One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m8/peak-motifs_oligos_6nt_mkv3_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_6nt_mkv3_m8/peak-motifs_oligos_6nt_mkv3_m8_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m8_shift3 ; 18 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv3_m8_shift3 (oligos_6nt_mkv3_m8oligos_6nt_mkv3_m8)     
; oligos_6nt_mkv3_m8 (oligos_6nt_mkv3_m8oligos_6nt_mkv3_m8); m=0 (reference); ncol1=13; shift=3; ncol=17; ---csCCCCTCCCCss-
; Alignment reference
a	0	0	0	94	114	19	7	4	13	30	8	1	4	31	114	91	0
c	0	0	0	274	216	525	598	626	619	46	628	636	625	550	260	241	0
g	0	0	0	146	178	59	17	10	6	78	5	8	13	13	171	179	0
t	0	0	0	135	141	46	27	9	11	495	8	4	7	55	104	138	0
MA1653.1_shift3 (ZNF148) 
; oligos_6nt_mkv3_m8 versus MA1653.1 (ZNF148); m=1/17; ncol2=12; w=12; offset=0; strand=D; shift=3; score= 0.9017; ---ysCCCCTCCCcc--
; cor=; Ncor=
a	0	0	0	1399.0	1263.0	82.0	132.0	136.0	89.0	133.0	66.0	352.0	442.0	846.0	841.0	0	0
c	0	0	0	4593.0	4057.0	10799.0	10396.0	10526.0	10833.0	14.0	10954.0	9922.0	9283.0	7239.0	7114.0	0	0
g	0	0	0	2241.0	3215.0	205.0	471.0	401.0	211.0	1012.0	112.0	460.0	392.0	1924.0	2064.0	0	0
t	0	0	0	2966.0	2664.0	113.0	200.0	136.0	66.0	10040.0	67.0	465.0	1082.0	1190.0	1180.0	0	0
MA1522.1_shift3 (MAZ) 
; oligos_6nt_mkv3_m8 versus MA1522.1 (MAZ); m=2/17; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.805041; ---ssCCCCTCCcc---
; cor=; Ncor=
a	0	0	0	2480.0	1819.0	17.0	49.0	36.0	39.0	6.0	90.0	23.0	1109.0	2016.0	0	0	0
c	0	0	0	5198.0	5068.0	14945.0	14630.0	14731.0	14676.0	0.0	14961.0	14944.0	9372.0	6775.0	0	0	0
g	0	0	0	4277.0	5163.0	75.0	384.0	290.0	347.0	130.0	8.0	96.0	1768.0	2539.0	0	0	0
t	0	0	0	3108.0	3013.0	26.0	0.0	6.0	1.0	14927.0	4.0	0.0	2814.0	3733.0	0	0	0
MA0039.4_shift3 (KLF4) 
; oligos_6nt_mkv3_m8 versus MA0039.4 (KLF4); m=3/17; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.779013; ---ssCCCCACCChs--
; cor=; Ncor=
a	0	0	0	12570.0	11487.0	2465.0	2105.0	7021.0	1173.0	45602.0	852.0	1617.0	1202.0	16264.0	9959.0	0	0
c	0	0	0	17520.0	14038.0	49209.0	47865.0	45405.0	52875.0	161.0	52366.0	51112.0	51045.0	18249.0	19217.0	0	0
g	0	0	0	14243.0	18473.0	1583.0	1214.0	1422.0	793.0	6598.0	1470.0	1870.0	1005.0	6292.0	14422.0	0	0
t	0	0	0	11484.0	11819.0	2560.0	4633.0	1969.0	976.0	3456.0	1129.0	1218.0	2565.0	15012.0	12219.0	0	0
