One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m22/peak-motifs_oligos_7nt_mkv4_m22.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m22/peak-motifs_oligos_7nt_mkv4_m22_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m22_shift0 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv4_m22_shift0 (oligos_7nt_mkv4_m22oligos_7nt_mkv4_m22)     
; oligos_7nt_mkv4_m22 (oligos_7nt_mkv4_m22oligos_7nt_mkv4_m22); m=0 (reference); ncol1=11; shift=0; ncol=18; ccACATTCCwk-------
; Alignment reference
a	60	50	262	6	267	1	7	8	3	82	49	0	0	0	0	0	0	0
c	82	118	2	235	1	1	3	256	253	49	66	0	0	0	0	0	0	0
g	63	54	4	10	2	1	1	0	11	41	86	0	0	0	0	0	0	0
t	65	48	2	19	0	267	259	6	3	98	69	0	0	0	0	0	0	0
MA0809.2_shift0 (TEAD4) 
; oligos_7nt_mkv4_m22 versus MA0809.2 (TEAD4); m=1/5; ncol2=12; w=11; offset=0; strand=D; shift=0; score=0.874421; ycACATTCCAgs------
; cor=; Ncor=
a	18932.0	17306.0	61263.0	7543.0	74797.0	965.0	2673.0	1366.0	1314.0	61802.0	16617.0	19272.0	0	0	0	0	0	0
c	22343.0	26577.0	2414.0	66205.0	1218.0	1129.0	1176.0	72555.0	75066.0	3874.0	13864.0	20301.0	0	0	0	0	0	0
g	15111.0	15427.0	11265.0	3295.0	569.0	1025.0	2100.0	1580.0	212.0	1191.0	32220.0	22630.0	0	0	0	0	0	0
t	21700.0	18776.0	3144.0	1043.0	1502.0	74967.0	72137.0	2585.0	1494.0	11219.0	15385.0	15883.0	0	0	0	0	0	0
MA1121.1_shift0 (TEAD2) 
; oligos_7nt_mkv4_m22 versus MA1121.1 (TEAD2); m=2/5; ncol2=13; w=11; offset=0; strand=D; shift=0; score=0.835957; hcACATTCCwgsc-----
; cor=; Ncor=
a	137.0	88.0	441.0	39.0	517.0	2.0	15.0	8.0	8.0	263.0	112.0	111.0	109.0	0	0	0	0	0
c	145.0	238.0	17.0	478.0	5.0	10.0	8.0	500.0	513.0	60.0	111.0	172.0	221.0	0	0	0	0	0
g	112.0	81.0	70.0	14.0	11.0	6.0	9.0	10.0	3.0	56.0	207.0	147.0	117.0	0	0	0	0	0
t	148.0	135.0	14.0	11.0	9.0	524.0	510.0	24.0	18.0	163.0	112.0	112.0	95.0	0	0	0	0	0
MA0090.3_shift0 (TEAD1) 
; oligos_7nt_mkv4_m22 versus MA0090.3 (TEAD1); m=3/5; ncol2=13; w=11; offset=0; strand=D; shift=0; score=0.792394; hyACATTCCAGsm-----
; cor=; Ncor=
a	17689.0	16651.0	58030.0	6096.0	68106.0	535.0	4976.0	1348.0	702.0	57190.0	9124.0	13252.0	19194.0	0	0	0	0	0
c	19272.0	22059.0	1248.0	61276.0	646.0	700.0	622.0	66953.0	67635.0	1729.0	6215.0	20002.0	21358.0	0	0	0	0	0
g	14429.0	12053.0	9179.0	1923.0	946.0	646.0	1210.0	765.0	374.0	2051.0	47856.0	26525.0	16344.0	0	0	0	0	0
t	19008.0	19635.0	1941.0	1103.0	700.0	68517.0	63590.0	1332.0	1687.0	9428.0	7203.0	10619.0	13502.0	0	0	0	0	0
MA0808.1_shift2 (TEAD3) 
; oligos_7nt_mkv4_m22 versus MA0808.1 (TEAD3); m=4/5; ncol2=8; w=8; offset=2; strand=D; shift=2; score=0.688668; --rCATTCCw--------
; cor=; Ncor=
a	0	0	12530.0	2524.0	21444.0	0.0	4566.0	0.0	0.0	21444.0	0	0	0	0	0	0	0	0
c	0	0	66.0	18920.0	0.0	0.0	23.0	21444.0	21444.0	1039.0	0	0	0	0	0	0	0	0
g	0	0	8913.0	441.0	0.0	0.0	969.0	0.0	0.0	8654.0	0	0	0	0	0	0	0	0
t	0	0	1109.0	0.0	0.0	21444.0	16878.0	0.0	4.0	13663.0	0	0	0	0	0	0	0	0
MA1600.1_shift0 (ZNF684) 
; oligos_7nt_mkv4_m22 versus MA1600.1 (ZNF684); m=5/5; ncol2=18; w=11; offset=0; strand=D; shift=0; score=0.446219; ryACAGTCCACCCCTTkr
; cor=; Ncor=
a	524.0	82.0	1238.0	9.0	1184.0	60.0	9.0	13.0	40.0	1012.0	3.0	44.0	7.0	0.0	249.0	56.0	216.0	606.0
c	168.0	403.0	24.0	1253.0	11.0	216.0	14.0	1236.0	1221.0	9.0	1226.0	1253.0	1229.0	1263.0	129.0	59.0	168.0	201.0
g	362.0	314.0	68.0	9.0	110.0	1135.0	59.0	25.0	2.0	57.0	63.0	10.0	7.0	0.0	18.0	14.0	514.0	326.0
t	206.0	721.0	19.0	19.0	131.0	74.0	1259.0	10.0	67.0	220.0	61.0	6.0	92.0	3.0	1107.0	1224.0	619.0	127.0