One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m20/peak-motifs_oligos_7nt_mkv4_m20_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m20_shift1 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m20_shift1 (oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20)
; oligos_7nt_mkv4_m20 (oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20); m=0 (reference); ncol1=16; shift=1; ncol=20; -csCGCCCCGCCCCCsc--- ; Alignment reference a 0 14 21 10 2 2 3 6 2 2 2 2 4 10 5 18 16 0 0 0 c 0 105 91 159 12 177 169 163 186 12 181 173 169 158 154 71 103 0 0 0 g 0 45 55 19 164 11 18 20 4 172 9 17 16 17 28 72 47 0 0 0 t 0 31 28 7 17 5 5 6 3 9 3 3 6 10 8 34 29 0 0 0

MA0685.1_shift1 (SP4)
; oligos_7nt_mkv4_m20 versus MA0685.1 (SP4); m=1/27; ncol2=17; w=16; offset=0; strand=D; shift=1; score=0.713328; -ywrGCCACGCCCmCtyy-- ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 967.0 0 0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 1180.0 0 0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 556.0 0 0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0 1509.0 0 0

MA0516.2_shift0 (SP2)
; oligos_7nt_mkv4_m20 versus MA0516.2 (SP2); m=2/27; ncol2=17; w=16; offset=-1; strand=D; shift=0; score=0.709533; mTAAGyCCCGCCCmCyy--- ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 0 0 0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 0 0 0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 0 0 0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0 0 0 0

MA0079.4_shift1 (SP1)
; oligos_7nt_mkv4_m20 versus MA0079.4 (SP1); m=3/27; ncol2=15; w=15; offset=0; strand=D; shift=1; score=0.708686; -ywrRCCACGCCCmCh---- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 0 0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 0 0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 0 0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0 0 0 0

MA0746.2_shift3 (SP3)
; oligos_7nt_mkv4_m20 versus MA0746.2 (SP3); m=4/27; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.66951; ---srCCACGCCCmCy---- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 0 0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 0 0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 0 0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0 0 0 0

MA1513.1_shift4 (KLF15)
; oligos_7nt_mkv4_m20 versus MA1513.1 (KLF15); m=5/27; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.645151; ----scCCCGCCCcs----- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0 0

MA0740.1_shift3 (KLF14)
; oligos_7nt_mkv4_m20 versus MA0740.1 (KLF14); m=6/27; ncol2=14; w=14; offset=2; strand=D; shift=3; score=0.643916; ---krcCACGCCCmYyt--- ; cor=; Ncor= a 0 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 0 0 0 c 0 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 0 0 0 g 0 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 0 0 0 t 0 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0 0 0 0

MA1564.1_shift4 (SP9)
; oligos_7nt_mkv4_m20 versus MA1564.1 (SP9); m=7/27; ncol2=12; w=12; offset=3; strand=D; shift=4; score=0.634894; ----rcCmCGCCCmcy---- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 0 0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 0 0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 0 0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0 0 0 0

MA1653.1_shift3 (ZNF148)
; oligos_7nt_mkv4_m20 versus MA1653.1 (ZNF148); m=8/27; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.612382; ---ysCCCCTCCCcc----- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0 0 0

MA0753.2_shift2 (ZNF740)
; oligos_7nt_mkv4_m20 versus MA0753.2 (ZNF740); m=9/27; ncol2=13; w=13; offset=1; strand=D; shift=2; score=0.610937; --cyrCCCCCCCCAc----- ; cor=; Ncor= a 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 0 0 0 c 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 0 0 0 g 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 0 0 0 t 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0 0 0 0

MA0741.1_shift4 (KLF16)
; oligos_7nt_mkv4_m20 versus MA0741.1 (KLF16); m=10/27; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.598925; ----gmCMCgCCCMC----- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0 0 0

MA0747.1_shift4 (SP8)
; oligos_7nt_mkv4_m20 versus MA0747.1 (SP8); m=11/27; ncol2=12; w=12; offset=3; strand=D; shift=4; score=0.596898; ----rmCACgCCCmCy---- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0 0 0

MA0039.4_shift3 (KLF4)
; oligos_7nt_mkv4_m20 versus MA0039.4 (KLF4); m=12/27; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.574848; ---ssCCCCACCChs----- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0 0 0

MA0599.1_shift4 (KLF5)
; oligos_7nt_mkv4_m20 versus MA0599.1 (KLF5); m=13/27; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.564716; ----gCCMCrCCCh------ ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0 0 0

MA1512.1_shift4 (KLF11)
; oligos_7nt_mkv4_m20 versus MA1512.1 (KLF11); m=14/27; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.556925; ----gcCACGCCCmC----- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0 0 0