MA0753.2_shift3 (ZNF740) 
; oligos_6nt_mkv3_m8 versus MA0753.2 (ZNF740); m=4/17; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.763959; ---cyrCCCCCCCCAc-
; cor=; Ncor=
a	0	0	0	186.0	162.0	727.0	60.0	110.0	18.0	22.0	23.0	10.0	2.0	115.0	1055.0	207.0	0
c	0	0	0	502.0	677.0	343.0	1055.0	1055.0	1055.0	1055.0	1055.0	1055.0	1055.0	1055.0	239.0	1055.0	0
g	0	0	0	182.0	72.0	1055.0	37.0	14.0	4.0	7.0	3.0	7.0	3.0	6.0	68.0	54.0	0
t	0	0	0	185.0	378.0	312.0	49.0	1.0	16.0	15.0	11.0	6.0	3.0	4.0	134.0	246.0	0
MA0528.2_rc_shift4 (ZNF263_rc) 
; oligos_6nt_mkv3_m8 versus MA0528.2_rc (ZNF263_rc); m=5/17; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.737896; ----csTCCTCCCcsc-
; cor=; Ncor=
a	0	0	0	0	11103.0	6566.0	638.0	717.0	1672.0	620.0	986.0	1192.0	1270.0	8247.0	12535.0	9733.0	0
c	0	0	0	0	25115.0	24825.0	1448.0	52741.0	52875.0	163.0	53435.0	52818.0	51804.0	28912.0	17883.0	20283.0	0
g	0	0	0	0	11689.0	15413.0	1758.0	2190.0	966.0	1660.0	972.0	1544.0	1659.0	6183.0	14909.0	13040.0	0
t	0	0	0	0	8436.0	9539.0	52499.0	695.0	830.0	53900.0	950.0	789.0	1610.0	13001.0	11016.0	13287.0	0
MA0746.2_shift3 (SP3) 
; oligos_6nt_mkv3_m8 versus MA0746.2 (SP3); m=6/17; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.720002; ---srCCACGCCCmCy-
; cor=; Ncor=
a	0	0	0	1267.0	2146.0	664.0	160.0	5253.0	6.0	465.0	0.0	0.0	2.0	3430.0	556.0	1516.0	0
c	0	0	0	1884.0	531.0	6591.0	6591.0	1338.0	6591.0	0.0	6591.0	6591.0	6591.0	3160.0	5116.0	2608.0	0
g	0	0	0	1895.0	4445.0	226.0	54.0	2.0	0.0	6591.0	0.0	0.0	2.0	39.0	297.0	524.0	0
t	0	0	0	1545.0	421.0	345.0	202.0	11.0	12.0	504.0	0.0	9.0	718.0	552.0	1475.0	1943.0	0
MA1513.1_shift4 (KLF15) 
; oligos_6nt_mkv3_m8 versus MA1513.1 (KLF15); m=7/17; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.717458; ----scCCCGCCCcs--
; cor=; Ncor=
a	0	0	0	0	1184.0	937.0	40.0	93.0	0.0	0.0	11.0	55.0	12.0	1566.0	1067.0	0	0
c	0	0	0	0	2903.0	6506.0	11234.0	10940.0	11368.0	0.0	11345.0	10954.0	11254.0	6267.0	5013.0	0	0
g	0	0	0	0	5538.0	2117.0	86.0	333.0	1.0	11369.0	2.0	359.0	100.0	1934.0	3124.0	0	0
t	0	0	0	0	1744.0	1809.0	9.0	3.0	0.0	0.0	11.0	1.0	3.0	1602.0	2165.0	0	0
MA0599.1_shift4 (KLF5) 
; oligos_6nt_mkv3_m8 versus MA0599.1 (KLF5); m=8/17; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.691599; ----gCCMCrCCCh---
; cor=; Ncor=
