Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m13/peak-motifs_oligos_7nt_mkv4_m13_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m13/peak-motifs_oligos_7nt_mkv4_m13.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m13/peak-motifs_oligos_7nt_mkv4_m13_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m13/peak-motifs_oligos_7nt_mkv4_m13.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m13/peak-motifs_oligos_7nt_mkv4_m13_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m13/peak-motifs_oligos_7nt_mkv4_m13_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m13/peak-motifs_oligos_7nt_mkv4_m13_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m13/peak-motifs_oligos_7nt_mkv4_m13_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m13/peak-motifs_oligos_7nt_mkv4_m13_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m13/peak-motifs_oligos_7nt_mkv4_m13_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m13/peak-motifs_oligos_7nt_mkv4_m13.tf
		file1	1	11	283
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m13 MA1638.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 HAND2 0.919 0.835 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv4_m13 MA1642.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 NEUROG2(var.2) 0.939 0.794 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_7nt_mkv4_m13 MA1109.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 NEUROD1 0.934 0.791 11 13 11 13 0.8462 1.0000 0.8462 D 0
oligos_7nt_mkv4_m13 MA1618.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 Ptf1a 0.923 0.781 11 13 11 13 0.8462 1.0000 0.8462 D 0
oligos_7nt_mkv4_m13 MA0633.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 Twist2 0.798 0.725 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m13 MA1472.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 BHLHA15(var.2) 0.793 0.721 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m13 MA0461.2 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 Atoh1 0.780 0.709 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv4_m13 MA1620.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 Ptf1a(var.3) 0.763 0.699 11 12 11 12 0.9167 1.0000 0.9167 R 0
oligos_7nt_mkv4_m13 MA1619.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 Ptf1a(var.2) 0.752 0.689 11 12 11 12 0.9167 1.0000 0.9167 R 0
oligos_7nt_mkv4_m13 MA1570.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 TFAP4(var.2) 0.756 0.687 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv4_m13 MA1641.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 MYF5 0.749 0.687 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_7nt_mkv4_m13 MA0499.2 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 MYOD1 0.810 0.685 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_7nt_mkv4_m13 MA0669.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 NEUROG2 0.753 0.684 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv4_m13 MA1467.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 ATOH1(var.2) 0.753 0.684 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv4_m13 MA1123.2 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 TWIST1 0.806 0.682 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_7nt_mkv4_m13 MA1524.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 MSGN1 0.741 0.679 11 12 11 12 0.9167 1.0000 0.9167 R 0
oligos_7nt_mkv4_m13 MA1468.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 ATOH7 0.744 0.677 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m13 MA0623.2 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 NEUROG1 0.736 0.669 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m13 MA0820.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 FIGLA 0.735 0.668 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m13 MA1646.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 OSR2 0.726 0.665 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_7nt_mkv4_m13 MA1559.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 SNAI3 0.725 0.659 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv4_m13 MA0521.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 Tcf12 0.791 0.659 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_7nt_mkv4_m13 MA1100.2 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 ASCL1 0.718 0.653 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv4_m13 MA0745.2 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 SNAI2 0.768 0.650 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_7nt_mkv4_m13 MA1108.2 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 MXI1 0.714 0.649 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv4_m13 MA0667.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 MYF6 0.712 0.647 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m13 MA0100.3 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 MYB 0.709 0.645 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m13 MA0817.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 BHLHE23 0.702 0.644 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_7nt_mkv4_m13 MA0668.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 NEUROD2 0.707 0.643 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m13 MA0665.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 MSC 0.700 0.637 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m13 MA0091.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 TAL1::TCF3 0.807 0.621 11 12 10 13 0.7692 0.9091 0.8333 R 1
oligos_7nt_mkv4_m13 MA0698.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 ZBTB18 0.731 0.619 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_7nt_mkv4_m13 MA0607.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 Bhlha15 0.833 0.606 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv4_m13 MA1485.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 FERD3L 0.762 0.599 11 14 11 14 0.7857 1.0000 0.7857 R -1
oligos_7nt_mkv4_m13 MA1621.1 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 Rbpjl 0.753 0.592 11 14 11 14 0.7857 1.0000 0.7857 R -1
oligos_7nt_mkv4_m13 MA0743.2 oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13 SCRT1 0.702 0.483 11 16 11 16 0.6875 1.0000 0.6875 D -4 
 Host name	pedagogix
 Job started	2020-04-13.230625
 Job done	2020-04-13.230656
 Seconds	4.04
	user	4.04
	system	0.47
	cuser	24.56
;	csystem	1.75