One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m32/peak-motifs_oligos_7nt_mkv4_m32.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m32/peak-motifs_oligos_7nt_mkv4_m32_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m32_shift2 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m32_shift2 (oligos_7nt_mkv4_m32oligos_7nt_mkv4_m32)
; oligos_7nt_mkv4_m32 (oligos_7nt_mkv4_m32oligos_7nt_mkv4_m32); m=0 (reference); ncol1=12; shift=2; ncol=17; --sgGCCAGGCCss--- ; Alignment reference a 0 0 49 57 8 1 0 235 2 1 0 1 56 38 0 0 0 c 0 0 96 66 29 270 264 20 15 4 266 266 85 84 0 0 0 g 0 0 73 98 225 1 9 18 255 267 4 5 73 114 0 0 0 t 0 0 55 52 11 1 0 0 1 1 3 1 59 37 0 0 0

MA0146.2_shift0 (Zfx)
; oligos_7nt_mkv4_m32 versus MA0146.2 (Zfx); m=1/7; ncol2=14; w=12; offset=-2; strand=D; shift=0; score=0.629218; sssgsCbvGGCCTs--- ; cor=; Ncor= a 50.0 59.0 91.0 72.0 10.0 6.0 30.0 191.0 8.0 0.0 0.0 0.0 0.0 84.0 0 0 0 c 178.0 170.0 151.0 49.0 297.0 361.0 124.0 153.0 2.0 3.0 481.0 480.0 1.0 122.0 0 0 0 g 179.0 173.0 199.0 297.0 144.0 2.0 183.0 122.0 470.0 477.0 0.0 0.0 0.0 218.0 0 0 0 t 70.0 75.0 37.0 61.0 30.0 112.0 144.0 15.0 1.0 1.0 0.0 1.0 480.0 56.0 0 0 0

MA0746.2_shift3 (SP3)
; oligos_7nt_mkv4_m32 versus MA0746.2 (SP3); m=2/7; ncol2=13; w=11; offset=1; strand=D; shift=3; score=0.577914; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA0079.4_shift1 (SP1)
; oligos_7nt_mkv4_m32 versus MA0079.4 (SP1); m=3/7; ncol2=15; w=12; offset=-1; strand=D; shift=1; score=0.571557; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0

MA0740.1_shift3 (KLF14)
; oligos_7nt_mkv4_m32 versus MA0740.1 (KLF14); m=4/7; ncol2=14; w=11; offset=1; strand=D; shift=3; score=0.516022; ---krcCACGCCCmYyt ; cor=; Ncor= a 0 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 c 0 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 g 0 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 t 0 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0

MA0685.1_shift1 (SP4)
; oligos_7nt_mkv4_m32 versus MA0685.1 (SP4); m=5/7; ncol2=17; w=12; offset=-1; strand=D; shift=1; score=0.509446; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0

MA0742.1_shift3 (Klf12)
; oligos_7nt_mkv4_m32 versus MA0742.1 (Klf12); m=6/7; ncol2=15; w=11; offset=1; strand=D; shift=3; score=0.485569; ---GrCCACGCCCwtht ; cor=; Ncor= a 0 0 0 167.0 553.0 19.0 5.0 853.0 9.0 215.0 0.0 0.0 0.0 410.0 238.0 308.0 238.0 c 0 0 0 35.0 11.0 668.0 670.0 27.0 675.0 1.0 687.0 706.0 715.0 120.0 219.0 239.0 186.0 g 0 0 0 1158.0 531.0 8.0 12.0 2.0 0.0 1348.0 0.0 9.0 0.0 0.0 99.0 84.0 117.0 t 0 0 0 225.0 0.0 9.0 3.0 0.0 4.0 16.0 4.0 13.0 13.0 483.0 403.0 290.0 429.0