a	0	0	0	0	1429.0	0.0	0.0	3477.0	0.0	5051.0	0.0	0.0	0.0	3915.0	0	0	0
c	0	0	0	0	2023.0	11900.0	12008.0	9569.0	13611.0	0.0	13611.0	13611.0	13135.0	5595.0	0	0	0
g	0	0	0	0	7572.0	0.0	0.0	0.0	0.0	5182.0	0.0	0.0	0.0	0.0	0	0	0
t	0	0	0	0	2587.0	1711.0	1603.0	565.0	0.0	3378.0	0.0	0.0	476.0	4101.0	0	0	0
MA1564.1_shift4 (SP9) 
; oligos_6nt_mkv3_m8 versus MA1564.1 (SP9); m=9/17; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.689695; ----rcCmCGCCCmcy-
; cor=; Ncor=
a	0	0	0	0	834.0	566.0	321.0	2451.0	2.0	211.0	22.0	0.0	39.0	1192.0	188.0	420.0	0
c	0	0	0	0	440.0	2451.0	2451.0	1127.0	2451.0	200.0	2451.0	2451.0	2451.0	1259.0	1863.0	1167.0	0
g	0	0	0	0	952.0	309.0	113.0	56.0	17.0	2451.0	0.0	0.0	24.0	38.0	191.0	204.0	0
t	0	0	0	0	226.0	518.0	284.0	96.0	9.0	173.0	14.0	30.0	412.0	353.0	588.0	660.0	0
MA0741.1_shift4 (KLF16) 
; oligos_6nt_mkv3_m8 versus MA0741.1 (KLF16); m=10/17; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.669088; ----gmCMCgCCCMC--
; cor=; Ncor=
a	0	0	0	0	666.0	901.0	62.0	1150.0	66.0	497.0	8.0	2.0	16.0	437.0	32.0	0	0
c	0	0	0	0	535.0	1612.0	1612.0	461.0	1612.0	173.0	1612.0	1612.0	1612.0	1175.0	1612.0	0	0
g	0	0	0	0	1612.0	77.0	6.0	32.0	17.0	1612.0	0.0	8.0	3.0	19.0	23.0	0	0
t	0	0	0	0	240.0	116.0	45.0	0.0	19.0	403.0	0.0	0.0	97.0	40.0	370.0	0	0
MA0747.1_shift4 (SP8) 
; oligos_6nt_mkv3_m8 versus MA0747.1 (SP8); m=11/17; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.664588; ----rmCACgCCCmCy-
; cor=; Ncor=
a	0	0	0	0	52.0	54.0	25.0	133.0	7.0	25.0	5.0	2.0	0.0	90.0	13.0	31.0	0
c	0	0	0	0	27.0	113.0	167.0	33.0	167.0	37.0	167.0	167.0	167.0	77.0	167.0	52.0	0
g	0	0	0	0	78.0	0.0	0.0	1.0	1.0	167.0	6.0	3.0	4.0	6.0	21.0	1.0	0
t	0	0	0	0	10.0	4.0	13.0	2.0	5.0	39.0	2.0	0.0	15.0	3.0	39.0	82.0	0
MA1515.1_shift3 (KLF2) 
; oligos_6nt_mkv3_m8 versus MA1515.1 (KLF2); m=12/17; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.641045; ---srCCmCrCCCw---
; cor=; Ncor=
a	0	0	0	1054.0	2510.0	741.0	403.0	4622.0	0.0	1702.0	0.0	128.0	68.0	1838.0	0	0	0
c	0	0	0	1376.0	1103.0	4622.0	4622.0	2265.0	4622.0	274.0	4622.0	4622.0	4622.0	1142.0	0	0	0
g	0	0	0	1320.0	2112.0	495.0	186.0	1060.0	0.0	2920.0	49.0	195.0	105.0	389.0	0	0	0
t	0	0	0	872.0	433.0	346.0	312.0	214.0	78.0	167.0	22.0	9.0	444.0	1253.0	0	0	0
MA0516.2_shift0 (SP2) 
; oligos_6nt_mkv3_m8 versus MA0516.2 (SP2); m=13/17; ncol2=17; w=13; offset=-3; strand=D; shift=0; score=0.571712; mTAAGyCCCGCCCmCyy