MA1515.1_shift3 (KLF2)
; oligos_7nt_mkv4_m20 versus MA1515.1 (KLF2); m=15/27; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.545363; ---srCCmCrCCCw------ ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0 0 0

MA1522.1_shift3 (MAZ)
; oligos_7nt_mkv4_m20 versus MA1522.1 (MAZ); m=16/27; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.52285; ---ssCCCCTCCcc------ ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0 0 0 0

MA1511.1_shift4 (KLF10)
; oligos_7nt_mkv4_m20 versus MA1511.1 (KLF10); m=17/27; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.518247; ----gmCACrCCCmy----- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0 0 0

MA0162.4_shift5 (EGR1)
; oligos_7nt_mkv4_m20 versus MA0162.4 (EGR1); m=18/27; ncol2=14; w=12; offset=4; strand=D; shift=5; score=0.516278; -----ccmCGCCCACgCms- ; cor=; Ncor= a 0 0 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 0 c 0 0 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 0 g 0 0 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 0 t 0 0 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0 0

MA1517.1_shift3 (KLF6)
; oligos_7nt_mkv4_m20 versus MA1517.1 (KLF6); m=19/27; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.511375; ---srcCACRCCCm------ ; cor=; Ncor= a 0 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 0 0 c 0 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 0 0 g 0 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 0 0 t 0 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0 0 0

MA1516.1_shift3 (KLF3)
; oligos_7nt_mkv4_m20 versus MA1516.1 (KLF3); m=20/27; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.499334; ---grCCrCGCCCw------ ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0 0 0 0

MA1627.1_shift5 (Wt1)
; oligos_7nt_mkv4_m20 versus MA1627.1 (Wt1); m=21/27; ncol2=14; w=12; offset=4; strand=D; shift=5; score=0.484356; -----cycCTCCCCCACmc- ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 1675.0 520.0 0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 1350.0 2023.0 0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 928.0 1038.0 0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 738.0 1110.0 0

MA0732.1_shift5 (EGR3)
; oligos_7nt_mkv4_m20 versus MA0732.1 (EGR3); m=22/27; ncol2=15; w=12; offset=4; strand=D; shift=5; score=0.469733; -----yhmCGCCCMCGCAyt ; cor=; Ncor= a 0 0 0 0 0 337.0 444.0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 406.0 396.0 c 0 0 0 0 0 645.0 485.0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 600.0 346.0 g 0 0 0 0 0 278.0 191.0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 110.0 230.0 t 0 0 0 0 0 470.0 540.0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 549.0 683.0

MA1578.1_shift7 (VEZF1)
; oligos_7nt_mkv4_m20 versus MA1578.1 (VEZF1); m=23/27; ncol2=10; w=10; offset=6; strand=D; shift=7; score=0.441402; -------CCCCCCmytw--- ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 0 0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 0 0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0 0 0

MA1102.2_rc_shift7 (CTCFL_rc)
; oligos_7nt_mkv4_m20 versus MA1102.2_rc (CTCFL_rc); m=24/27; ncol2=12; w=10; offset=6; strand=R; shift=7; score=0.437352; -------scGCCCCCTGsy- ; cor=; Ncor= a 0 0 0 0 0 0 0 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 c 0 0 0 0 0 0 0 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 g 0 0 0 0 0 0 0 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 t 0 0 0 0 0 0 0 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0

MA0733.1_shift5 (EGR4)
; oligos_7nt_mkv4_m20 versus MA0733.1 (EGR4); m=25/27; ncol2=16; w=12; offset=4; strand=D; shift=5; score=0.434737; -----yymCGCCCACGCAhw ; cor=; Ncor= a 0 0 0 0 0 1167.0 1143.0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 1721.0 1483.0 c 0 0 0 0 0 1459.0 1664.0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 1399.0 819.0 g 0 0 0 0 0 1004.0 527.0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 409.0 655.0 t 0 0 0 0 0 1953.0 2131.0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 1778.0 2762.0

MA0472.2_shift7 (EGR2)
; oligos_7nt_mkv4_m20 versus MA0472.2 (EGR2); m=26/27; ncol2=11; w=10; offset=6; strand=D; shift=7; score=0.433491; -------mCGCCCACGCa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 c 0 0 0 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 g 0 0 0 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 t 0 0 0 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0

