One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m31/peak-motifs_oligos_7nt_mkv4_m31.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m31/peak-motifs_oligos_7nt_mkv4_m31_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m31_shift4 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m31_shift4 (oligos_7nt_mkv4_m31oligos_7nt_mkv4_m31)
; oligos_7nt_mkv4_m31 (oligos_7nt_mkv4_m31oligos_7nt_mkv4_m31); m=0 (reference); ncol1=12; shift=4; ncol=18; ----rrAAGCCACAsc-- ; Alignment reference a 0 0 0 0 84 78 277 277 22 5 1 284 5 224 58 62 0 0 c 0 0 0 0 70 68 0 6 4 272 275 0 279 30 77 108 0 0 g 0 0 0 0 81 79 4 1 250 5 10 2 2 20 101 63 0 0 t 0 0 0 0 53 63 7 4 12 6 2 2 2 14 52 55 0 0

MA0002.2_rc_shift6 (RUNX1_rc)
; oligos_7nt_mkv4_m31 versus MA0002.2_rc (RUNX1_rc); m=1/6; ncol2=11; w=10; offset=2; strand=R; shift=6; score=0.647567; ------waaCCACAram- ; cor=; Ncor= a 0 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 c 0 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 g 0 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 t 0 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0

MA0479.1_shift3 (FOXH1)
; oligos_7nt_mkv4_m31 versus MA0479.1 (FOXH1); m=2/6; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.615621; ---ybsAATMCACA---- ; cor=; Ncor= a 0 0 0 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 0 c 0 0 0 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 0 g 0 0 0 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0 0

MA1599.1_shift0 (ZNF682)
; oligos_7nt_mkv4_m31 versus MA1599.1 (ZNF682); m=3/6; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.531418; crGGCyAAGCCCCwrt-- ; cor=; Ncor= a 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 0 0 c 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 0 0 g 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 0 0 t 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0 0 0

MA0493.1_shift7 (Klf1)
; oligos_7nt_mkv4_m31 versus MA0493.1 (Klf1); m=4/6; ncol2=11; w=9; offset=3; strand=D; shift=7; score=0.472014; -------rrCCACACCCw ; cor=; Ncor= a 0 0 0 0 0 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 c 0 0 0 0 0 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 g 0 0 0 0 0 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0

MA1511.1_shift8 (KLF10)
; oligos_7nt_mkv4_m31 versus MA1511.1 (KLF10); m=5/6; ncol2=11; w=8; offset=4; strand=D; shift=8; score=0.41699; --------gmCACrCCCm ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 c 0 0 0 0 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 g 0 0 0 0 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 t 0 0 0 0 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0

MA1107.2_shift6 (KLF9)
; oligos_7nt_mkv4_m31 versus MA1107.2 (KLF9); m=6/6; ncol2=16; w=10; offset=2; strand=D; shift=6; score=0.400965; ------crgCCACACCCA ; cor=; Ncor= a 0 0 0 0 0 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 c 0 0 0 0 0 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 g 0 0 0 0 0 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 t 0 0 0 0 0 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m31_shift4 (oligos_7nt_mkv4_m31oligos_7nt_mkv4_m31)				; oligos_7nt_mkv4_m31 (oligos_7nt_mkv4_m31oligos_7nt_mkv4_m31); m=0 (reference); ncol1=12; shift=4; ncol=18; ----rrAAGCCACAsc-- ; Alignment reference a 0 0 0 0 84 78 277 277 22 5 1 284 5 224 58 62 0 0 c 0 0 0 0 70 68 0 6 4 272 275 0 279 30 77 108 0 0 g 0 0 0 0 81 79 4 1 250 5 10 2 2 20 101 63 0 0 t 0 0 0 0 53 63 7 4 12 6 2 2 2 14 52 55 0 0
MA0002.2_rc_shift6 (RUNX1_rc)				; oligos_7nt_mkv4_m31 versus MA0002.2_rc (RUNX1_rc); m=1/6; ncol2=11; w=10; offset=2; strand=R; shift=6; score=0.647567; ------waaCCACAram- ; cor=; Ncor= a 0 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 c 0 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 g 0 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 t 0 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0
MA0479.1_shift3 (FOXH1)				; oligos_7nt_mkv4_m31 versus MA0479.1 (FOXH1); m=2/6; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.615621; ---ybsAATMCACA---- ; cor=; Ncor= a 0 0 0 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 0 c 0 0 0 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 0 g 0 0 0 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0 0
MA1599.1_shift0 (ZNF682)				; oligos_7nt_mkv4_m31 versus MA1599.1 (ZNF682); m=3/6; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.531418; crGGCyAAGCCCCwrt-- ; cor=; Ncor= a 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 0 0 c 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 0 0 g 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 0 0 t 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0 0 0
MA0493.1_shift7 (Klf1)				; oligos_7nt_mkv4_m31 versus MA0493.1 (Klf1); m=4/6; ncol2=11; w=9; offset=3; strand=D; shift=7; score=0.472014; -------rrCCACACCCw ; cor=; Ncor= a 0 0 0 0 0 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 c 0 0 0 0 0 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 g 0 0 0 0 0 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0
MA1511.1_shift8 (KLF10)				; oligos_7nt_mkv4_m31 versus MA1511.1 (KLF10); m=5/6; ncol2=11; w=8; offset=4; strand=D; shift=8; score=0.41699; --------gmCACrCCCm ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 c 0 0 0 0 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 g 0 0 0 0 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 t 0 0 0 0 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0
MA1107.2_shift6 (KLF9)				; oligos_7nt_mkv4_m31 versus MA1107.2 (KLF9); m=6/6; ncol2=16; w=10; offset=2; strand=D; shift=6; score=0.400965; ------crgCCACACCCA ; cor=; Ncor= a 0 0 0 0 0 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 c 0 0 0 0 0 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 g 0 0 0 0 0 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 t 0 0 0 0 0 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0