Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m19/peak-motifs_oligos_7nt_mkv4_m19_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m19/peak-motifs_oligos_7nt_mkv4_m19.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m19/peak-motifs_oligos_7nt_mkv4_m19_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m19/peak-motifs_oligos_7nt_mkv4_m19.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m19/peak-motifs_oligos_7nt_mkv4_m19_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m19/peak-motifs_oligos_7nt_mkv4_m19_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m19/peak-motifs_oligos_7nt_mkv4_m19_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m19/peak-motifs_oligos_7nt_mkv4_m19_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m19/peak-motifs_oligos_7nt_mkv4_m19_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m19/peak-motifs_oligos_7nt_mkv4_m19_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m19/peak-motifs_oligos_7nt_mkv4_m19.tf
		file1	1	12	233
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m19 MA1620.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 Ptf1a(var.3) 0.856 0.856 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m19 MA1641.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 MYF5 0.827 0.827 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m19 MA1619.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 Ptf1a(var.2) 0.811 0.811 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m19 MA0667.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 MYF6 0.907 0.756 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m19 MA1618.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 Ptf1a 0.817 0.754 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_7nt_mkv4_m19 MA0783.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 PKNOX2 0.746 0.746 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m19 MA0797.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 TGIF2 0.736 0.736 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m19 MA0796.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 TGIF1 0.731 0.731 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m19 MA1571.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 TGIF2LX 0.725 0.725 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m19 MA1621.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 Rbpjl 0.841 0.721 12 14 12 14 0.8571 1.0000 0.8571 R -1
oligos_7nt_mkv4_m19 MA0499.2 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 MYOD1 0.779 0.719 12 13 12 13 0.9231 1.0000 0.9231 R -1
oligos_7nt_mkv4_m19 MA1572.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 TGIF2LY 0.715 0.715 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m19 MA0745.2 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 SNAI2 0.769 0.710 12 13 12 13 0.9231 1.0000 0.9231 R -1
oligos_7nt_mkv4_m19 MA0500.2 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 MYOG 0.709 0.709 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m19 MA0100.3 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 MYB 0.843 0.702 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m19 MA0665.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 MSC 0.830 0.692 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m19 MA0832.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 Tcf21 0.803 0.689 12 14 12 14 0.8571 1.0000 0.8571 D -1
oligos_7nt_mkv4_m19 MA0521.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 Tcf12 0.750 0.688 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv4_m19 MA1467.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 ATOH1(var.2) 0.820 0.683 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m19 MA0820.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 FIGLA 0.792 0.660 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m19 MA1485.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 FERD3L 0.765 0.656 12 14 12 14 0.8571 1.0000 0.8571 R -1
oligos_7nt_mkv4_m19 MA1123.2 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 TWIST1 0.708 0.654 12 13 12 13 0.9231 1.0000 0.9231 D -1
oligos_7nt_mkv4_m19 MA1472.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 BHLHA15(var.2) 0.783 0.653 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m19 MA0698.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 ZBTB18 0.704 0.649 12 13 12 13 0.9231 1.0000 0.9231 D -1
oligos_7nt_mkv4_m19 MA0691.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 TFAP4 0.744 0.620 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m19 MA1559.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 SNAI3 0.739 0.616 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m19 MA0091.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 TAL1::TCF3 0.722 0.611 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_7nt_mkv4_m19 MA1570.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 TFAP4(var.2) 0.718 0.598 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m19 MA0816.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 Ascl2 0.712 0.593 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m19 MA1558.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 SNAI1 0.711 0.592 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m19 MA0743.2 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 SCRT1 0.725 0.544 12 16 12 16 0.7500 1.0000 0.7500 D -4
oligos_7nt_mkv4_m19 MA0744.2 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 SCRT2 0.713 0.535 12 16 12 16 0.7500 1.0000 0.7500 D -4
oligos_7nt_mkv4_m19 MA0807.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 TBX5 0.724 0.483 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_7nt_mkv4_m19 MA0806.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 TBX4 0.723 0.482 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_7nt_mkv4_m19 MA0803.1 oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19 TBX15 0.710 0.473 12 8 8 12 0.6667 0.6667 1.0000 D 4 
 Host name	pedagogix
 Job started	2020-04-13.230757
 Job done	2020-04-13.230832
 Seconds	4.78
	user	4.78
	system	0.48
	cuser	27.09
;	csystem	1.71