One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m16/peak-motifs_oligos_7nt_mkv4_m16.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m16/peak-motifs_oligos_7nt_mkv4_m16_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m16_shift3 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv4_m16_shift3 (oligos_7nt_mkv4_m16oligos_7nt_mkv4_m16)     
; oligos_7nt_mkv4_m16 (oligos_7nt_mkv4_m16oligos_7nt_mkv4_m16); m=0 (reference); ncol1=12; shift=3; ncol=15; ---smTGAGCTCAks
; Alignment reference
a	0	0	0	27	38	0	3	127	2	5	0	6	124	16	24
c	0	0	0	36	44	4	0	3	11	112	0	121	2	32	43
g	0	0	0	43	32	2	121	0	112	11	3	0	4	44	36
t	0	0	0	24	16	124	6	0	5	2	127	3	0	38	27
MA1632.1_rc_shift3 (ATF2_rc) 
; oligos_7nt_mkv4_m16 versus MA1632.1_rc (ATF2_rc); m=1/5; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.70939; ---raTGACvTCATy
; cor=; Ncor=
a	0	0	0	18336.0	36321.0	509.0	909.0	57832.0	261.0	18166.0	975.0	2498.0	57651.0	1438.0	11021.0
c	0	0	0	11553.0	5971.0	768.0	649.0	283.0	56882.0	23207.0	262.0	55318.0	328.0	6229.0	18924.0
g	0	0	0	15785.0	14153.0	218.0	53464.0	316.0	886.0	16970.0	396.0	408.0	899.0	3145.0	10292.0
t	0	0	0	13720.0	2949.0	57899.0	4372.0	963.0	1365.0	1051.0	57761.0	1170.0	516.0	48582.0	19157.0
MA0018.4_rc_shift3 (CREB1_rc) 
; oligos_7nt_mkv4_m16 versus MA0018.4_rc (CREB1_rc); m=2/5; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.667896; ---drTGACATCAyh
; cor=; Ncor=
a	0	0	0	21630.0	32873.0	1485.0	1852.0	68217.0	1831.0	56875.0	2279.0	2963.0	75554.0	10149.0	22306.0
c	0	0	0	13550.0	14802.0	1222.0	2177.0	1207.0	74401.0	6339.0	2012.0	72555.0	1109.0	27796.0	21104.0
g	0	0	0	21876.0	21582.0	1018.0	71982.0	1231.0	1895.0	14144.0	1748.0	2298.0	970.0	13032.0	15046.0
t	0	0	0	22488.0	10287.0	75819.0	3533.0	8889.0	1417.0	2186.0	73505.0	1728.0	1911.0	28567.0	21088.0
MA0492.1_shift0 (JUND(var.2)) 
; oligos_7nt_mkv4_m16 versus MA0492.1 (JUND(var.2)); m=3/5; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.593594; wrwrATGAyGTMATm
; cor=; Ncor=
a	11448.0	13436.0	11261.0	13616.0	25347.0	0.0	0.0	33631.0	0.0	5124.0	0.0	8793.0	33631.0	267.0	10255.0
c	4326.0	3228.0	4836.0	2452.0	169.0	0.0	0.0	0.0	10406.0	1824.0	3935.0	24697.0	0.0	5470.0	10841.0
g	7996.0	8721.0	8110.0	15761.0	8115.0	0.0	33511.0	0.0	8287.0	26683.0	0.0	141.0	0.0	2407.0	6351.0
t	9861.0	8246.0	9424.0	1802.0	0.0	33631.0	120.0	0.0	14938.0	0.0	29696.0	0.0	0.0	25487.0	6184.0
MA0693.2_rc_shift5 (VDR_rc) 
; oligos_7nt_mkv4_m16 versus MA0693.2_rc (VDR_rc); m=4/5; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.471411; -----TGAACyyr--
; cor=; Ncor=
a	0	0	0	0	0	19.0	174.0	827.0	890.0	32.0	34.0	32.0	455.0	0	0
c	0	0	0	0	0	76.0	28.0	82.0	70.0	919.0	386.0	567.0	43.0	0	0
g	0	0	0	0	0	19.0	743.0	31.0	23.0	25.0	24.0	45.0	280.0	0	0
t	0	0	0	0	0	886.0	55.0	61.0	17.0	24.0	555.0	356.0	222.0	0	0
MA0793.1_rc_shift1 (POU6F2_rc) 
; oligos_7nt_mkv4_m16 versus MA0793.1_rc (POU6F2_rc); m=5/5; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.407038; -wTAATkAGst----
; cor=; Ncor=
a	0	1278.0	53.0	3297.0	3297.0	21.0	81.0	3297.0	257.0	266.0	546.0	0	0	0	0
c	0	205.0	22.0	41.0	0.0	0.0	50.0	114.0	219.0	2116.0	582.0	0	0	0	0
g	0	546.0	27.0	12.0	4.0	75.0	2105.0	64.0	3297.0	1181.0	321.0	0	0	0	0
t	0	1268.0	3297.0	0.0	0.0	3297.0	1192.0	75.0	239.0	714.0	1848.0	0	0	0	0