One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m21/peak-motifs_oligos_7nt_mkv4_m21.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m21/peak-motifs_oligos_7nt_mkv4_m21_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m21_shift3 ; 14 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv4_m21_shift3 (oligos_7nt_mkv4_m21oligos_7nt_mkv4_m21)     
; oligos_7nt_mkv4_m21 (oligos_7nt_mkv4_m21oligos_7nt_mkv4_m21); m=0 (reference); ncol1=12; shift=3; ncol=17; ---csCCCAGCCCsg--
; Alignment reference
a	0	0	0	74	39	4	2	0	256	3	1	1	0	50	47	0	0
c	0	0	0	130	95	319	324	327	63	16	335	329	329	122	82	0	0
g	0	0	0	79	157	8	11	10	19	313	2	6	8	105	156	0	0
t	0	0	0	55	47	7	1	1	0	6	0	2	1	61	53	0	0
MA1513.1_shift4 (KLF15) 
; oligos_7nt_mkv4_m21 versus MA1513.1 (KLF15); m=1/13; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.782547; ----scCCCGCCCcs--
; cor=; Ncor=
a	0	0	0	0	1184.0	937.0	40.0	93.0	0.0	0.0	11.0	55.0	12.0	1566.0	1067.0	0	0
c	0	0	0	0	2903.0	6506.0	11234.0	10940.0	11368.0	0.0	11345.0	10954.0	11254.0	6267.0	5013.0	0	0
g	0	0	0	0	5538.0	2117.0	86.0	333.0	1.0	11369.0	2.0	359.0	100.0	1934.0	3124.0	0	0
t	0	0	0	0	1744.0	1809.0	9.0	3.0	0.0	0.0	11.0	1.0	3.0	1602.0	2165.0	0	0
MA0039.4_shift3 (KLF4) 
; oligos_7nt_mkv4_m21 versus MA0039.4 (KLF4); m=2/13; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.727447; ---ssCCCCACCChs--
; cor=; Ncor=
a	0	0	0	12570.0	11487.0	2465.0	2105.0	7021.0	1173.0	45602.0	852.0	1617.0	1202.0	16264.0	9959.0	0	0
c	0	0	0	17520.0	14038.0	49209.0	47865.0	45405.0	52875.0	161.0	52366.0	51112.0	51045.0	18249.0	19217.0	0	0
g	0	0	0	14243.0	18473.0	1583.0	1214.0	1422.0	793.0	6598.0	1470.0	1870.0	1005.0	6292.0	14422.0	0	0
t	0	0	0	11484.0	11819.0	2560.0	4633.0	1969.0	976.0	3456.0	1129.0	1218.0	2565.0	15012.0	12219.0	0	0
MA1653.1_shift3 (ZNF148) 
; oligos_7nt_mkv4_m21 versus MA1653.1 (ZNF148); m=3/13; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.708643; ---ysCCCCTCCCcc--
; cor=; Ncor=
a	0	0	0	1399.0	1263.0	82.0	132.0	136.0	89.0	133.0	66.0	352.0	442.0	846.0	841.0	0	0
c	0	0	0	4593.0	4057.0	10799.0	10396.0	10526.0	10833.0	14.0	10954.0	9922.0	9283.0	7239.0	7114.0	0	0
g	0	0	0	2241.0	3215.0	205.0	471.0	401.0	211.0	1012.0	112.0	460.0	392.0	1924.0	2064.0	0	0
t	0	0	0	2966.0	2664.0	113.0	200.0	136.0	66.0	10040.0	67.0	465.0	1082.0	1190.0	1180.0	0	0
MA1515.1_shift3 (KLF2) 
; oligos_7nt_mkv4_m21 versus MA1515.1 (KLF2); m=4/13; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.661914; ---srCCmCrCCCw---
; cor=; Ncor=
