	191.0	204.0
t	0	0	0	0	226.0	518.0	284.0	96.0	9.0	173.0	14.0	30.0	412.0	353.0	588.0	660.0
MA1653.1_shift3 (ZNF148) 
; oligos_6nt_mkv3_m6 versus MA1653.1 (ZNF148); m=3/5; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.525225; ---ysCCCCTCCCcc-
; cor=; Ncor=
a	0	0	0	1399.0	1263.0	82.0	132.0	136.0	89.0	133.0	66.0	352.0	442.0	846.0	841.0	0
c	0	0	0	4593.0	4057.0	10799.0	10396.0	10526.0	10833.0	14.0	10954.0	9922.0	9283.0	7239.0	7114.0	0
g	0	0	0	2241.0	3215.0	205.0	471.0	401.0	211.0	1012.0	112.0	460.0	392.0	1924.0	2064.0	0
t	0	0	0	2966.0	2664.0	113.0	200.0	136.0	66.0	10040.0	67.0	465.0	1082.0	1190.0	1180.0	0
MA0741.1_shift4 (KLF16) 
; oligos_6nt_mkv3_m6 versus MA0741.1 (KLF16); m=4/5; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.493498; ----gmCMCgCCCMC-
; cor=; Ncor=
a	0	0	0	0	666.0	901.0	62.0	1150.0	66.0	497.0	8.0	2.0	16.0	437.0	32.0	0
c	0	0	0	0	535.0	1612.0	1612.0	461.0	1612.0	173.0	1612.0	1612.0	1612.0	1175.0	1612.0	0
g	0	0	0	0	1612.0	77.0	6.0	32.0	17.0	1612.0	0.0	8.0	3.0	19.0	23.0	0
t	0	0	0	0	240.0	116.0	45.0	0.0	19.0	403.0	0.0	0.0	97.0	40.0	370.0	0
MA0599.1_shift4 (KLF5) 
; oligos_6nt_mkv3_m6 versus MA0599.1 (KLF5); m=5/5; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.472836; ----gCCMCrCCCh--
; cor=; Ncor=
a	0	0	0	0	1429.0	0.0	0.0	3477.0	0.0	5051.0	0.0	0.0	0.0	3915.0	0	0
c	0	0	0	0	2023.0	11900.0	12008.0	9569.0	13611.0	0.0	13611.0	13611.0	13135.0	5595.0	0	0
g	0	0	0	0	7572.0	0.0	0.0	0.0	0.0	5182.0	0.0	0.0	0.0	0.0	0	0
t	0	0	0	0	2587.0	1711.0	1603.0	565.0	0.0	3378.0	0.0	0.0	476.0	4101.0	0	0