Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m18/peak-motifs_oligos_7nt_mkv4_m18_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m18/peak-motifs_oligos_7nt_mkv4_m18.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m18/peak-motifs_oligos_7nt_mkv4_m18_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m18/peak-motifs_oligos_7nt_mkv4_m18.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m18/peak-motifs_oligos_7nt_mkv4_m18_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m18/peak-motifs_oligos_7nt_mkv4_m18_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m18/peak-motifs_oligos_7nt_mkv4_m18_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m18/peak-motifs_oligos_7nt_mkv4_m18_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m18/peak-motifs_oligos_7nt_mkv4_m18_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m18/peak-motifs_oligos_7nt_mkv4_m18_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m18/peak-motifs_oligos_7nt_mkv4_m18.tf
		file1	1	12	220
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m18 MA0605.2 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 ATF3 0.840 0.840 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m18 MA1632.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 ATF2 0.903 0.833 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_7nt_mkv4_m18 MA1475.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 CREB3L4(var.2) 0.827 0.827 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m18 MA1139.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 FOSL2::JUNB(var.2) 0.818 0.818 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m18 MA0656.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 JDP2(var.2) 0.818 0.818 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m18 MA1140.2 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 JUNB(var.2) 0.808 0.808 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m18 MA1133.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 JUN::JUNB(var.2) 0.807 0.807 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m18 MA0018.4 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 CREB1 0.874 0.806 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_7nt_mkv4_m18 MA0840.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 Creb5 0.796 0.796 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m18 MA1131.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 FOSL2::JUN(var.2) 0.824 0.755 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv4_m18 MA1127.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 FOSB::JUN 0.816 0.748 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_7nt_mkv4_m18 MA0834.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 ATF7 0.806 0.691 12 14 12 14 0.8571 1.0000 0.8571 R -1
oligos_7nt_mkv4_m18 MA1111.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 NR2F2 0.739 0.677 12 11 11 12 0.9167 0.9167 1.0000 R 0
oligos_7nt_mkv4_m18 MA0492.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 JUND(var.2) 0.842 0.674 12 15 12 15 0.8000 1.0000 0.8000 R 0
oligos_7nt_mkv4_m18 MA1136.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 FOSB::JUNB(var.2) 0.807 0.673 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m18 MA0684.2 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 RUNX3 0.788 0.667 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_7nt_mkv4_m18 MA1145.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 FOSL2::JUND(var.2) 0.833 0.666 12 15 12 15 0.8000 1.0000 0.8000 D -1
oligos_7nt_mkv4_m18 MA1129.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 FOSL1::JUN(var.2) 0.790 0.658 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m18 MA1150.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 RORB 0.713 0.653 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_7nt_mkv4_m18 MA0488.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 JUN 0.825 0.648 12 13 11 14 0.7857 0.9167 0.8462 R 1
oligos_7nt_mkv4_m18 MA0609.2 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 CREM 0.844 0.633 12 16 12 16 0.7500 1.0000 0.7500 D -2
oligos_7nt_mkv4_m18 MA1126.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 FOS::JUN(var.2) 0.828 0.621 12 16 12 16 0.7500 1.0000 0.7500 D 0
oligos_7nt_mkv4_m18 MA1143.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 FOSL1::JUND(var.2) 0.743 0.619 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m18 MA0017.2 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 NR2F1 0.784 0.616 12 13 11 14 0.7857 0.9167 0.8462 R -2
oligos_7nt_mkv4_m18 MA1535.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 NR2C1 0.820 0.615 12 9 9 12 0.7500 0.7500 1.0000 R 1
oligos_7nt_mkv4_m18 MA0071.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 RORA 0.731 0.609 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_7nt_mkv4_m18 MA1536.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 NR2C2(var.2) 0.853 0.569 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_7nt_mkv4_m18 MA0160.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 NR4A2 0.837 0.558 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_7nt_mkv4_m18 MA1576.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 THRB(var.3) 0.863 0.475 12 19 11 20 0.5500 0.9167 0.5789 D 1
oligos_7nt_mkv4_m18 MA1110.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 NR1H4 0.731 0.470 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_7nt_mkv4_m18 MA1575.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 THRB(var.2) 0.845 0.465 12 19 11 20 0.5500 0.9167 0.5789 D 1
oligos_7nt_mkv4_m18 MA1470.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 BACH2(var.2) 0.736 0.442 12 20 12 20 0.6000 1.0000 0.6000 R -4
oligos_7nt_mkv4_m18 MA1556.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 RXRG(var.2) 0.824 0.436 12 14 9 17 0.5294 0.7500 0.6429 R -5
oligos_7nt_mkv4_m18 MA1538.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 NR2F1(var.3) 0.857 0.428 12 15 9 18 0.5000 0.7500 0.6000 D -6
oligos_7nt_mkv4_m18 MA0014.3 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 PAX5 0.709 0.425 12 12 9 15 0.6000 0.7500 0.7500 D -3
oligos_7nt_mkv4_m18 MA1539.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 NR2F6(var.3) 0.846 0.423 12 15 9 18 0.5000 0.7500 0.6000 D -6
oligos_7nt_mkv4_m18 MA1555.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 RXRB(var.2) 0.794 0.421 12 14 9 17 0.5294 0.7500 0.6429 D -5
oligos_7nt_mkv4_m18 MA0067.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 Pax2 0.780 0.420 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_7nt_mkv4_m18 MA0858.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 Rarb(var.2) 0.796 0.419 12 17 10 19 0.5263 0.8333 0.5882 R 2
oligos_7nt_mkv4_m18 MA0728.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 Nr2f6(var.2) 0.829 0.414 12 15 9 18 0.5000 0.7500 0.6000 R -6
oligos_7nt_mkv4_m18 MA1552.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 RARB(var.3) 0.781 0.414 12 14 9 17 0.5294 0.7500 0.6429 D -5
oligos_7nt_mkv4_m18 MA1553.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 RARG(var.3) 0.769 0.407 12 14 9 17 0.5294 0.7500 0.6429 D -5
oligos_7nt_mkv4_m18 MA0159.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 RARA::RXRA 0.774 0.407 12 17 10 19 0.5263 0.8333 0.5882 R 2
oligos_7nt_mkv4_m18 MA0860.1 oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18 Rarg(var.2) 0.773 0.407 12 17 10 19 0.5263 0.8333 0.5882 R 2 
 Host name	pedagogix
 Job started	2020-04-13.230718
 Job done	2020-04-13.230757
 Seconds	5.35
	user	5.35
	system	0.87
	cuser	29.91
;	csystem	2.37