a	0	0	0	1054.0	2510.0	741.0	403.0	4622.0	0.0	1702.0	0.0	128.0	68.0	1838.0	0	0	0
c	0	0	0	1376.0	1103.0	4622.0	4622.0	2265.0	4622.0	274.0	4622.0	4622.0	4622.0	1142.0	0	0	0
g	0	0	0	1320.0	2112.0	495.0	186.0	1060.0	0.0	2920.0	49.0	195.0	105.0	389.0	0	0	0
t	0	0	0	872.0	433.0	346.0	312.0	214.0	78.0	167.0	22.0	9.0	444.0	1253.0	0	0	0
MA0599.1_shift4 (KLF5) 
; oligos_7nt_mkv4_m21 versus MA0599.1 (KLF5); m=5/13; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.659856; ----gCCMCrCCCh---
; cor=; Ncor=
a	0	0	0	0	1429.0	0.0	0.0	3477.0	0.0	5051.0	0.0	0.0	0.0	3915.0	0	0	0
c	0	0	0	0	2023.0	11900.0	12008.0	9569.0	13611.0	0.0	13611.0	13611.0	13135.0	5595.0	0	0	0
g	0	0	0	0	7572.0	0.0	0.0	0.0	0.0	5182.0	0.0	0.0	0.0	0.0	0	0	0
t	0	0	0	0	2587.0	1711.0	1603.0	565.0	0.0	3378.0	0.0	0.0	476.0	4101.0	0	0	0
MA0746.2_shift3 (SP3) 
; oligos_7nt_mkv4_m21 versus MA0746.2 (SP3); m=6/13; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.648829; ---srCCACGCCCmCy-
; cor=; Ncor=
a	0	0	0	1267.0	2146.0	664.0	160.0	5253.0	6.0	465.0	0.0	0.0	2.0	3430.0	556.0	1516.0	0
c	0	0	0	1884.0	531.0	6591.0	6591.0	1338.0	6591.0	0.0	6591.0	6591.0	6591.0	3160.0	5116.0	2608.0	0
g	0	0	0	1895.0	4445.0	226.0	54.0	2.0	0.0	6591.0	0.0	0.0	2.0	39.0	297.0	524.0	0
t	0	0	0	1545.0	421.0	345.0	202.0	11.0	12.0	504.0	0.0	9.0	718.0	552.0	1475.0	1943.0	0
MA1516.1_shift3 (KLF3) 
; oligos_7nt_mkv4_m21 versus MA1516.1 (KLF3); m=7/13; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.642793; ---grCCrCGCCCw---
; cor=; Ncor=
a	0	0	0	7717.0	24771.0	1442.0	298.0	26757.0	2261.0	4245.0	202.0	83.0	77.0	17029.0	0	0	0
c	0	0	0	2655.0	615.0	43259.0	43259.0	707.0	43259.0	334.0	43259.0	43259.0	43259.0	10099.0	0	0	0
g	0	0	0	26568.0	18489.0	1954.0	248.0	16503.0	21.0	43259.0	31.0	29.0	48.0	1514.0	0	0	0
t	0	0	0	6319.0	207.0	705.0	335.0	419.0	1409.0	1212.0	0.0	0.0	1218.0	14617.0	0	0	0
MA1564.1_shift4 (SP9) 
; oligos_7nt_mkv4_m21 versus MA1564.1 (SP9); m=8/13; ncol2=12; w=11; offset=1; strand=D; shift=4; score=0.592929; ----rcCmCGCCCmcy-
; cor=; Ncor=
a	0	0	0	0	834.0	566.0	321.0	2451.0	2.0	211.0	22.0	0.0	39.0	1192.0	188.0	420.0	0
c	0	0	0	0	440.0	2451.0	2451.0	1127.0	2451.0	200.0	2451.0	2451.0	2451.0	1259.0	1863.0	1167.0	0
g	0	0	0	0	952.0	309.0	113.0	56.0	17.0	2451.0	0.0	0.0	24.0	38.0	191.0	204.0	0
t	0	0	0	0	226.0	518.0	284.0	96.0	9.0	173.0	14.0	30.0	412.0	353.0	588.0	660.0	0
MA0079.4_shift1 (SP1) 
; oligos_7nt_mkv4_m21 versus MA0079.4 (SP1); m=9/13; ncol2=15; w=12; offset=-2; strand=D; shift=1; score=0.561519; -ywrRCCACGCCCmCh-
