One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m26/peak-motifs_oligos_7nt_mkv4_m26.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m26/peak-motifs_oligos_7nt_mkv4_m26_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m26_shift2 ; 7 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv4_m26_shift2 (oligos_7nt_mkv4_m26oligos_7nt_mkv4_m26)     
; oligos_7nt_mkv4_m26 (oligos_7nt_mkv4_m26oligos_7nt_mkv4_m26); m=0 (reference); ncol1=12; shift=2; ncol=14; --ssGCGGGCGCss
; Alignment reference
a	0	0	68	63	6	13	9	14	6	9	7	8	56	51
c	0	0	136	157	33	413	19	66	40	403	14	378	138	131
g	0	0	184	163	401	11	416	351	395	27	419	58	211	205
t	0	0	59	64	7	10	3	16	6	8	7	3	42	60
MA0131.2_rc_shift2 (HINFP_rc) 
; oligos_7nt_mkv4_m26 versus MA0131.2_rc (HINFP_rc); m=1/6; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.714664; --mcGCGGACGytg
; cor=; Ncor=
a	0	0	107.0	97.0	12.0	21.0	3.0	0.0	470.0	10.0	7.0	17.0	53.0	100.0
c	0	0	154.0	188.0	15.0	472.0	0.0	13.0	0.0	484.0	97.0	217.0	113.0	106.0
g	0	0	84.0	55.0	395.0	31.0	413.0	404.0	0.0	14.0	388.0	45.0	131.0	340.0
t	0	0	77.0	85.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	276.0	285.0	23.0
MA0506.1_shift2 (NRF1) 
; oligos_7nt_mkv4_m26 versus MA0506.1 (NRF1); m=2/6; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.671353; --GCGCmTGCGCr-
; cor=; Ncor=
a	0	0	602.0	623.0	196.0	0.0	1514.0	0.0	0.0	0.0	0.0	74.0	2245.0	0
c	0	0	375.0	4001.0	189.0	4016.0	1862.0	403.0	0.0	4338.0	349.0	4550.0	804.0	0
g	0	0	3647.0	0.0	4239.0	468.0	935.0	528.0	4624.0	0.0	4275.0	0.0	1575.0	0
t	0	0	0.0	0.0	0.0	140.0	313.0	3693.0	0.0	286.0	0.0	0.0	0.0	0
MA0162.4_rc_shift0 (EGR1_rc) 
; oligos_7nt_mkv4_m26 versus MA0162.4_rc (EGR1_rc); m=3/6; ncol2=14; w=12; offset=-2; strand=R; shift=0; score=0.620196; skGcGTGGGCGkgg
; cor=; Ncor=
a	5251.0	4909.0	2276.0	2552.0	239.0	759.0	628.0	382.0	368.0	2120.0	797.0	1933.0	4641.0	5280.0
c	7852.0	6345.0	2157.0	20544.0	699.0	2122.0	698.0	1455.0	665.0	22237.0	756.0	3854.0	7211.0	6621.0
g	13686.0	10441.0	25196.0	2806.0	29507.0	5420.0	28958.0	27321.0	29338.0	1131.0	28403.0	10303.0	14749.0	11610.0
t	3809.0	8903.0	969.0	4696.0	153.0	22297.0	314.0	1440.0	227.0	5110.0	642.0	14508.0	3997.0	7087.0
MA1516.1_rc_shift5 (KLF3_rc) 
; oligos_7nt_mkv4_m26 versus MA1516.1_rc (KLF3_rc); m=4/6; ncol2=11; w=9; offset=3; strand=R; shift=5; score=0.471083; -----wGGGCGyGG
; cor=; Ncor=
a	0	0	0	0	0	14617.0	1218.0	0.0	0.0	1212.0	1409.0	419.0	335.0	705.0
c	0	0	0	0	0	1514.0	48.0	29.0	31.0	43259.0	21.0	16503.0	248.0	1954.0
g	0	0	0	0	0	10099.0	43259.0	43259.0	43259.0	334.0	43259.0	707.0	43259.0	43259.0
t	0	0	0	0	0	17029.0	77.0	83.0	202.0	4245.0	2261.0	26757.0	298.0	1442.0
MA1513.1_rc_shift0 (KLF15_rc) 
; oligos_7nt_mkv4_m26 versus MA1513.1_rc (KLF15_rc); m=5/6; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=0.470773; sgGGGCGGGgs---
; cor=; Ncor=
a	2165.0	1602.0	3.0	1.0	11.0	0.0	0.0	3.0	9.0	1809.0	1744.0	0	0	0
c	3124.0	1934.0	100.0	359.0	2.0	11369.0	1.0	333.0	86.0	2117.0	5538.0	0	0	0
g	5013.0	6267.0	11254.0	10954.0	11345.0	0.0	11368.0	10940.0	11234.0	6506.0	2903.0	0	0	0
t	1067.0	1566.0	12.0	55.0	11.0	0.0	0.0	93.0	40.0	937.0	1184.0	0	0	0
MA0632.2_rc_shift6 (TCFL5_rc) 
; oligos_7nt_mkv4_m26 versus MA0632.2_rc (TCFL5_rc); m=6/6; ncol2=10; w=8; offset=4; strand=R; shift=6; score=0.447516; ------gkGCGCGy
; cor=; Ncor=
a	0	0	0	0	0	0	8670.0	25921.0	635.0	0.0	15451.0	0.0	1643.0	9359.0
c	0	0	0	0	0	0	5747.0	19096.0	4594.0	72543.0	0.0	72543.0	0.0	29710.0
g	0	0	0	0	0	0	47538.0	44394.0	72543.0	657.0	57092.0	0.0	72543.0	0.0
t	0	0	0	0	0	0	10588.0	72543.0	1593.0	3520.0	1765.0	1566.0	0.0	72543.0