Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20.tf
		file1	1	16	195
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m20 MA0685.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 SP4 0.758 0.713 16 17 16 17 0.9412 1.0000 0.9412 D 0
oligos_7nt_mkv4_m20 MA0516.2 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 SP2 0.754 0.710 16 17 16 17 0.9412 1.0000 0.9412 D -1
oligos_7nt_mkv4_m20 MA0079.4 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 SP1 0.756 0.709 16 15 15 16 0.9375 0.9375 1.0000 D 0
oligos_7nt_mkv4_m20 MA0746.2 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 SP3 0.824 0.670 16 13 13 16 0.8125 0.8125 1.0000 D 2
oligos_7nt_mkv4_m20 MA1513.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 KLF15 0.938 0.645 16 11 11 16 0.6875 0.6875 1.0000 D 3
oligos_7nt_mkv4_m20 MA0740.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 KLF14 0.736 0.644 16 14 14 16 0.8750 0.8750 1.0000 D 2
oligos_7nt_mkv4_m20 MA1564.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 SP9 0.847 0.635 16 12 12 16 0.7500 0.7500 1.0000 D 3
oligos_7nt_mkv4_m20 MA1653.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 ZNF148 0.817 0.612 16 12 12 16 0.7500 0.7500 1.0000 D 2
oligos_7nt_mkv4_m20 MA0753.2 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 ZNF740 0.752 0.611 16 13 13 16 0.8125 0.8125 1.0000 D 1
oligos_7nt_mkv4_m20 MA0741.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 KLF16 0.871 0.599 16 11 11 16 0.6875 0.6875 1.0000 D 3
oligos_7nt_mkv4_m20 MA0747.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 SP8 0.796 0.597 16 12 12 16 0.7500 0.7500 1.0000 D 3
oligos_7nt_mkv4_m20 MA0039.4 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 KLF4 0.766 0.575 16 12 12 16 0.7500 0.7500 1.0000 D 2
oligos_7nt_mkv4_m20 MA0599.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 KLF5 0.904 0.565 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_7nt_mkv4_m20 MA1512.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 KLF11 0.810 0.557 16 11 11 16 0.6875 0.6875 1.0000 D 3
oligos_7nt_mkv4_m20 MA1515.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 KLF2 0.793 0.545 16 11 11 16 0.6875 0.6875 1.0000 D 2
oligos_7nt_mkv4_m20 MA1522.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 MAZ 0.761 0.523 16 11 11 16 0.6875 0.6875 1.0000 D 2
oligos_7nt_mkv4_m20 MA1511.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 KLF10 0.754 0.518 16 11 11 16 0.6875 0.6875 1.0000 D 3
oligos_7nt_mkv4_m20 MA0162.4 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 EGR1 0.774 0.516 16 14 12 18 0.6667 0.7500 0.8571 D 4
oligos_7nt_mkv4_m20 MA1517.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 KLF6 0.744 0.511 16 11 11 16 0.6875 0.6875 1.0000 D 2
oligos_7nt_mkv4_m20 MA1516.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 KLF3 0.726 0.499 16 11 11 16 0.6875 0.6875 1.0000 D 2
oligos_7nt_mkv4_m20 MA1627.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 Wt1 0.727 0.484 16 14 12 18 0.6667 0.7500 0.8571 D 4
oligos_7nt_mkv4_m20 MA0732.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 EGR3 0.744 0.470 16 15 12 19 0.6316 0.7500 0.8000 D 4
oligos_7nt_mkv4_m20 MA1578.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 VEZF1 0.706 0.441 16 10 10 16 0.6250 0.6250 1.0000 D 6
oligos_7nt_mkv4_m20 MA1102.2 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 CTCFL 0.787 0.437 16 12 10 18 0.5556 0.6250 0.8333 R 6
oligos_7nt_mkv4_m20 MA0733.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 EGR4 0.725 0.435 16 16 12 20 0.6000 0.7500 0.7500 D 4
oligos_7nt_mkv4_m20 MA0472.2 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 EGR2 0.737 0.433 16 11 10 17 0.5882 0.6250 0.9091 D 6
oligos_7nt_mkv4_m20 MA1630.1 oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20 Znf281 0.715 0.420 16 11 10 17 0.5882 0.6250 0.9091 R 6 
 Host name	pedagogix
 Job started	2020-04-13.230833
 Job done	2020-04-13.230900
 Seconds	3.96
	user	3.96
	system	0.61
	cuser	21.39
;	csystem	1.43