; cor=; Ncor=
a	0	7866.0	28233.0	28895.0	14584.0	962.0	55.0	42154.0	0.0	959.0	0.0	8.0	0.0	24666.0	1195.0	12598.0	0
c	0	13273.0	1872.0	1530.0	0.0	48854.0	49649.0	12672.0	49660.0	0.0	49666.0	49662.0	48772.0	24196.0	37612.0	15606.0	0
g	0	9691.0	999.0	19477.0	37543.0	82.0	0.0	0.0	0.0	48957.0	0.0	0.0	0.0	15.0	919.0	3044.0	0
t	0	18833.0	19877.0	1184.0	153.0	124.0	1670.0	0.0	31.0	867.0	17.0	0.0	1440.0	1373.0	10717.0	18415.0	0
MA1599.1_shift1 (ZNF682) 
; oligos_7nt_mkv4_m21 versus MA1599.1 (ZNF682); m=10/13; ncol2=16; w=12; offset=-2; strand=D; shift=1; score=0.536803; -crGGCyAAGCCCCwrt
; cor=; Ncor=
a	0	205.0	304.0	110.0	103.0	100.0	48.0	953.0	999.0	6.0	13.0	5.0	7.0	66.0	367.0	324.0	192.0
c	0	423.0	234.0	85.0	42.0	795.0	597.0	72.0	31.0	7.0	999.0	1033.0	1034.0	896.0	117.0	254.0	260.0
g	0	214.0	349.0	774.0	877.0	105.0	55.0	20.0	22.0	1038.0	13.0	9.0	10.0	32.0	118.0	300.0	194.0
t	0	216.0	171.0	89.0	36.0	58.0	358.0	13.0	6.0	7.0	33.0	11.0	7.0	64.0	456.0	180.0	412.0
MA0516.2_shift0 (SP2) 
; oligos_7nt_mkv4_m21 versus MA0516.2 (SP2); m=11/13; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.527906; mTAAGyCCCGCCCmCyy
; cor=; Ncor=
a	256.0	53.0	613.0	753.0	54.0	34.0	14.0	16.0	4.0	82.0	0.0	5.0	23.0	402.0	22.0	109.0	150.0
c	308.0	171.0	76.0	84.0	127.0	456.0	774.0	786.0	788.0	52.0	795.0	793.0	774.0	390.0	679.0	221.0	203.0
g	123.0	57.0	0.0	33.0	791.0	8.0	1.0	13.0	22.0	780.0	0.0	26.0	0.0	22.0	1.0	0.0	88.0
t	106.0	608.0	180.0	67.0	43.0	327.0	0.0	8.0	12.0	45.0	18.0	7.0	27.0	17.0	101.0	503.0	352.0
MA0685.1_shift1 (SP4) 
; oligos_7nt_mkv4_m21 versus MA0685.1 (SP4); m=12/13; ncol2=17; w=12; offset=-2; strand=D; shift=1; score=0.497986; -ywrGCCACGCCCmCty
; cor=; Ncor=
a	0	621.0	2173.0	2600.0	939.0	260.0	2.0	3004.0	2.0	10.0	2.0	3.0	0.0	1840.0	113.0	1140.0	582.0
c	0	1405.0	156.0	146.0	6.0	4443.0	4492.0	991.0	4662.0	14.0	4681.0	4732.0	4667.0	2430.0	4276.0	897.0	1206.0
g	0	823.0	65.0	1639.0	4774.0	0.0	5.0	3.0	0.0	5444.0	4.0	2.0	3.0	9.0	21.0	234.0	363.0
t	0	1622.0	1809.0	199.0	16.0	4.0	135.0	0.0	0.0	55.0	0.0	0.0	72.0	67.0	1067.0	3043.0	2078.0
MA0597.1_shift7 (THAP1) 
; oligos_7nt_mkv4_m21 versus MA0597.1 (THAP1); m=13/13; ncol2=9; w=8; offset=4; strand=D; shift=7; score=0.460976; -------ytGCCMkya-
; cor=; Ncor=
a	0	0	0	0	0	0	0	18.0	15.0	20.0	7.0	3.0	58.0	47.0	30.0	116.0	0
c	0	0	0	0	0	0	0	93.0	47.0	0.0	182.0	195.0	136.0	17.0	71.0	34.0	0
g	0	0	0	0	0	0	0	27.0	12.0	137.0	0.0	0.0	1.0	77.0	41.0	17.0	0
t	0	0	0	0	0	0	0	61.0	125.0	42.0	10.0	1.0	4.0	58.0	57.0	32.0	0