MA1630.1_rc_shift7 (Znf281_rc)
; oligos_7nt_mkv4_m20 versus MA1630.1_rc (Znf281_rc); m=27/27; ncol2=11; w=10; offset=6; strand=R; shift=7; score=0.420458; -------CcTCCCCCAcc-- ; cor=; Ncor= a 0 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 c 0 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 g 0 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 t 0 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m20_shift1 (oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20)				; oligos_7nt_mkv4_m20 (oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20); m=0 (reference); ncol1=16; shift=1; ncol=20; -csCGCCCCGCCCCCsc--- ; Alignment reference a 0 14 21 10 2 2 3 6 2 2 2 2 4 10 5 18 16 0 0 0 c 0 105 91 159 12 177 169 163 186 12 181 173 169 158 154 71 103 0 0 0 g 0 45 55 19 164 11 18 20 4 172 9 17 16 17 28 72 47 0 0 0 t 0 31 28 7 17 5 5 6 3 9 3 3 6 10 8 34 29 0 0 0
MA0685.1_shift1 (SP4)				; oligos_7nt_mkv4_m20 versus MA0685.1 (SP4); m=1/27; ncol2=17; w=16; offset=0; strand=D; shift=1; score=0.713328; -ywrGCCACGCCCmCtyy-- ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 967.0 0 0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 1180.0 0 0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 556.0 0 0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0 1509.0 0 0
MA0516.2_shift0 (SP2)				; oligos_7nt_mkv4_m20 versus MA0516.2 (SP2); m=2/27; ncol2=17; w=16; offset=-1; strand=D; shift=0; score=0.709533; mTAAGyCCCGCCCmCyy--- ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 0 0 0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 0 0 0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 0 0 0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0 0 0 0
MA0079.4_shift1 (SP1)				; oligos_7nt_mkv4_m20 versus MA0079.4 (SP1); m=3/27; ncol2=15; w=15; offset=0; strand=D; shift=1; score=0.708686; -ywrRCCACGCCCmCh---- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 0 0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 0 0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 0 0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0 0 0 0
MA0746.2_shift3 (SP3)				; oligos_7nt_mkv4_m20 versus MA0746.2 (SP3); m=4/27; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.66951; ---srCCACGCCCmCy---- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 0 0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 0 0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 0 0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0 0 0 0
MA1513.1_shift4 (KLF15)				; oligos_7nt_mkv4_m20 versus MA1513.1 (KLF15); m=5/27; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.645151; ----scCCCGCCCcs----- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0 0
MA0740.1_shift3 (KLF14)				; oligos_7nt_mkv4_m20 versus MA0740.1 (KLF14); m=6/27; ncol2=14; w=14; offset=2; strand=D; shift=3; score=0.643916; ---krcCACGCCCmYyt--- ; cor=; Ncor= a 0 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 0 0 0 c 0 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 0 0 0 g 0 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 0 0 0 t 0 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0 0 0 0
MA1564.1_shift4 (SP9)				; oligos_7nt_mkv4_m20 versus MA1564.1 (SP9); m=7/27; ncol2=12; w=12; offset=3; strand=D; shift=4; score=0.634894; ----rcCmCGCCCmcy---- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 0 0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 0 0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 0 0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0 0 0 0
MA1653.1_shift3 (ZNF148)				; oligos_7nt_mkv4_m20 versus MA1653.1 (ZNF148); m=8/27; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.612382; ---ysCCCCTCCCcc----- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0 0 0
MA0753.2_shift2 (ZNF740)				; oligos_7nt_mkv4_m20 versus MA0753.2 (ZNF740); m=9/27; ncol2=13; w=13; offset=1; strand=D; shift=2; score=0.610937; --cyrCCCCCCCCAc----- ; cor=; Ncor= a 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 0 0 0 c 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 0 0 0 g 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 0 0 0 t 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0 0 0 0
MA0741.1_shift4 (KLF16)				; oligos_7nt_mkv4_m20 versus MA0741.1 (KLF16); m=10/27; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.598925; ----gmCMCgCCCMC----- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0 0 0
MA0747.1_shift4 (SP8)				; oligos_7nt_mkv4_m20 versus MA0747.1 (SP8); m=11/27; ncol2=12; w=12; offset=3; strand=D; shift=4; score=0.596898; ----rmCACgCCCmCy---- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0 0 0
MA0039.4_shift3 (KLF4)				; oligos_7nt_mkv4_m20 versus MA0039.4 (KLF4); m=12/27; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.574848; ---ssCCCCACCChs----- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0 0 0
MA0599.1_shift4 (KLF5)				; oligos_7nt_mkv4_m20 versus MA0599.1 (KLF5); m=13/27; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.564716; ----gCCMCrCCCh------ ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0 0 0