MA0671.1_shift1 (NFIX)
; oligos_7nt_mkv4_m32 versus MA0671.1 (NFIX); m=7/7; ncol2=9; w=8; offset=-1; strand=D; shift=1; score=0.449178; -sgtGCCArv------- ; cor=; Ncor= a 0 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 0 0 0 0 0 0 0 c 0 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 0 0 0 0 0 0 0 g 0 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 0 0 0 0 0 0 0 t 0 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m32_shift2 (oligos_7nt_mkv4_m32oligos_7nt_mkv4_m32)				; oligos_7nt_mkv4_m32 (oligos_7nt_mkv4_m32oligos_7nt_mkv4_m32); m=0 (reference); ncol1=12; shift=2; ncol=17; --sgGCCAGGCCss--- ; Alignment reference a 0 0 49 57 8 1 0 235 2 1 0 1 56 38 0 0 0 c 0 0 96 66 29 270 264 20 15 4 266 266 85 84 0 0 0 g 0 0 73 98 225 1 9 18 255 267 4 5 73 114 0 0 0 t 0 0 55 52 11 1 0 0 1 1 3 1 59 37 0 0 0
MA0146.2_shift0 (Zfx)				; oligos_7nt_mkv4_m32 versus MA0146.2 (Zfx); m=1/7; ncol2=14; w=12; offset=-2; strand=D; shift=0; score=0.629218; sssgsCbvGGCCTs--- ; cor=; Ncor= a 50.0 59.0 91.0 72.0 10.0 6.0 30.0 191.0 8.0 0.0 0.0 0.0 0.0 84.0 0 0 0 c 178.0 170.0 151.0 49.0 297.0 361.0 124.0 153.0 2.0 3.0 481.0 480.0 1.0 122.0 0 0 0 g 179.0 173.0 199.0 297.0 144.0 2.0 183.0 122.0 470.0 477.0 0.0 0.0 0.0 218.0 0 0 0 t 70.0 75.0 37.0 61.0 30.0 112.0 144.0 15.0 1.0 1.0 0.0 1.0 480.0 56.0 0 0 0
MA0746.2_shift3 (SP3)				; oligos_7nt_mkv4_m32 versus MA0746.2 (SP3); m=2/7; ncol2=13; w=11; offset=1; strand=D; shift=3; score=0.577914; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0
MA0079.4_shift1 (SP1)				; oligos_7nt_mkv4_m32 versus MA0079.4 (SP1); m=3/7; ncol2=15; w=12; offset=-1; strand=D; shift=1; score=0.571557; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0
MA0740.1_shift3 (KLF14)				; oligos_7nt_mkv4_m32 versus MA0740.1 (KLF14); m=4/7; ncol2=14; w=11; offset=1; strand=D; shift=3; score=0.516022; ---krcCACGCCCmYyt ; cor=; Ncor= a 0 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 c 0 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 g 0 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 t 0 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0
MA0685.1_shift1 (SP4)				; oligos_7nt_mkv4_m32 versus MA0685.1 (SP4); m=5/7; ncol2=17; w=12; offset=-1; strand=D; shift=1; score=0.509446; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0
MA0742.1_shift3 (Klf12)				; oligos_7nt_mkv4_m32 versus MA0742.1 (Klf12); m=6/7; ncol2=15; w=11; offset=1; strand=D; shift=3; score=0.485569; ---GrCCACGCCCwtht ; cor=; Ncor= a 0 0 0 167.0 553.0 19.0 5.0 853.0 9.0 215.0 0.0 0.0 0.0 410.0 238.0 308.0 238.0 c 0 0 0 35.0 11.0 668.0 670.0 27.0 675.0 1.0 687.0 706.0 715.0 120.0 219.0 239.0 186.0 g 0 0 0 1158.0 531.0 8.0 12.0 2.0 0.0 1348.0 0.0 9.0 0.0 0.0 99.0 84.0 117.0 t 0 0 0 225.0 0.0 9.0 3.0 0.0 4.0 16.0 4.0 13.0 13.0 483.0 403.0 290.0 429.0
MA0671.1_shift1 (NFIX)				; oligos_7nt_mkv4_m32 versus MA0671.1 (NFIX); m=7/7; ncol2=9; w=8; offset=-1; strand=D; shift=1; score=0.449178; -sgtGCCArv------- ; cor=; Ncor= a 0 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 0 0 0 0 0 0 0 c 0 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 0 0 0 0 0 0 0 g 0 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 0 0 0 0 0 0 0 t 0 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0 0 0 0 0 0 0 0