; cor=; Ncor=
a	256.0	53.0	613.0	753.0	54.0	34.0	14.0	16.0	4.0	82.0	0.0	5.0	23.0	402.0	22.0	109.0	150.0
c	308.0	171.0	76.0	84.0	127.0	456.0	774.0	786.0	788.0	52.0	795.0	793.0	774.0	390.0	679.0	221.0	203.0
g	123.0	57.0	0.0	33.0	791.0	8.0	1.0	13.0	22.0	780.0	0.0	26.0	0.0	22.0	1.0	0.0	88.0
t	106.0	608.0	180.0	67.0	43.0	327.0	0.0	8.0	12.0	45.0	18.0	7.0	27.0	17.0	101.0	503.0	352.0
MA1578.1_shift6 (VEZF1) 
; oligos_6nt_mkv3_m8 versus MA1578.1 (VEZF1); m=14/17; ncol2=10; w=10; offset=3; strand=D; shift=6; score=0.570369; ------CCCCCCmytw-
; cor=; Ncor=
a	0	0	0	0	0	0	71.0	1.0	4.0	2.0	6.0	10.0	406.0	44.0	240.0	333.0	0
c	0	0	0	0	0	0	790.0	997.0	995.0	997.0	989.0	977.0	357.0	550.0	171.0	173.0	0
g	0	0	0	0	0	0	137.0	0.0	0.0	0.0	0.0	3.0	110.0	70.0	211.0	152.0	0
t	0	0	0	0	0	0	0.0	0.0	0.0	0.0	4.0	8.0	125.0	334.0	377.0	339.0	0
MA1627.1_shift5 (Wt1) 
; oligos_6nt_mkv3_m8 versus MA1627.1 (Wt1); m=15/17; ncol2=14; w=11; offset=2; strand=D; shift=5; score=0.565725; -----cycCTCCCCCAC
; cor=; Ncor=
a	0	0	0	0	0	876.0	667.0	839.0	48.0	120.0	21.0	40.0	43.0	850.0	31.0	3294.0	158.0
c	0	0	0	0	0	1881.0	1630.0	2948.0	4546.0	69.0	4602.0	4354.0	4252.0	3636.0	4573.0	53.0	3749.0
g	0	0	0	0	0	794.0	1161.0	404.0	58.0	319.0	42.0	75.0	120.0	101.0	46.0	990.0	436.0
t	0	0	0	0	0	1140.0	1233.0	500.0	39.0	4183.0	26.0	222.0	276.0	104.0	41.0	354.0	348.0
MA0057.1_rc_shift2 (MZF1(var.2)_rc) 
; oligos_6nt_mkv3_m8 versus MA0057.1_rc (MZF1(var.2)_rc); m=16/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.519328; --yymCCCMTmv-----
; cor=; Ncor=
a	0	0	2.0	2.0	4.0	2.0	0.0	1.0	5.0	0.0	7.0	4.0	0	0	0	0	0
c	0	0	4.0	4.0	8.0	14.0	14.0	15.0	11.0	0.0	7.0	7.0	0	0	0	0	0
g	0	0	2.0	0.0	1.0	0.0	2.0	0.0	0.0	1.0	0.0	4.0	0	0	0	0	0
t	0	0	8.0	10.0	3.0	0.0	0.0	0.0	0.0	15.0	2.0	1.0	0	0	0	0	0
MA1630.1_rc_shift7 (Znf281_rc) 
; oligos_6nt_mkv3_m8 versus MA1630.1_rc (Znf281_rc); m=17/17; ncol2=11; w=9; offset=4; strand=R; shift=7; score=0.507508; -------CcTCCCCCAc
; cor=; Ncor=
a	0	0	0	0	0	0	0	315.0	1103.0	11.0	52.0	29.0	23.0	24.0	12.0	6298.0	745.0
c	0	0	0	0	0	0	0	5523.0	4312.0	8.0	6457.0	6402.0	6378.0	6356.0	6449.0	29.0	3751.0
g	0	0	0	0	0	0	0	356.0	418.0	45.0	41.0	115.0	131.0	163.0	88.0	233.0	1076.0
t	0	0	0	0	0	0	0	374.0	735.0	6504.0	18.0	22.0	36.0	25.0	19.0	8.0	996.0