MA1512.1_shift4 (KLF11)				; oligos_7nt_mkv4_m20 versus MA1512.1 (KLF11); m=14/27; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.556925; ----gcCACGCCCmC----- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0 0 0
MA1515.1_shift3 (KLF2)				; oligos_7nt_mkv4_m20 versus MA1515.1 (KLF2); m=15/27; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.545363; ---srCCmCrCCCw------ ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0 0 0
MA1522.1_shift3 (MAZ)				; oligos_7nt_mkv4_m20 versus MA1522.1 (MAZ); m=16/27; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.52285; ---ssCCCCTCCcc------ ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0 0 0 0
MA1511.1_shift4 (KLF10)				; oligos_7nt_mkv4_m20 versus MA1511.1 (KLF10); m=17/27; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.518247; ----gmCACrCCCmy----- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0 0 0
MA0162.4_shift5 (EGR1)				; oligos_7nt_mkv4_m20 versus MA0162.4 (EGR1); m=18/27; ncol2=14; w=12; offset=4; strand=D; shift=5; score=0.516278; -----ccmCGCCCACgCms- ; cor=; Ncor= a 0 0 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 0 c 0 0 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 0 g 0 0 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 0 t 0 0 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0 0
MA1517.1_shift3 (KLF6)				; oligos_7nt_mkv4_m20 versus MA1517.1 (KLF6); m=19/27; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.511375; ---srcCACRCCCm------ ; cor=; Ncor= a 0 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 0 0 c 0 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 0 0 g 0 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 0 0 t 0 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0 0 0
MA1516.1_shift3 (KLF3)				; oligos_7nt_mkv4_m20 versus MA1516.1 (KLF3); m=20/27; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.499334; ---grCCrCGCCCw------ ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0 0 0 0
MA1627.1_shift5 (Wt1)				; oligos_7nt_mkv4_m20 versus MA1627.1 (Wt1); m=21/27; ncol2=14; w=12; offset=4; strand=D; shift=5; score=0.484356; -----cycCTCCCCCACmc- ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 1675.0 520.0 0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 1350.0 2023.0 0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 928.0 1038.0 0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 738.0 1110.0 0
MA0732.1_shift5 (EGR3)				; oligos_7nt_mkv4_m20 versus MA0732.1 (EGR3); m=22/27; ncol2=15; w=12; offset=4; strand=D; shift=5; score=0.469733; -----yhmCGCCCMCGCAyt ; cor=; Ncor= a 0 0 0 0 0 337.0 444.0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 406.0 396.0 c 0 0 0 0 0 645.0 485.0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 600.0 346.0 g 0 0 0 0 0 278.0 191.0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 110.0 230.0 t 0 0 0 0 0 470.0 540.0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 549.0 683.0
MA1578.1_shift7 (VEZF1)				; oligos_7nt_mkv4_m20 versus MA1578.1 (VEZF1); m=23/27; ncol2=10; w=10; offset=6; strand=D; shift=7; score=0.441402; -------CCCCCCmytw--- ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 0 0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 0 0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0 0 0
MA1102.2_rc_shift7 (CTCFL_rc)				; oligos_7nt_mkv4_m20 versus MA1102.2_rc (CTCFL_rc); m=24/27; ncol2=12; w=10; offset=6; strand=R; shift=7; score=0.437352; -------scGCCCCCTGsy- ; cor=; Ncor= a 0 0 0 0 0 0 0 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 c 0 0 0 0 0 0 0 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 g 0 0 0 0 0 0 0 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 t 0 0 0 0 0 0 0 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0
MA0733.1_shift5 (EGR4)				; oligos_7nt_mkv4_m20 versus MA0733.1 (EGR4); m=25/27; ncol2=16; w=12; offset=4; strand=D; shift=5; score=0.434737; -----yymCGCCCACGCAhw ; cor=; Ncor= a 0 0 0 0 0 1167.0 1143.0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 1721.0 1483.0 c 0 0 0 0 0 1459.0 1664.0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 1399.0 819.0 g 0 0 0 0 0 1004.0 527.0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 409.0 655.0 t 0 0 0 0 0 1953.0 2131.0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 1778.0 2762.0
MA0472.2_shift7 (EGR2)				; oligos_7nt_mkv4_m20 versus MA0472.2 (EGR2); m=26/27; ncol2=11; w=10; offset=6; strand=D; shift=7; score=0.433491; -------mCGCCCACGCa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 c 0 0 0 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 g 0 0 0 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 t 0 0 0 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0
MA1630.1_rc_shift7 (Znf281_rc)				; oligos_7nt_mkv4_m20 versus MA1630.1_rc (Znf281_rc); m=27/27; ncol2=11; w=10; offset=6; strand=R; shift=7; score=0.420458; -------CcTCCCCCAcc-- ; cor=; Ncor= a 0 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 c 0 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 g 0 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 t 0 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0